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UBERON:0001893

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Name:telencephalon
Namespace:FANTOM
Definition:"Organ component of neuraxis that has as its parts the cerebral cortex, cerebral white matter, basal ganglia, septum and fornix, as well as subcortical gray and white matter structures[FMA]." [FMA:62000, Wikipedia:Telencephalon]
Xrefs:
links:

AAO:0010479
ABA:CH
BM:Tel
BTO:0000239
EFO:0000912
EHDAA2:0001982
EMAPA:16652
EMAPA:16910
EV:0100165
FMA:62000
GAID:621
MA:0000183
MAT:0000421
MESH:A.08.186.211.730.885
MIAA:0000421
NIF_GrossAnatomy:birnlex_1115
SCTID:263353005
TAO:0000079
VHOG:0000283
XAO:0000012

ZFA:0000079
Synonyms: "cerebrum" EXACT [1]
"endbrain" EXACT [Swanson:2004]
Comments:The telencephalon is the name for a large region within the brain that is attributed many functions. Many people refer to it as the cerebrum; however, it is technically referred to as the telencephalon. As a more technical definition, the telencephalon refers to the cerebral hemispheres and other, smaller structures within the brain, although the telencephalon is one of the larger divisions (in terms of number). It is the anterior-most embryological division of the brain that develops from the prosencephalon. The telencephalon is composed of the following sub-regions; Limbic system; Cerebral cortex or cortices of the cerebral hemispheres, Basal ganglia, Olfactory bulb. The telencephalon comprises what most people think of as the 'brain' It lies on top of the brainstem and is the largest and most well-developed of the five major divisions of the brain. The telencephalon is the newest structure in the phylogenetic sense, with mammals having the largest and most well-developed among all species. It emerges from the prosencephalon, the first of three vesicles that form from the embryonic neural tube (Christine Fennema-Notestine, NIF_GrossAnatomy:birnlex_1115).
Alt_id: UBERON:FMA_6200-FMA_62000-MA_0000183-MIAA_0000421-XAO_0000012-ZFA_0000079
Subset: uberon_slim
vertebrate_core

Ontology association
Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.

link to ontology dataset
data


Parents

is_a:UBERON:0002780(regional part of forebrain),UBERON:0010314(structure with developmental contribution from neural crest)
part_of:UBERON:0001890(forebrain)



Children

derives from:FF:0010188 (human cerebral meninges - adult sample)
part of:UBERON:0000203 (pallium),UBERON:0000204 (ventral part of telencephalon),UBERON:0001869 (cerebral hemisphere),UBERON:0002285 (telencephalic ventricle),UBERON:0002791 (regional part of telencephalon),UBERON:0005340 (dorsal telencephalic commissure),UBERON:0005366 (olfactory lobe),UBERON:0009663 (telencephalic nucleus),UBERON:0010011 (collection of basal ganglia),UBERON:0011299 (white matter of telencephalon),UBERON:0011300 (gray matter of telencephalon)

Ontology Tree: Loaded from BioPortal


FF samples
It includes FANTOM5 samples that overlay the Uberon ontology


Human (Homo sapiens)

... further results Mouse (Mus musculus)

... further results


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0001893 (telencephalon), sorted by p-values
Analyst: Hideya Kawaji

link to source dataset
human : data
mouse : data


P-valueFFCPShort description
1.43e-124FFCP PHASE1:Hg19::chr6:108487289..108487302,+#_1c80b2674fe8e1b0af63293530890466p1@NR2E1
1.43e-124FFCP PHASE2:Hg19::chr6:108487289..108487302,+#_1c80b2674fe8e1b0af63293530890466p1@NR2E1
2.82e-123FFCP PHASE2:Hg19::chr12:14133429..14133438,-#_dc7b1d87fd9434b0c9ab1c51d8bc6767p3@GRIN2B
2.82e-123FFCP PHASE1:Hg19::chr12:14133429..14133438,-#_dc7b1d87fd9434b0c9ab1c51d8bc6767p3@GRIN2B
4.44e-122FFCP PHASE1:Hg19::chr19:35633957..35633969,+#_8d62ebd338aa6cc5f97acf5b01e2590cp2@FXYD7
4.44e-122FFCP PHASE2:Hg19::chr19:35633957..35633969,+#_8d62ebd338aa6cc5f97acf5b01e2590cp2@FXYD7
1.26e-120FFCP PHASE1:Hg19::chr11:49582389..49582417,+#_4486972765abe8271846731914530307p1@ENST00000527477, p1@ENST00000530858
1.26e-120FFCP PHASE2:Hg19::chr11:49582389..49582417,+#_4486972765abe8271846731914530307p1@ENST00000527477, p1@ENST00000530858
3.1e-119FFCP PHASE2:Hg19::chr5:80255907..80255942,+#_9b2d77478fc76612524fd9a362c8da16p@chr5:80255907..80255942, +
3.1e-119FFCP PHASE1:Hg19::chr5:80255907..80255942,+#_9b2d77478fc76612524fd9a362c8da16p@chr5:80255907..80255942, +
3.9e-119FFCP PHASE2:Hg19::chr11:133402410..133402434,-#_0a0f0e75e4625a34e4c4f3fa3bea03c2p5@OPCML
3.9e-119FFCP PHASE1:Hg19::chr11:133402410..133402434,-#_0a0f0e75e4625a34e4c4f3fa3bea03c2p5@OPCML
1.71e-118FFCP PHASE1:Hg19::chr12:99548462..99548482,-#_5dc051da9caa30d7390aa6720268cfdep9@ANKS1B
1.71e-118FFCP PHASE2:Hg19::chr12:99548462..99548482,-#_5dc051da9caa30d7390aa6720268cfdep9@ANKS1B
2.04e-118FFCP PHASE1:Hg19::chr9:112629512..112629528,+#_00c677aaeb6043832afbc8283b0193e9p7@PALM2
2.04e-118FFCP PHASE2:Hg19::chr9:112629512..112629528,+#_00c677aaeb6043832afbc8283b0193e9p7@PALM2
2.49e-118FFCP PHASE2:Hg19::chr12:11652664..11652681,+#_02eb10efde4d653fe69caff7234b8c2bp@chr12:11652664..11652681, +
2.49e-118FFCP PHASE1:Hg19::chr12:11652664..11652681,+#_02eb10efde4d653fe69caff7234b8c2bp@chr12:11652664..11652681, +
6.26e-118FFCP PHASE2:Hg19::chr4:6474472..6474528,-#_ae2ed6fae439a1fdb0d7be24caee9df1p6@PPP2R2C
6.26e-118FFCP PHASE1:Hg19::chr4:6474472..6474528,-#_ae2ed6fae439a1fdb0d7be24caee9df1p6@PPP2R2C
6.42e-118FFCP PHASE1:Hg19::chr19:54462560..54462571,+#_2203fd0c08eba9522915aa1758fb5661p@chr19:54462560..54462571, +
6.42e-118FFCP PHASE2:Hg19::chr19:54462560..54462571,+#_2203fd0c08eba9522915aa1758fb5661p@chr19:54462560..54462571, +
9.8e-118FFCP PHASE1:Hg19::chr5:27038708..27038730,-#_9cd765495af6ebbe943e6bf118d6439bp2@CDH9
9.8e-118FFCP PHASE2:Hg19::chr5:27038708..27038730,-#_9cd765495af6ebbe943e6bf118d6439bp2@CDH9
1.18e-117FFCP PHASE1:Hg19::chr11:89867681..89867695,+#_97b9aa36754160ef50bca242dca6f272p2@NAALAD2
1.18e-117FFCP PHASE2:Hg19::chr11:89867681..89867695,+#_97b9aa36754160ef50bca242dca6f272p2@NAALAD2
1.48e-117FFCP PHASE2:Hg19::chr4:46392290..46392324,-#_8222f9dc8482139b36859e26a9aeacc5p13@GABRA2
1.48e-117FFCP PHASE1:Hg19::chr4:46392290..46392324,-#_8222f9dc8482139b36859e26a9aeacc5p13@GABRA2
3.76e-117FFCP PHASE2:Hg19::chr9:112629781..112629806,+#_81b063e9af0bd0473dbff7d3e641ae55p14@PALM2-AKAP2
3.76e-117FFCP PHASE1:Hg19::chr9:112629781..112629806,+#_81b063e9af0bd0473dbff7d3e641ae55p14@PALM2-AKAP2
5.36e-117FFCP PHASE1:Hg19::chr11:132982177..132982181,-#_2f2b843ba19bc2bedcc2dd78aa29f906p@chr11:132982177..132982181, -
5.36e-117FFCP PHASE2:Hg19::chr11:132982177..132982181,-#_2f2b843ba19bc2bedcc2dd78aa29f906p@chr11:132982177..132982181, -
7.89e-117FFCP PHASE1:Hg19::chr2:196990526..196990535,-#_bd9dd36808b26771d9f84aa4e0b8d32bp@chr2:196990526..196990535, -
7.89e-117FFCP PHASE2:Hg19::chr2:196990526..196990535,-#_bd9dd36808b26771d9f84aa4e0b8d32bp@chr2:196990526..196990535, -
1.3e-116FFCP PHASE2:Hg19::chr20:1975298..1975316,-#_b9f88916b48ba5103f971340d5c65ff9p2@PDYN
1.3e-116FFCP PHASE1:Hg19::chr20:1975298..1975316,-#_b9f88916b48ba5103f971340d5c65ff9p2@PDYN
1.91e-116FFCP PHASE1:Hg19::chr10:10504498..10504520,+#_2a4b3c20d25803c72619906a7bbefa67p@chr10:10504498..10504520, +
1.91e-116FFCP PHASE2:Hg19::chr10:10504498..10504520,+#_2a4b3c20d25803c72619906a7bbefa67p@chr10:10504498..10504520, +
2.49e-116FFCP PHASE1:Hg19::chr6:155538093..155538109,+#_b996f954e175ca534f9250e0af2ae218p2@TIAM2
2.49e-116FFCP PHASE2:Hg19::chr6:155538093..155538109,+#_b996f954e175ca534f9250e0af2ae218p2@TIAM2
2.66e-116FFCP PHASE2:Hg19::chr12:14133820..14133830,-#_e0a0b01e7d586595223dfd6abff73483p@chr12:14133820..14133830, -
2.66e-116FFCP PHASE1:Hg19::chr12:14133820..14133830,-#_e0a0b01e7d586595223dfd6abff73483p@chr12:14133820..14133830, -
3.15e-116FFCP PHASE1:Hg19::chr1:70033108..70033121,+#_c01744910b097c57741ac565836f9ca8p8@LRRC7
3.15e-116FFCP PHASE2:Hg19::chr1:70033108..70033121,+#_c01744910b097c57741ac565836f9ca8p8@LRRC7
1.71e-115FFCP PHASE1:Hg19::chr12:49931764..49931791,+#_46cc8eb3c174c66c2a851853fb978d7ep@chr12:49931764..49931791, +
1.71e-115FFCP PHASE2:Hg19::chr12:49931764..49931791,+#_46cc8eb3c174c66c2a851853fb978d7ep@chr12:49931764..49931791, +
2.18e-115FFCP PHASE1:Hg19::chr4:46995726..46995765,+#_b7e3bd53366aed1d2e9a241b7bdf193ap5@GABRB1
2.18e-115FFCP PHASE2:Hg19::chr4:46995726..46995765,+#_b7e3bd53366aed1d2e9a241b7bdf193ap5@GABRB1
3.83e-115FFCP PHASE2:Hg19::chr19:54462732..54462743,+#_630c47b82084f5860742ff80cafcfe06p@chr19:54462732..54462743, +
3.83e-115FFCP PHASE1:Hg19::chr19:54462732..54462743,+#_630c47b82084f5860742ff80cafcfe06p@chr19:54462732..54462743, +
7.57e-115FFCP PHASE1:Hg19::chr12:99548410..99548419,-#_54625c859d72111a8bae1223259e5e20p15@ANKS1B
7.57e-115FFCP PHASE2:Hg19::chr12:99548410..99548419,-#_54625c859d72111a8bae1223259e5e20p15@ANKS1B
1.5e-114FFCP PHASE1:Hg19::chr16:30418387..30418422,+#_71da97be7d0101701ff58b505d56d2bdp4@ZNF771
1.5e-114FFCP PHASE2:Hg19::chr16:30418387..30418422,+#_71da97be7d0101701ff58b505d56d2bdp4@ZNF771
1.56e-114FFCP PHASE2:Hg19::chr4:6514469..6514483,-#_528d78ac70fe9188196e908a5d3cf6a2p@chr4:6514469..6514483, -
1.56e-114FFCP PHASE1:Hg19::chr4:6514469..6514483,-#_528d78ac70fe9188196e908a5d3cf6a2p@chr4:6514469..6514483, -
1.64e-114FFCP PHASE1:Hg19::chr10:10504464..10504475,+#_ff15c58adeee6ce0f844bef94c041e46p@chr10:10504464..10504475, +
1.64e-114FFCP PHASE2:Hg19::chr10:10504464..10504475,+#_ff15c58adeee6ce0f844bef94c041e46p@chr10:10504464..10504475, +
1.79e-114FFCP PHASE1:Hg19::chr6:12717801..12717817,+#_685f1ee09b19f3ba540fa896dcc582d6p8@PHACTR1
1.79e-114FFCP PHASE2:Hg19::chr6:12717801..12717817,+#_685f1ee09b19f3ba540fa896dcc582d6p8@PHACTR1
2.01e-114FFCP PHASE2:Hg19::chr6:12717031..12717057,+#_dfe170c713a95ca21e81da276d77b799p5@PHACTR1
2.01e-114FFCP PHASE1:Hg19::chr6:12717031..12717057,+#_dfe170c713a95ca21e81da276d77b799p5@PHACTR1
2.32e-114FFCP PHASE1:Hg19::chr17:9929636..9929643,-#_bfe82d6cd03260cd77b39a51899525c9p24@GAS7
2.32e-114FFCP PHASE2:Hg19::chr17:9929636..9929643,-#_bfe82d6cd03260cd77b39a51899525c9p24@GAS7
6.31e-114FFCP PHASE1:Hg19::chr3:123813592..123813615,+#_d821e05b9c319d445ca291231e11f5cdp9@KALRN
6.31e-114FFCP PHASE2:Hg19::chr3:123813592..123813615,+#_d821e05b9c319d445ca291231e11f5cdp9@KALRN
1.15e-113FFCP PHASE2:Hg19::chr10:11047712..11047726,+#_c894023aae3c8ef189e531c2b4b9d2a2p@chr10:11047712..11047726, +
1.15e-113FFCP PHASE1:Hg19::chr10:11047712..11047726,+#_c894023aae3c8ef189e531c2b4b9d2a2p@chr10:11047712..11047726, +
2.01e-113FFCP PHASE1:Hg19::chr20:1975321..1975338,-#_b730d783601ed70aa35a568917f5a642p3@PDYN
2.01e-113FFCP PHASE2:Hg19::chr20:1975321..1975338,-#_b730d783601ed70aa35a568917f5a642p3@PDYN
2.02e-113FFCP PHASE1:Hg19::chr5:160975135..160975218,-#_942224cbdca6236532bc9d5e7e90c1c7p3@GABRB2
2.02e-113FFCP PHASE2:Hg19::chr5:160975135..160975218,-#_942224cbdca6236532bc9d5e7e90c1c7p3@GABRB2
2.1e-113FFCP PHASE2:Hg19::chr16:14280496..14280512,+#_687006378c8268388689fddead01aecbp9@MKL2
2.1e-113FFCP PHASE1:Hg19::chr16:14280496..14280512,+#_687006378c8268388689fddead01aecbp9@MKL2
2.2e-113FFCP PHASE1:Hg19::chr1:70035053..70035078,+#_801553800d88564ceb576cd346ff32a2p@chr1:70035053..70035078, +
2.2e-113FFCP PHASE2:Hg19::chr1:70035053..70035078,+#_801553800d88564ceb576cd346ff32a2p@chr1:70035053..70035078, +
2.27e-113FFCP PHASE1:Hg19::chr6:12716992..12717005,+#_40d7d40035ebbe04f429bf85ff3db243p3@PHACTR1
2.27e-113FFCP PHASE2:Hg19::chr6:12716992..12717005,+#_40d7d40035ebbe04f429bf85ff3db243p3@PHACTR1
3.67e-113FFCP PHASE1:Hg19::chr12:45315625..45315636,-#_991443a82f7ed4eb450801ac62048093p7@NELL2
3.67e-113FFCP PHASE2:Hg19::chr12:45315625..45315636,-#_991443a82f7ed4eb450801ac62048093p7@NELL2
4.2e-113FFCP PHASE2:Hg19::chr11:133402367..133402378,-#_172129683f652079a1f0673a7bd2eb8fp8@OPCML
4.2e-113FFCP PHASE1:Hg19::chr11:133402367..133402378,-#_172129683f652079a1f0673a7bd2eb8fp8@OPCML
5.3e-113FFCP PHASE2:Hg19::chr2:173600214..173600253,+#_a914c533a47fce9383820be53539611ap7@RAPGEF4
5.3e-113FFCP PHASE1:Hg19::chr2:173600214..173600253,+#_a914c533a47fce9383820be53539611ap7@RAPGEF4
9.91e-113FFCP PHASE2:Hg19::chr12:14134636..14134651,-#_b942802e76545d9c870ca58a0ce01eccp@chr12:14134636..14134651, -
9.91e-113FFCP PHASE1:Hg19::chr12:14134636..14134651,-#_b942802e76545d9c870ca58a0ce01eccp@chr12:14134636..14134651, -
1.16e-112FFCP PHASE1:Hg19::chr15:30231269..30231299,-#_6a281f414a291e1aa9b83bfd3aa43348p@chr15:30231269..30231299, -
1.16e-112FFCP PHASE2:Hg19::chr15:30231269..30231299,-#_6a281f414a291e1aa9b83bfd3aa43348p@chr15:30231269..30231299, -
2.02e-112FFCP PHASE1:Hg19::chr16:14280513..14280524,+#_5b1ae4d8024b30b3165274cc57b65f3ap5@MKL2
2.02e-112FFCP PHASE1:Hg19::chr4:6474536..6474563,-#_5b1ae4d8024b30b3165274cc57b65f3ap9@PPP2R2C
2.02e-112FFCP PHASE2:Hg19::chr16:14280513..14280524,+#_5b1ae4d8024b30b3165274cc57b65f3ap5@MKL2
2.02e-112FFCP PHASE2:Hg19::chr4:6474536..6474563,-#_5b1ae4d8024b30b3165274cc57b65f3ap9@PPP2R2C
2.06e-112FFCP PHASE1:Hg19::chr8:89554929..89554960,+#_65d3f331cf464428108f45f55c849798p1@ENST00000518631
2.06e-112FFCP PHASE2:Hg19::chr8:89554929..89554960,+#_65d3f331cf464428108f45f55c849798p1@ENST00000518631
2.2e-112FFCP PHASE2:Hg19::chr1:35391417..35391476,-#_b9e48887e6273057f015a3baa292f34bp2@DLGAP3
2.2e-112FFCP PHASE1:Hg19::chr1:35391417..35391476,-#_b9e48887e6273057f015a3baa292f34bp2@DLGAP3
5.59e-112FFCP PHASE2:Hg19::chr7:111424462..111424496,-#_66423ba68b59072c6741a2496339c727p3@DOCK4
5.59e-112FFCP PHASE1:Hg19::chr7:111424462..111424496,-#_66423ba68b59072c6741a2496339c727p3@DOCK4
6.0e-112FFCP PHASE1:Hg19::chr19:49016319..49016405,-#_535a3137e805da77370323492c5fd85cp2@LMTK3
6.0e-112FFCP PHASE2:Hg19::chr19:49016319..49016405,-#_535a3137e805da77370323492c5fd85cp2@LMTK3










Property "Property value" (as page type) with input value "UBPROP:0000001 "Part of the forebrain consisting of paired olfactory bulbs and cerebral hemispheres.[AAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process., Property "Property value" (as page type) with input value "UBPROP:0000001 "The anterior and dorsal forebrain neuromere, includes the olfactory bulb. Kimmel et al, 1995.[TAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process., Property "Property value" (as page type) with input value "UBPROP:0000002 "relationship loss: develops_from presumptive telencephalon (TAO:0000571)[TAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.