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UBERON:0001894

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Name:diencephalon
Namespace:FANTOM
Definition:"Organ component of neuraxis that has as its parts the epithalamus, thalamus, hypothalamus, subthalamus[FMA]. The more posterior and ventral of two forebrain neuromeres, the other being the telencephalon; major derivatives are the eye cups, the brain pretectal region, the thalamus, hypothalamus, and epithalamus (including the habenula and epiphysis). <a href
Xrefs:
links:

AAO:0010481
ABA:IB
BM:Die
BTO:0000342
EFO:0000911
EHDAA2:0000385
EHDAA:1969
EHDAA:2645
EHDAA:3472
EMAPA:16641
EMAPA:16896
EV:0100194
FMA:62001
GAID:618
[1]
[ 200px-EmbryonicBrain.svg.png 200px-EmbryonicBrain.svg.png]
MA:0000171
MAT:0000420
MESH:A.08.186.211.730.385
MIAA:0000420
ncithesaurus:Diencephalon
NIF_GrossAnatomy:birnlex_1503
OpenCyc:Mx4rwC-V0JwpEbGdrcN5Y29ycA
SCTID:279328001
TAO:0000101
VHOG:0000318
XAO:0000013

ZFA:0000101
Synonyms: "between brain" EXACT []
"betweenbrain" RELATED [BTO:0000342]
"diencephalon" RELATED LATIN [Wikipedia:Diencephalon]
"interbrain" EXACT [Swanson:2004]
"mature diencephalon" EXACT [FMA:62001]
Comments:Note that in ABA, this is part of the brain stem
Alt_id: UBERON:FMA_62001-MA_0000171-MIAA_0000420-XAO_0000013-ZFA_0000101
Subset: uberon_slim
vertebrate_core

Ontology association
Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.

link to ontology dataset
data


Parents

is_a:UBERON:0002780(regional part of forebrain),UBERON:0010314(structure with developmental contribution from neural crest)
develops_from:UBERON:0006222(future diencephalon)
part_of:UBERON:0001890(forebrain)



Children

derives from:FF:0010193 (human diencephalon - adult sample),FF:0011291 (mouse diencephalon- adult sample),FF:0011470 (mouse diencephalon- neonate N30 sample)
part of:UBERON:0000007 (pituitary gland),UBERON:0002784 (regional part of diencephalon),UBERON:0003296 (gland of diencephalon),UBERON:0010225 (thalamic complex)

Ontology Tree: Loaded from BioPortal


FF samples
It includes FANTOM5 samples that overlay the Uberon ontology


Human (Homo sapiens)

... further results Mouse (Mus musculus)

... further results


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0001894 (diencephalon), sorted by p-values
Analyst: Hideya Kawaji

link to source dataset
human : data
mouse : data


P-valueFFCPShort description
3.15e-112FFCP PHASE1:Hg19::chr19:7979708..7979734,+#_d2a7fe58056ea97a5dfa0d8c6340f2b3p@chr19:7979708..7979734, +
3.15e-112FFCP PHASE2:Hg19::chr19:7979708..7979734,+#_d2a7fe58056ea97a5dfa0d8c6340f2b3p@chr19:7979708..7979734, +
4.43e-90FFCP PHASE1:Hg19::chr5:136328571..136328599,-#_59e001836030ba524fc658c3d824767cp11@SPOCK1
4.43e-90FFCP PHASE2:Hg19::chr5:136328571..136328599,-#_59e001836030ba524fc658c3d824767cp11@SPOCK1
5.58e-90FFCP PHASE1:Hg19::chr12:128210626..128210641,-#_493ce7d05b124a71b42a7ca14fd24085p@chr12:128210626..128210641, -
5.58e-90FFCP PHASE2:Hg19::chr12:128210626..128210641,-#_493ce7d05b124a71b42a7ca14fd24085-, p@chr12:128210626..128210641
1.28e-84FFCP PHASE1:Hg19::chr19:49519930..49519937,-#_fce632260490c7150b422f95cee253c2p@chr19:49519930..49519937, -
1.28e-84FFCP PHASE1:Hg19::chr19:49520344..49520367,-#_fce632260490c7150b422f95cee253c2p1@LHB
1.28e-84FFCP PHASE1:Hg19::chr19:7979644..7979653,+#_fce632260490c7150b422f95cee253c2p@chr19:7979644..7979653, +
1.28e-84FFCP PHASE1:Hg19::chr19:7979677..7979703,+#_fce632260490c7150b422f95cee253c2p@chr19:7979677..7979703, +
1.28e-84FFCP PHASE2:Hg19::chr19:49519930..49519937,-#_fce632260490c7150b422f95cee253c2p@chr19:49519930..49519937, -
1.28e-84FFCP PHASE2:Hg19::chr19:49520344..49520367,-#_fce632260490c7150b422f95cee253c2p1@LHB
1.28e-84FFCP PHASE2:Hg19::chr19:7979644..7979653,+#_fce632260490c7150b422f95cee253c2p@chr19:7979644..7979653, +
1.28e-84FFCP PHASE2:Hg19::chr19:7979677..7979703,+#_fce632260490c7150b422f95cee253c2+, p@chr19:7979677..7979703
1.79e-75FFCP PHASE2:Hg19::chr1:99693441..99693485,-#_f64d5f879d70b09051246473393c1c58p@chr1:99693441..99693485, -
1.79e-75FFCP PHASE1:Hg19::chr1:99693441..99693485,-#_f64d5f879d70b09051246473393c1c58p@chr1:99693441..99693485, -
3.86e-75FFCP PHASE2:Hg19::chr5:133772179..133772191,+#_8be20a9da0e097a07db0efe606d58e09p5@ENST00000513329
3.86e-75FFCP PHASE1:Hg19::chr5:133772179..133772191,+#_8be20a9da0e097a07db0efe606d58e09p5@ENST00000513329
8.06e-65FFCP PHASE1:Hg19::chr5:141783725..141783734,+#_68c975aec6d38413ea33eaa5f27fb320p3@ENST00000443800
8.06e-65FFCP PHASE2:Hg19::chr5:141783725..141783734,+#_68c975aec6d38413ea33eaa5f27fb320p3@ENST00000443800
4.15e-64FFCP PHASE1:Hg19::chr7:107883809..107883820,-#_c36dbc221f651814dcad21836ef8d38fp11@NRCAM
4.15e-64FFCP PHASE2:Hg19::chr9:139096968..139096979,-#_c36dbc221f651814dcad21836ef8d38fp2@LHX3
4.15e-64FFCP PHASE1:Hg19::chr9:139096968..139096979,-#_c36dbc221f651814dcad21836ef8d38fp2@LHX3
4.15e-64FFCP PHASE2:Hg19::chr7:107883809..107883820,-#_c36dbc221f651814dcad21836ef8d38fp11@NRCAM
6.87e-64FFCP PHASE2:Hg19::chr22:47126639..47126654,+#_555b5efaf12d28edabaf55b3a6b740f5p@chr22:47126639..47126654, +
6.87e-64FFCP PHASE1:Hg19::chr22:47126639..47126654,+#_555b5efaf12d28edabaf55b3a6b740f5p@chr22:47126639..47126654, +
1.31e-63FFCP PHASE1:Hg19::chr4:1233005..1233017,+#_a541da6c7b97972342db79bc6273db97p@chr4:1233005..1233017, +
1.31e-63FFCP PHASE1:Hg19::chr11:75194071..75194110,-#_a541da6c7b97972342db79bc6273db97p@chr11:75194071..75194110, -
1.31e-63FFCP PHASE1:Hg19::chr15:71228905..71228915,+#_a541da6c7b97972342db79bc6273db97p17@LRRC49
1.31e-63FFCP PHASE1:Hg19::chr15:75122737..75122741,+#_a541da6c7b97972342db79bc6273db97p@chr15:75122737..75122741, +
1.31e-63FFCP PHASE2:Hg19::chr11:75194071..75194110,-#_a541da6c7b97972342db79bc6273db97p@chr11:75194071..75194110, -
1.31e-63FFCP PHASE2:Hg19::chr15:71228905..71228915,+#_a541da6c7b97972342db79bc6273db97p17@LRRC49
1.31e-63FFCP PHASE2:Hg19::chr15:75122737..75122741,+#_a541da6c7b97972342db79bc6273db97p@chr15:75122737..75122741, +
1.31e-63FFCP PHASE2:Hg19::chr4:1233005..1233017,+#_a541da6c7b97972342db79bc6273db97p@chr4:1233005..1233017, +
6.8e-62FFCP PHASE2:Mm9::chr11:50767247..50767270,-#_f042e6c6a9eb9c9290b6484f395b23d6p1@Prop1
6.8e-62FFCP PHASE1:Mm9::chr11:50767247..50767270,-#_f042e6c6a9eb9c9290b6484f395b23d6p1@Prop1
8.33e-61FFCP PHASE2:Mm9::chr4:139040826..139040847,+#_5baf18f3efd2d38659fc869de09a1207p@chr4:139040826..139040847, +
8.33e-61FFCP PHASE1:Mm9::chr7:86033242..86033245,+#_5baf18f3efd2d38659fc869de09a1207p1@Mir7-2
8.33e-61FFCP PHASE1:Mm9::chr16:65520838..65520853,+#_5baf18f3efd2d38659fc869de09a1207p1@Pou1f1
8.33e-61FFCP PHASE1:Mm9::chr2:157395240..157395251,-#_5baf18f3efd2d38659fc869de09a1207p@chr2:157395240..157395251, -
8.33e-61FFCP PHASE2:Mm9::chr16:65520838..65520853,+#_5baf18f3efd2d38659fc869de09a1207p1@Pou1f1
8.33e-61FFCP PHASE1:Mm9::chr3:102586593..102586598,-#_5baf18f3efd2d38659fc869de09a1207p1@Tshb
8.33e-61FFCP PHASE2:Mm9::chr4:34840978..34840987,+#_5baf18f3efd2d38659fc869de09a1207p3@Cga
8.33e-61FFCP PHASE1:Mm9::chr4:139040826..139040847,+#_5baf18f3efd2d38659fc869de09a1207p@chr4:139040826..139040847, +
8.33e-61FFCP PHASE1:Mm9::chr4:34840978..34840987,+#_5baf18f3efd2d38659fc869de09a1207p3@Cga
8.33e-61FFCP PHASE2:Mm9::chr5:33861619..33861630,-#_5baf18f3efd2d38659fc869de09a1207p@chr5:33861619..33861630, -
8.33e-61FFCP PHASE2:Mm9::chr7:86033242..86033245,+#_5baf18f3efd2d38659fc869de09a1207p1@Mir7-2
8.33e-61FFCP PHASE2:Mm9::chr2:157395240..157395251,-#_5baf18f3efd2d38659fc869de09a1207p@chr2:157395240..157395251, -
8.33e-61FFCP PHASE1:Mm9::chr5:33861619..33861630,-#_5baf18f3efd2d38659fc869de09a1207p@chr5:33861619..33861630, -
8.33e-61FFCP PHASE2:Mm9::chr3:102586593..102586598,-#_5baf18f3efd2d38659fc869de09a1207p1@Tshb
4.76e-57FFCP PHASE2:Hg19::chr2:48705144..48705150,+#_b22930b62f26c452fa2fc1df5691ea62p@chr2:48705144..48705150, +
4.76e-57FFCP PHASE1:Hg19::chr8:116085391..116085419,+#_b22930b62f26c452fa2fc1df5691ea62p@chr8:116085391..116085419, +
4.76e-57FFCP PHASE1:Hg19::chr8:116127086..116127103,+#_b22930b62f26c452fa2fc1df5691ea62p@chr8:116127086..116127103, +
4.76e-57FFCP PHASE2:Hg19::chr13:21399081..21399087,+#_b22930b62f26c452fa2fc1df5691ea62p@chr13:21399081..21399087, +
4.76e-57FFCP PHASE1:Hg19::chr8:126582844..126582849,-#_b22930b62f26c452fa2fc1df5691ea62p@chr8:126582844..126582849, -
4.76e-57FFCP PHASE1:Hg19::chr8:130017368..130017390,+#_b22930b62f26c452fa2fc1df5691ea62+, p@chr8:130017368..130017390
4.76e-57FFCP PHASE1:Hg19::chr8:135472861..135472868,-#_b22930b62f26c452fa2fc1df5691ea62p@chr8:135472861..135472868, -
4.76e-57FFCP PHASE1:Hg19::chr8:135473063..135473075,-#_b22930b62f26c452fa2fc1df5691ea62p@chr8:135473063..135473075, -
4.76e-57FFCP PHASE1:Hg19::chr8:135473205..135473218,-#_b22930b62f26c452fa2fc1df5691ea62p@chr8:135473205..135473218, -
4.76e-57FFCP PHASE1:Hg19::chr8:135473472..135473477,-#_b22930b62f26c452fa2fc1df5691ea62p@chr8:135473472..135473477, -
4.76e-57FFCP PHASE1:Hg19::chr8:135473748..135473753,-#_b22930b62f26c452fa2fc1df5691ea62p@chr8:135473748..135473753, -
4.76e-57FFCP PHASE1:Hg19::chr8:135473876..135473885,-#_b22930b62f26c452fa2fc1df5691ea62p@chr8:135473876..135473885, -
4.76e-57FFCP PHASE1:Hg19::chr8:135473983..135473986,-#_b22930b62f26c452fa2fc1df5691ea62p@chr8:135473983..135473986, -
4.76e-57FFCP PHASE1:Hg19::chr8:135474173..135474185,-#_b22930b62f26c452fa2fc1df5691ea62p@chr8:135474173..135474185, -
4.76e-57FFCP PHASE1:Hg19::chr8:135499228..135499260,-#_b22930b62f26c452fa2fc1df5691ea62p@chr8:135499228..135499260, -
4.76e-57FFCP PHASE1:Hg19::chr8:135504314..135504320,-#_b22930b62f26c452fa2fc1df5691ea62p@chr8:135504314..135504320, -
4.76e-57FFCP PHASE1:Hg19::chr8:135504337..135504342,-#_b22930b62f26c452fa2fc1df5691ea62p@chr8:135504337..135504342, -
4.76e-57FFCP PHASE1:Hg19::chr8:135504353..135504365,-#_b22930b62f26c452fa2fc1df5691ea62p@chr8:135504353..135504365, -
4.76e-57FFCP PHASE1:Hg19::chr8:135504405..135504410,-#_b22930b62f26c452fa2fc1df5691ea62p@chr8:135504405..135504410, -
4.76e-57FFCP PHASE1:Hg19::chr8:135515939..135515941,+#_b22930b62f26c452fa2fc1df5691ea62p@chr8:135515939..135515941, +
4.76e-57FFCP PHASE1:Hg19::chr8:135515957..135515964,+#_b22930b62f26c452fa2fc1df5691ea62p@chr8:135515957..135515964, +
4.76e-57FFCP PHASE1:Hg19::chr8:135515989..135515991,+#_b22930b62f26c452fa2fc1df5691ea62p@chr8:135515989..135515991, +
4.76e-57FFCP PHASE1:Hg19::chr8:135520309..135520324,-#_b22930b62f26c452fa2fc1df5691ea62p@chr8:135520309..135520324, -
4.76e-57FFCP PHASE1:Hg19::chr8:135521466..135521470,+#_b22930b62f26c452fa2fc1df5691ea62p@chr8:135521466..135521470, +
4.76e-57FFCP PHASE1:Hg19::chr8:135522475..135522486,-#_b22930b62f26c452fa2fc1df5691ea62p16@ZFAT
4.76e-57FFCP PHASE2:Hg19::chr2:7497646..7497649,+#_b22930b62f26c452fa2fc1df5691ea62p@chr2:7497646..7497649, +
4.76e-57FFCP PHASE2:Hg19::chr13:52650486..52650491,-#_b22930b62f26c452fa2fc1df5691ea62p@chr13:52650486..52650491, -
4.76e-57FFCP PHASE2:Hg19::chr13:52650530..52650533,-#_b22930b62f26c452fa2fc1df5691ea62p@chr13:52650530..52650533, -
4.76e-57FFCP PHASE2:Hg19::chr13:52650541..52650548,-#_b22930b62f26c452fa2fc1df5691ea62p@chr13:52650541..52650548, -
4.76e-57FFCP PHASE2:Hg19::chr13:56628524..56628547,-#_b22930b62f26c452fa2fc1df5691ea62p@chr13:56628524..56628547, -
4.76e-57FFCP PHASE2:Hg19::chr13:56628548..56628553,-#_b22930b62f26c452fa2fc1df5691ea62p@chr13:56628548..56628553, -
4.76e-57FFCP PHASE2:Hg19::chr13:68306577..68306607,+#_b22930b62f26c452fa2fc1df5691ea62p@chr13:68306577..68306607, +
4.76e-57FFCP PHASE2:Hg19::chr13:78813679..78813681,-#_b22930b62f26c452fa2fc1df5691ea62p@chr13:78813679..78813681, -
4.76e-57FFCP PHASE2:Hg19::chr3:100942376..100942381,-#_b22930b62f26c452fa2fc1df5691ea62p@chr3:100942376..100942381, -
4.76e-57FFCP PHASE2:Hg19::chr3:100942645..100942655,-#_b22930b62f26c452fa2fc1df5691ea62p@chr3:100942645..100942655, -
4.76e-57FFCP PHASE2:Hg19::chr3:101038595..101038604,-#_b22930b62f26c452fa2fc1df5691ea62p@chr3:101038595..101038604, -
4.76e-57FFCP PHASE2:Hg19::chr3:107545606..107545631,-#_b22930b62f26c452fa2fc1df5691ea62p@chr3:107545606..107545631, -
4.76e-57FFCP PHASE2:Hg19::chr3:118521917..118521922,-#_b22930b62f26c452fa2fc1df5691ea62p@chr3:118521917..118521922, -
4.76e-57FFCP PHASE2:Hg19::chr3:128170725..128170735,+#_b22930b62f26c452fa2fc1df5691ea62p@chr3:128170725..128170735, +
4.76e-57FFCP PHASE2:Hg19::chr3:130248877..130248886,+#_b22930b62f26c452fa2fc1df5691ea62p@chr3:130248877..130248886, +
4.76e-57FFCP PHASE2:Hg19::chr3:130248948..130248959,+#_b22930b62f26c452fa2fc1df5691ea62p@chr3:130248948..130248959, +
4.76e-57FFCP PHASE2:Hg19::chr3:133115455..133115457,+#_b22930b62f26c452fa2fc1df5691ea62p@chr3:133115455..133115457, +
4.76e-57FFCP PHASE2:Hg19::chr3:139938385..139938390,+#_b22930b62f26c452fa2fc1df5691ea62p@chr3:139938385..139938390, +
4.76e-57FFCP PHASE1:Hg19::chr8:87751918..87751928,-#_b22930b62f26c452fa2fc1df5691ea62p@chr8:87751918..87751928, -
4.76e-57FFCP PHASE1:Hg19::chr8:87751931..87751947,-#_b22930b62f26c452fa2fc1df5691ea62p@chr8:87751931..87751947, -
4.76e-57FFCP PHASE1:Hg19::chr8:87755821..87755822,-#_b22930b62f26c452fa2fc1df5691ea62p10@CNGB3
4.76e-57FFCP PHASE1:Hg19::chr8:87755845..87755852,-#_b22930b62f26c452fa2fc1df5691ea62p6@CNGB3
4.76e-57FFCP PHASE2:Hg19::chr14:49512240..49512248,-#_b22930b62f26c452fa2fc1df5691ea62-, p@chr14:49512240..49512248
4.76e-57FFCP PHASE1:Hg19::chr8:99033409..99033415,+#_b22930b62f26c452fa2fc1df5691ea62p16@MATN2
4.76e-57FFCP PHASE1:Hg19::chr8:99033417..99033423,+#_b22930b62f26c452fa2fc1df5691ea62p17@MATN2










Property "Property value" (as page type) with input value "UBPROP:0000001 "The more posterior and ventral of two forebrain neuromeres, the other being the telencephalon; major derivatives are the eye cups, the brain pretectal region, the thalamus, hypothalamus, and epithalamus (including the habenula and epiphysis). Kimmel et al, 1995.[TAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process., Property "Property value" (as page type) with input value "UBPROP:0000001 "Unpaired part of the forebrain comprised of three major parts; the epithalamus, thalamus, and hypothalamus.[AAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.