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UBERON:0002020

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Name:gray matter
Namespace:FANTOM
Definition:"Heterogeneous cluster of neural somas in the brain and the spinal cord." [Wikipedia:Gray_matter]
Xrefs:
links:

AEO:0000136
EHDAA2:0003136
EHDAA2:0004658
FMA:67242
[ 200px-Spinal_nerve.svg.png 200px-Spinal_nerve.svg.png]
MA:0001112
ncithesaurus:Gray_Matter
OpenCyc:Mx4rwDdKMpwpEbGdrcN5Y29ycA
TAO:0002197

ZFA:0001681
Synonyms: "gray mater" RELATED [ZFA:0001681]
"gray matter" EXACT []
"grey matter" EXACT []
"grey substance" EXACT []
"neuronal grey matter" EXACT [EHDAA2:0004658]
"substantia grisea" EXACT [FMA:67242, FMA:TA]
Alt_id: UBERON:FMA_67242-MA_0001112
Subset: uberon_slim
vertebrate_core

Ontology association
Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.

link to ontology dataset
data


Parents

is_a:UBERON:0011215(central nervous system cell part cluster)
part_of:UBERON:0001017(central nervous system)



Children

is a:UBERON:0002315 (gray matter of spinal cord),UBERON:0003528 (brain grey matter),UBERON:0007245 (nuclear complex of neuraxis)
part of:UBERON:0016548 (central nervous system gray matter layer)

Ontology Tree: Loaded from BioPortal


FF samples
It includes FANTOM5 samples that overlay the Uberon ontology


Human (Homo sapiens)

... further results Mouse (Mus musculus)

... further results


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0002020 (gray matter), sorted by p-values
Analyst: Hideya Kawaji

link to source dataset
human : data
mouse : data


P-valueFFCPShort description
2.77e-120FFCP PHASE1:Hg19::chr11:49582389..49582417,+#_470c86f0784c4b493a0511b806ac2f7ap1@ENST00000527477, p1@ENST00000530858
2.77e-120FFCP PHASE2:Hg19::chr11:49582389..49582417,+#_470c86f0784c4b493a0511b806ac2f7ap1@ENST00000527477, p1@ENST00000530858
3.69e-119FFCP PHASE1:Hg19::chr14:24047743..24047754,-#_2ea7877c67c09ae33c18909fbc52e19ep12@JPH4
3.69e-119FFCP PHASE2:Hg19::chr14:24047743..24047754,-#_2ea7877c67c09ae33c18909fbc52e19ep12@JPH4
3.97e-118FFCP PHASE2:Hg19::chr12:11652664..11652681,+#_da807845d601ffe55082aca6b021b186p@chr12:11652664..11652681, +
3.97e-118FFCP PHASE1:Hg19::chr12:11652664..11652681,+#_da807845d601ffe55082aca6b021b186p@chr12:11652664..11652681, +
2.4e-117FFCP PHASE2:Hg19::chr4:6474472..6474528,-#_01b52e2cdaf3620c6dba7aa286fbf654p6@PPP2R2C
2.4e-117FFCP PHASE1:Hg19::chr4:6474472..6474528,-#_01b52e2cdaf3620c6dba7aa286fbf654p6@PPP2R2C
2.24e-116FFCP PHASE1:Hg19::chr2:210444748..210444770,+#_24c73b958ddbb82c47a9dbb7bd635a9fp20@MAP2
2.24e-116FFCP PHASE2:Hg19::chr2:210444748..210444770,+#_24c73b958ddbb82c47a9dbb7bd635a9fp20@MAP2
6.97e-116FFCP PHASE1:Hg19::chr7:150748288..150748337,+#_7690847063fc481ca7292f3df745d463p1@ACCN3
6.97e-116FFCP PHASE2:Hg19::chr7:150748288..150748337,+#_7690847063fc481ca7292f3df745d463p1@ACCN3
4.01e-115FFCP PHASE2:Hg19::chr19:54462732..54462743,+#_8f73de82481c4eaccaec2dc3b13c461bp@chr19:54462732..54462743, +
4.01e-115FFCP PHASE1:Hg19::chr19:54462732..54462743,+#_8f73de82481c4eaccaec2dc3b13c461bp@chr19:54462732..54462743, +
1.14e-114FFCP PHASE1:Hg19::chr12:14133429..14133438,-#_cf5ea7b585d0ac7753c7f4e8f09b8663p3@GRIN2B
1.14e-114FFCP PHASE2:Hg19::chr12:14133429..14133438,-#_cf5ea7b585d0ac7753c7f4e8f09b8663p3@GRIN2B
3.44e-114FFCP PHASE1:Hg19::chr19:55794942..55794982,+#_95ba889863eabdff12b54cd5c19480e8p@chr19:55794942..55794982, +
3.44e-114FFCP PHASE2:Hg19::chr19:55794942..55794982,+#_95ba889863eabdff12b54cd5c19480e8p@chr19:55794942..55794982, +
4.09e-114FFCP PHASE1:Hg19::chr2:115200192..115200244,+#_b209b07002ff1a3a7d197b76d489138fp3@DPP10
4.09e-114FFCP PHASE2:Hg19::chr2:115200192..115200244,+#_b209b07002ff1a3a7d197b76d489138fp3@DPP10
5.07e-114FFCP PHASE2:Hg19::chr19:54462276..54462325,+#_1a1b6c1446a4594b731f852fc0763b93p@chr19:54462276..54462325, +
5.07e-114FFCP PHASE1:Hg19::chr19:54462276..54462325,+#_1a1b6c1446a4594b731f852fc0763b93p@chr19:54462276..54462325, +
1.45e-113FFCP PHASE1:Hg19::chr16:24267508..24267525,+#_59b0d97de39b6d8f4cd38b1daa12a787p4@CACNG3
1.45e-113FFCP PHASE2:Hg19::chr16:24267508..24267525,+#_59b0d97de39b6d8f4cd38b1daa12a787p4@CACNG3
2.01e-113FFCP PHASE2:Hg19::chr20:1975321..1975338,-#_545fb54463dea4caa7e34dad1c259d37p3@PDYN
2.01e-113FFCP PHASE1:Hg19::chr20:1975321..1975338,-#_545fb54463dea4caa7e34dad1c259d37p3@PDYN
9.5e-113FFCP PHASE2:Hg19::chr5:160975135..160975218,-#_4ef46f7019fe253281a1f4c65a6ae54cp3@GABRB2
9.5e-113FFCP PHASE1:Hg19::chr5:160975135..160975218,-#_4ef46f7019fe253281a1f4c65a6ae54cp3@GABRB2
1.47e-112FFCP PHASE1:Hg19::chr11:133402367..133402378,-#_3182ca22496273652175177ce3b13086p8@OPCML
1.47e-112FFCP PHASE2:Hg19::chr11:133402367..133402378,-#_3182ca22496273652175177ce3b13086p8@OPCML
2.02e-112FFCP PHASE2:Hg19::chr12:14134636..14134651,-#_d2e3948bf81dfae6f4edee89166d47bcp@chr12:14134636..14134651, -
2.02e-112FFCP PHASE1:Hg19::chr12:14134636..14134651,-#_d2e3948bf81dfae6f4edee89166d47bcp@chr12:14134636..14134651, -
4.68e-112FFCP PHASE1:Hg19::chr4:6474536..6474563,-#_d3d739312bd747754f0ebcd4df0e95b6p9@PPP2R2C
4.68e-112FFCP PHASE2:Hg19::chr4:6474536..6474563,-#_d3d739312bd747754f0ebcd4df0e95b6p9@PPP2R2C
2.32e-111FFCP PHASE2:Hg19::chr18:55019840..55019850,+#_5384a56eeb47b45f7c7ef3b951f424c2p5@ST8SIA3
2.32e-111FFCP PHASE1:Hg19::chr18:55019840..55019850,+#_5384a56eeb47b45f7c7ef3b951f424c2p5@ST8SIA3
2.51e-111FFCP PHASE1:Hg19::chr19:54462535..54462548,+#_ea5ea24ea582345059feec7cb3ffd1e4p@chr19:54462535..54462548, +
2.51e-111FFCP PHASE2:Hg19::chr19:54462535..54462548,+#_ea5ea24ea582345059feec7cb3ffd1e4p@chr19:54462535..54462548, +
4.73e-111FFCP PHASE2:Hg19::chr11:133402410..133402434,-#_224ac3202b362816628e8520fa296bdep5@OPCML
4.73e-111FFCP PHASE1:Hg19::chr11:133402410..133402434,-#_224ac3202b362816628e8520fa296bdep5@OPCML
8.62e-111FFCP PHASE2:Hg19::chr5:80255907..80255942,+#_8e9667d6ed1964b4a4bb8459d64e40bep@chr5:80255907..80255942, +
8.62e-111FFCP PHASE1:Hg19::chr5:80255907..80255942,+#_8e9667d6ed1964b4a4bb8459d64e40bep@chr5:80255907..80255942, +
2.43e-110FFCP PHASE1:Hg19::chr6:62390886..62390903,-#_8f4cd3850d82c6f8375fdbabc429906cp1@ENST00000511849
2.43e-110FFCP PHASE2:Hg19::chr6:62390886..62390903,-#_8f4cd3850d82c6f8375fdbabc429906cp1@ENST00000511849
3.36e-110FFCP PHASE2:Hg19::chr6:108487289..108487302,+#_6fc1c35a64b5022b37b539a21ca0a8fep1@NR2E1
3.36e-110FFCP PHASE1:Hg19::chr6:108487289..108487302,+#_6fc1c35a64b5022b37b539a21ca0a8fep1@NR2E1
5.09e-110FFCP PHASE1:Hg19::chr9:112629512..112629528,+#_e01d911e203b8ba9aae3be9f0baa27f2p7@PALM2
5.09e-110FFCP PHASE2:Hg19::chr9:112629512..112629528,+#_e01d911e203b8ba9aae3be9f0baa27f2p7@PALM2
8.14e-110FFCP PHASE2:Hg19::chrX:152939089..152939119,-#_414c4626ba585183a81ed540159c3566p2@PNCK
8.14e-110FFCP PHASE1:Hg19::chrX:152939089..152939119,-#_414c4626ba585183a81ed540159c3566p2@PNCK
3.28e-109FFCP PHASE2:Hg19::chr5:27038708..27038730,-#_242bb85c96cec9626d622f406dc08787p2@CDH9
3.28e-109FFCP PHASE1:Hg19::chr5:27038708..27038730,-#_242bb85c96cec9626d622f406dc08787p2@CDH9
8.01e-109FFCP PHASE1:Hg19::chr19:54462010..54462060,+#_7f5c0a1d7fe789db57c57e3ad8252007p@chr19:54462010..54462060, +
8.01e-109FFCP PHASE2:Hg19::chr19:54462010..54462060,+#_7f5c0a1d7fe789db57c57e3ad8252007p@chr19:54462010..54462060, +
8.43e-109FFCP PHASE2:Hg19::chr9:112629781..112629806,+#_5f4b3a1abc3ccf7b08d0f3f86f49163fp14@PALM2-AKAP2
8.43e-109FFCP PHASE1:Hg19::chr9:112629781..112629806,+#_5f4b3a1abc3ccf7b08d0f3f86f49163fp14@PALM2-AKAP2
1.04e-108FFCP PHASE2:Hg19::chr15:80735246..80735321,+#_4059d0fec73f1ad2fa60f0316622c0cep3@ARNT2
1.04e-108FFCP PHASE1:Hg19::chr15:80735246..80735321,+#_4059d0fec73f1ad2fa60f0316622c0cep3@ARNT2
1.61e-108FFCP PHASE1:Hg19::chr11:89867681..89867695,+#_abd96a01521673d735911ab797b97fd9p2@NAALAD2
1.61e-108FFCP PHASE2:Hg19::chr11:89867681..89867695,+#_abd96a01521673d735911ab797b97fd9p2@NAALAD2
2.01e-108FFCP PHASE2:Hg19::chr1:70033108..70033121,+#_a271d6ea2795e018df2e5fd35a114995p8@LRRC7
2.01e-108FFCP PHASE1:Hg19::chr1:70033108..70033121,+#_a271d6ea2795e018df2e5fd35a114995p8@LRRC7
2.37e-108FFCP PHASE1:Hg19::chr11:132982177..132982181,-#_af38c7c68b2d93f88badfdb486302243p@chr11:132982177..132982181, -
2.37e-108FFCP PHASE2:Hg19::chr11:132982177..132982181,-#_af38c7c68b2d93f88badfdb486302243p@chr11:132982177..132982181, -
3.44e-108FFCP PHASE2:Hg19::chr6:155538093..155538109,+#_89713d873dfcf0fe4b3cf2911e42e0d0p2@TIAM2
3.44e-108FFCP PHASE1:Hg19::chr6:155538093..155538109,+#_89713d873dfcf0fe4b3cf2911e42e0d0p2@TIAM2
3.59e-108FFCP PHASE2:Hg19::chr19:54462560..54462571,+#_653db98cb04976597a72d7315f469b11p@chr19:54462560..54462571, +
3.59e-108FFCP PHASE1:Hg19::chr19:54462560..54462571,+#_653db98cb04976597a72d7315f469b11p@chr19:54462560..54462571, +
4.72e-108FFCP PHASE1:Hg19::chr17:77090555..77090587,-#_849bdd5cdbbc25369b232d0fe9e38aedp@chr17:77090555..77090587, -
4.72e-108FFCP PHASE2:Hg19::chr17:77090555..77090587,-#_849bdd5cdbbc25369b232d0fe9e38aedp@chr17:77090555..77090587, -
8.45e-108FFCP PHASE1:Hg19::chr2:8595510..8595529,-#_c0aabc4f675394a6af138790d92e378cp@chr2:8595510..8595529, -
8.45e-108FFCP PHASE2:Hg19::chr2:8595510..8595529,-#_c0aabc4f675394a6af138790d92e378cp@chr2:8595510..8595529, -
1.02e-107FFCP PHASE2:Hg19::chr20:1975298..1975316,-#_51fe512658afe0fb0bf5a36f5e72b23fp2@PDYN
1.02e-107FFCP PHASE1:Hg19::chr20:1975298..1975316,-#_51fe512658afe0fb0bf5a36f5e72b23fp2@PDYN
1.13e-107FFCP PHASE1:Hg19::chr4:46392290..46392324,-#_39b3fdbb653ad25f3596192faaf6ca8fp13@GABRA2
1.13e-107FFCP PHASE2:Hg19::chr4:46392290..46392324,-#_39b3fdbb653ad25f3596192faaf6ca8fp13@GABRA2
1.19e-107FFCP PHASE2:Hg19::chr16:56390359..56390376,+#_f1d5e0ee4b19ae76848be896da10608bp@chr16:56390359..56390376, +
1.19e-107FFCP PHASE1:Hg19::chr16:56390359..56390376,+#_f1d5e0ee4b19ae76848be896da10608bp@chr16:56390359..56390376, +
1.24e-107FFCP PHASE1:Hg19::chr1:156119798..156119834,+#_68f22b0baf990ffac19771cb85de21cdp5@SEMA4A
1.24e-107FFCP PHASE2:Hg19::chr1:156119798..156119834,+#_68f22b0baf990ffac19771cb85de21cdp5@SEMA4A
1.31e-107FFCP PHASE2:Hg19::chr7:54609764..54609789,+#_7f0013ff6e29f5a4dc5ef45f5b2a578fp8@VSTM2A
1.31e-107FFCP PHASE1:Hg19::chr7:54609764..54609789,+#_7f0013ff6e29f5a4dc5ef45f5b2a578fp8@VSTM2A
1.91e-107FFCP PHASE2:Hg19::chr12:14134689..14134704,-#_98b775a2353fd6cda4b273a099e6d51ap@chr12:14134689..14134704, -
1.91e-107FFCP PHASE1:Hg19::chr12:14134689..14134704,-#_98b775a2353fd6cda4b273a099e6d51ap@chr12:14134689..14134704, -
2.32e-107FFCP PHASE1:Hg19::chr12:14133820..14133830,-#_74ed83e5da24d761171114471f118962p@chr12:14133820..14133830, -
2.32e-107FFCP PHASE2:Hg19::chr12:14133820..14133830,-#_74ed83e5da24d761171114471f118962p@chr12:14133820..14133830, -
2.8e-107FFCP PHASE2:Hg19::chr12:57957885..57957898,+#_11b6e2c38e20193944049779f3320e6fp@chr12:57957885..57957898, +
2.8e-107FFCP PHASE1:Hg19::chr12:57957885..57957898,+#_11b6e2c38e20193944049779f3320e6fp@chr12:57957885..57957898, +
3.92e-107FFCP PHASE1:Hg19::chr6:101847075..101847092,+#_563b639352a0bf929926da1b562bece6p5@GRIK2
3.92e-107FFCP PHASE2:Hg19::chr6:101847075..101847092,+#_563b639352a0bf929926da1b562bece6p5@GRIK2
4.4e-107FFCP PHASE2:Hg19::chr1:2005182..2005194,+#_a0608fe045ab65a46c4d1680d37c4ce2p8@PRKCZ
4.4e-107FFCP PHASE1:Hg19::chr1:2005182..2005194,+#_a0608fe045ab65a46c4d1680d37c4ce2p8@PRKCZ
8.12e-107FFCP PHASE1:Hg19::chr20:34743645..34743687,-#_646a56b594ddd821d4cd8102714741acp1@ENST00000441208, p1@uc002xfa.1
8.12e-107FFCP PHASE2:Hg19::chr20:34743645..34743687,-#_646a56b594ddd821d4cd8102714741acp1@ENST00000441208, p1@uc002xfa.1
8.19e-107FFCP PHASE1:Hg19::chr2:196990526..196990535,-#_bcc5a8694c6aab54af154e3d2bea193bp@chr2:196990526..196990535, -
8.19e-107FFCP PHASE2:Hg19::chr2:196990526..196990535,-#_bcc5a8694c6aab54af154e3d2bea193bp@chr2:196990526..196990535, -
8.66e-107FFCP PHASE1:Hg19::chrX:13835312..13835321,-#_1562fdbbae921ba7c7e852f936df3034p9@GPM6B
8.66e-107FFCP PHASE2:Hg19::chrX:13835312..13835321,-#_1562fdbbae921ba7c7e852f936df3034p9@GPM6B
1.08e-106FFCP PHASE2:Hg19::chr16:24267634..24267671,+#_99a918dddd2db880dde12081a52491ffp2@CACNG3
1.08e-106FFCP PHASE1:Hg19::chr16:24267634..24267671,+#_99a918dddd2db880dde12081a52491ffp2@CACNG3










Property "Property value" (as page type) with input value "UBPROP:0000001 "Multi-tissue comprised of neurons, dendrites, axon terminals, glial cells, and capillaries.[TAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.