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UBERON:0002018

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Name:synovial membrane of synovial joint
Namespace:FANTOM
Definition:"Soft tissue that lines the non-cartilaginous surfaces within joints with cavities (synovial joints)." [Wikipedia:Synovial_membrane]
Xrefs:
links:

AEO:0000181
BTO:0001823
EFO:0001393
EHDAA2_RETIRED:0003181
EV:0100143
FMA:9865
GAID:264
galen:SynovialMembrane
[ Joint.png Joint.png]
[ 200px-Synovium.png 200px-Synovium.png]
MA:0000114
MESH:A.02.835.583.443.800
ncithesaurus:Synovial_Membrane
SCTID:361828005

VHOG:0001282
Synonyms: "membrana synovialis capsulae articularis" EXACT LATIN [Wikipedia:Synovial_membrane]
"stratum synoviale" EXACT [FMA:66762, FMA:TA]
"synovial layer" BROAD [FMA:66762]
"synovial membrane" BROAD [AEO:0000181]
"synovium" BROAD [BTO:0001823, VHOG:0001282]
Alt_id: UBERON:FMA_66762-MA_0000114
Subset: uberon_slim

Ontology association
Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.

link to ontology dataset
data


Parents

is_a:UBERON:0006915(stratified squamous epithelium),UBERON:0007616(layer of synovial tissue),UBERON:0012275(meso-epithelium)
part_of:UBERON:0002217(synovial joint)



Children

part of:CL:0000214 (synovial cell)

Ontology Tree: Loaded from BioPortal


FF samples
It includes FANTOM5 samples that overlay the Uberon ontology


Human (Homo sapiens)


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0002018 (synovial membrane of synovial joint), sorted by p-values
Analyst: Hideya Kawaji

link to source dataset
human : data
mouse : data


P-valueFFCPShort description
6.24e-88FFCP PHASE1:Hg19::chr7:80546293..80546302,-#_9fcaafc86a67cf8b25d1f563ce3d490cp31@SEMA3C
6.24e-88FFCP PHASE2:Hg19::chr7:80546293..80546302,-#_9fcaafc86a67cf8b25d1f563ce3d490cp31@SEMA3C
1.71e-66FFCP PHASE2:Hg19::chr18:22150956..22150983,+#_bfd10031937b3b95c73eb3e70c8a442bp@chr18:22150956..22150983, +
1.71e-66FFCP PHASE1:Hg19::chr18:22150956..22150983,+#_bfd10031937b3b95c73eb3e70c8a442bp@chr18:22150956..22150983, +
2.39e-66FFCP PHASE1:Hg19::chr1:172134736..172134739,+#_854820212437d60715e63d21532b30db+, p@chr1:172134736..172134739
2.39e-66FFCP PHASE1:Hg19::chr12:130786785..130786827,-#_854820212437d60715e63d21532b30dbp@chr12:130786785..130786827, -
2.39e-66FFCP PHASE2:Hg19::chr2:181751144..181751146,+#_854820212437d60715e63d21532b30dbp@chr2:181751144..181751146, +
2.39e-66FFCP PHASE2:Hg19::chr1:172134755..172134764,+#_854820212437d60715e63d21532b30dbp@chr1:172134755..172134764, +
2.39e-66FFCP PHASE2:Hg19::chr8:37411632..37411639,-#_854820212437d60715e63d21532b30dbp1@ENST00000517363
2.39e-66FFCP PHASE1:Hg19::chr15:68117826..68117829,+#_854820212437d60715e63d21532b30dbp9@SKOR1
2.39e-66FFCP PHASE1:Hg19::chr1:172134755..172134764,+#_854820212437d60715e63d21532b30dbp@chr1:172134755..172134764, +
2.39e-66FFCP PHASE2:Hg19::chr15:68117826..68117829,+#_854820212437d60715e63d21532b30dbp9@SKOR1
2.39e-66FFCP PHASE1:Hg19::chr8:37411632..37411639,-#_854820212437d60715e63d21532b30dbp1@ENST00000517363
2.39e-66FFCP PHASE2:Hg19::chr12:130786785..130786827,-#_854820212437d60715e63d21532b30dbp@chr12:130786785..130786827, -
2.39e-66FFCP PHASE2:Hg19::chr1:172134667..172134711,+#_854820212437d60715e63d21532b30dbp@chr1:172134667..172134711, +
2.39e-66FFCP PHASE1:Hg19::chr1:172134667..172134711,+#_854820212437d60715e63d21532b30dbp@chr1:172134667..172134711, +
2.39e-66FFCP PHASE2:Hg19::chr1:172134736..172134739,+#_854820212437d60715e63d21532b30db+, p@chr1:172134736..172134739
2.39e-66FFCP PHASE1:Hg19::chr2:181751144..181751146,+#_854820212437d60715e63d21532b30dbp@chr2:181751144..181751146, +
1.68e-53FFCP PHASE1:Hg19::chr8:25337208..25337219,+#_3f1192e3cf6ca1e62d0c40361bc1aedcp5@CDCA2
1.68e-53FFCP PHASE2:Hg19::chr8:25337208..25337219,+#_3f1192e3cf6ca1e62d0c40361bc1aedcp5@CDCA2
2.19e-53FFCP PHASE2:Hg19::chr2:242009429..242009432,+#_cb018250cb67b70db100f96aee3a6006p@chr2:242009429..242009432, +
2.19e-53FFCP PHASE1:Hg19::chr2:242009429..242009432,+#_cb018250cb67b70db100f96aee3a6006p@chr2:242009429..242009432, +
2.87e-53FFCP PHASE1:Hg19::chr12:131476821..131476831,-#_65ce77fe30ed06a587ccb327c334563dp@chr12:131476821..131476831, -
2.87e-53FFCP PHASE2:Hg19::chr12:131476821..131476831,-#_65ce77fe30ed06a587ccb327c334563dp@chr12:131476821..131476831, -
1.22e-44FFCP PHASE2:Hg19::chrY:58884631..58884640,+#_a577ba9d21fc0e36122b21c871cf31bcp@chrY:58884631..58884640, +
1.22e-44FFCP PHASE1:Hg19::chrY:58884631..58884640,+#_a577ba9d21fc0e36122b21c871cf31bcp@chrY:58884631..58884640, +
1.8e-38FFCP PHASE1:Hg19::chr1:142537706..142537723,-#_128b0382adb360e644d79f24dfd1c72dp@chr1:142537706..142537723, -
1.8e-38FFCP PHASE2:Hg19::chr1:142537706..142537723,-#_128b0382adb360e644d79f24dfd1c72dp@chr1:142537706..142537723, -
1.85e-36FFCP PHASE1:Hg19::chr10:131634104..131634108,-#_45765bce37c8f09b749a881694c86176p@chr10:131634104..131634108, -
1.85e-36FFCP PHASE2:Hg19::chr10:131634104..131634108,-#_45765bce37c8f09b749a881694c86176p@chr10:131634104..131634108, -
3.33e-34FFCP PHASE2:Hg19::chr17:9066265..9066271,+#_58b854a9c6e5d48df5b37bffb96be472p@chr17:9066265..9066271, +
3.33e-34FFCP PHASE1:Hg19::chr17:9066265..9066271,+#_58b854a9c6e5d48df5b37bffb96be472p@chr17:9066265..9066271, +
4.27e-34FFCP PHASE2:Hg19::chr8:78774585..78774589,-#_ef1637f46a0b5984a7b2f12b56517a83p@chr8:78774585..78774589, -
4.27e-34FFCP PHASE2:Hg19::chr15:68118244..68118272,+#_ef1637f46a0b5984a7b2f12b56517a83p@chr15:68118244..68118272, +
4.27e-34FFCP PHASE1:Hg19::chr12:54379011..54379016,+#_ef1637f46a0b5984a7b2f12b56517a83p15@HOXC10
4.27e-34FFCP PHASE1:Hg19::chr5:1043105..1043109,+#_ef1637f46a0b5984a7b2f12b56517a83p@chr5:1043105..1043109, +
4.27e-34FFCP PHASE1:Hg19::chr12:91435143..91435151,-#_ef1637f46a0b5984a7b2f12b56517a83p@chr12:91435143..91435151, -
4.27e-34FFCP PHASE1:Hg19::chr10:135140510..135140524,-#_ef1637f46a0b5984a7b2f12b56517a83p@chr10:135140510..135140524, -
4.27e-34FFCP PHASE1:Hg19::chr15:68124311..68124318,+#_ef1637f46a0b5984a7b2f12b56517a83p@chr15:68124311..68124318, +
4.27e-34FFCP PHASE2:Hg19::chr4:139010162..139010169,+#_ef1637f46a0b5984a7b2f12b56517a83p1@LOC641364
4.27e-34FFCP PHASE1:Hg19::chr12:130646534..130646542,+#_ef1637f46a0b5984a7b2f12b56517a83p5@FZD10
4.27e-34FFCP PHASE2:Hg19::chr8:37411648..37411657,-#_ef1637f46a0b5984a7b2f12b56517a83p1@ENST00000519738
4.27e-34FFCP PHASE1:Hg19::chr4:139010162..139010169,+#_ef1637f46a0b5984a7b2f12b56517a83p1@LOC641364
4.27e-34FFCP PHASE2:Hg19::chr15:68124311..68124318,+#_ef1637f46a0b5984a7b2f12b56517a83p@chr15:68124311..68124318, +
4.27e-34FFCP PHASE2:Hg19::chr5:1043105..1043109,+#_ef1637f46a0b5984a7b2f12b56517a83p@chr5:1043105..1043109, +
4.27e-34FFCP PHASE2:Hg19::chr10:135140510..135140524,-#_ef1637f46a0b5984a7b2f12b56517a83p@chr10:135140510..135140524, -
4.27e-34FFCP PHASE2:Hg19::chr12:91435143..91435151,-#_ef1637f46a0b5984a7b2f12b56517a83p@chr12:91435143..91435151, -
4.27e-34FFCP PHASE1:Hg19::chr8:37411648..37411657,-#_ef1637f46a0b5984a7b2f12b56517a83p1@ENST00000519738
4.27e-34FFCP PHASE1:Hg19::chr8:78774585..78774589,-#_ef1637f46a0b5984a7b2f12b56517a83p@chr8:78774585..78774589, -
4.27e-34FFCP PHASE2:Hg19::chr12:54379011..54379016,+#_ef1637f46a0b5984a7b2f12b56517a83p15@HOXC10
4.27e-34FFCP PHASE2:Hg19::chr12:130646534..130646542,+#_ef1637f46a0b5984a7b2f12b56517a83p5@FZD10
4.27e-34FFCP PHASE1:Hg19::chr15:68118244..68118272,+#_ef1637f46a0b5984a7b2f12b56517a83p@chr15:68118244..68118272, +
5.51e-34FFCP PHASE2:Hg19::chr15:89402148..89402159,+#_b8b466ef90e4f310a36066c169eddb97p6@ACAN
5.51e-34FFCP PHASE1:Hg19::chr15:89402148..89402159,+#_b8b466ef90e4f310a36066c169eddb97p6@ACAN
5.96e-34FFCP PHASE2:Hg19::chr17:63705566..63705573,-#_9bf8cb7769deb787bf7f7a28123b365ap@chr17:63705566..63705573, -
5.96e-34FFCP PHASE1:Hg19::chr12:54366780..54366791,+#_9bf8cb7769deb787bf7f7a28123b365ap12@HOXC11
5.96e-34FFCP PHASE1:Hg19::chr15:68117844..68117858,+#_9bf8cb7769deb787bf7f7a28123b365ap3@SKOR1
5.96e-34FFCP PHASE2:Hg19::chr1:172145683..172145699,+#_9bf8cb7769deb787bf7f7a28123b365ap@chr1:172145683..172145699, +
5.96e-34FFCP PHASE1:Hg19::chr17:63705566..63705573,-#_9bf8cb7769deb787bf7f7a28123b365ap@chr17:63705566..63705573, -
5.96e-34FFCP PHASE2:Hg19::chr15:68117844..68117858,+#_9bf8cb7769deb787bf7f7a28123b365ap3@SKOR1
5.96e-34FFCP PHASE1:Hg19::chr1:172145683..172145699,+#_9bf8cb7769deb787bf7f7a28123b365ap@chr1:172145683..172145699, +
5.96e-34FFCP PHASE2:Hg19::chr6:42072877..42072881,-#_9bf8cb7769deb787bf7f7a28123b365ap11@C6orf132
5.96e-34FFCP PHASE2:Hg19::chr13:73102090..73102097,-#_9bf8cb7769deb787bf7f7a28123b365ap@chr13:73102090..73102097, -
5.96e-34FFCP PHASE1:Hg19::chr6:42072877..42072881,-#_9bf8cb7769deb787bf7f7a28123b365ap11@C6orf132
5.96e-34FFCP PHASE1:Hg19::chr13:73102090..73102097,-#_9bf8cb7769deb787bf7f7a28123b365ap@chr13:73102090..73102097, -
5.96e-34FFCP PHASE2:Hg19::chr12:54366780..54366791,+#_9bf8cb7769deb787bf7f7a28123b365ap12@HOXC11
7.7e-34FFCP PHASE2:Hg19::chrY:13450855..13450866,+#_f1203ad245862da4e42097dd70ac293dp@chrY:13450855..13450866, +
7.7e-34FFCP PHASE1:Hg19::chrY:13450855..13450866,+#_f1203ad245862da4e42097dd70ac293dp@chrY:13450855..13450866, +
1.46e-31FFCP PHASE1:Hg19::chr19:18718172..18718197,+#_42f2f1dbf574a4034440c5534ab07490p@chr19:18718172..18718197, +
1.46e-31FFCP PHASE2:Hg19::chr19:18718172..18718197,+#_42f2f1dbf574a4034440c5534ab07490p@chr19:18718172..18718197, +
1.71e-30FFCP PHASE2:Hg19::chr21:39821025..39821046,-#_3561435528cc6b720bdb38632ec20d3fp9@ERG
1.71e-30FFCP PHASE1:Hg19::chr21:39821025..39821046,-#_3561435528cc6b720bdb38632ec20d3fp9@ERG
2.3e-30FFCP PHASE2:Hg19::chr15:89402048..89402061,+#_c46d431ef1988f44aba682f1258a42c4p8@ACAN
2.3e-30FFCP PHASE1:Hg19::chr1:186273262..186273282,+#_c46d431ef1988f44aba682f1258a42c4p@chr1:186273262..186273282, +
2.3e-30FFCP PHASE1:Hg19::chr15:89402048..89402061,+#_c46d431ef1988f44aba682f1258a42c4p8@ACAN
2.3e-30FFCP PHASE2:Hg19::chr1:186273262..186273282,+#_c46d431ef1988f44aba682f1258a42c4p@chr1:186273262..186273282, +
7.54e-30FFCP PHASE1:Hg19::chr1:186276427..186276448,+#_11e1ae35198a338b0680e12c871f22bfp@chr1:186276427..186276448, +
7.54e-30FFCP PHASE2:Hg19::chr1:186276427..186276448,+#_11e1ae35198a338b0680e12c871f22bfp@chr1:186276427..186276448, +
8.12e-28FFCP PHASE1:Hg19::chr7:80373118..80373135,-#_922d3a4e6fb86c53b106fde43098f9f2p21@SEMA3C
8.12e-28FFCP PHASE2:Hg19::chr7:80373118..80373135,-#_922d3a4e6fb86c53b106fde43098f9f2p21@SEMA3C
1.39e-27FFCP PHASE2:Hg19::chr20:48160907..48160918,-#_8860cb3916210da69a2a2926b50c82ecp@chr20:48160907..48160918, -
1.39e-27FFCP PHASE1:Hg19::chr20:48160907..48160918,-#_8860cb3916210da69a2a2926b50c82ecp@chr20:48160907..48160918, -
1.82e-27FFCP PHASE1:Hg19::chr3:156877038..156877058,-#_32e1a135ea3e8cfd67d52be22fc9074ep35@CCNL1
1.82e-27FFCP PHASE2:Hg19::chr1:142537912..142537938,-#_32e1a135ea3e8cfd67d52be22fc9074ep@chr1:142537912..142537938, -
1.82e-27FFCP PHASE1:Hg19::chr1:142537912..142537938,-#_32e1a135ea3e8cfd67d52be22fc9074ep@chr1:142537912..142537938, -
1.82e-27FFCP PHASE2:Hg19::chr20:43343646..43343655,+#_32e1a135ea3e8cfd67d52be22fc9074ep7@WISP2
1.82e-27FFCP PHASE2:Hg19::chr3:156877038..156877058,-#_32e1a135ea3e8cfd67d52be22fc9074ep35@CCNL1
1.82e-27FFCP PHASE1:Hg19::chr20:43343646..43343655,+#_32e1a135ea3e8cfd67d52be22fc9074ep7@WISP2
2.08e-27FFCP PHASE2:Hg19::chr1:142539672..142539687,-#_958897092a8f74b93fb4931c8ccd9a70p@chr1:142539672..142539687, -
2.08e-27FFCP PHASE1:Hg19::chr1:142539672..142539687,-#_958897092a8f74b93fb4931c8ccd9a70p@chr1:142539672..142539687, -
2.08e-27FFCP PHASE1:Hg19::chr6:1609602..1609636,-#_958897092a8f74b93fb4931c8ccd9a70p@chr6:1609602..1609636, -
2.08e-27FFCP PHASE2:Hg19::chr6:1609602..1609636,-#_958897092a8f74b93fb4931c8ccd9a70p@chr6:1609602..1609636, -
2.38e-27FFCP PHASE1:Hg19::chr21:39705323..39705334,-#_a78b63540c3f395b3e4cc220262fd96cp2@ENST00000436845
2.38e-27FFCP PHASE2:Hg19::chr21:39705323..39705334,-#_a78b63540c3f395b3e4cc220262fd96cp2@ENST00000436845
3.11e-27FFCP PHASE1:Hg19::chr6:31918397..31918412,+#_fe0796154ecb5f5d902496d086029fd5p15@CFB
3.11e-27FFCP PHASE1:Hg19::chr16:15680784..15680797,+#_fe0796154ecb5f5d902496d086029fd5p@chr16:15680784..15680797, +
3.11e-27FFCP PHASE2:Hg19::chr6:31918397..31918412,+#_fe0796154ecb5f5d902496d086029fd5p15@CFB
3.11e-27FFCP PHASE2:Hg19::chr16:15680784..15680797,+#_fe0796154ecb5f5d902496d086029fd5p@chr16:15680784..15680797, +
4.07e-27FFCP PHASE2:Hg19::chr8:70476088..70476102,+#_541f897488730d7052fd917a6aafbd2dp21@SULF1
4.07e-27FFCP PHASE1:Hg19::chr8:70476088..70476102,+#_541f897488730d7052fd917a6aafbd2dp21@SULF1