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UBERON:0002066

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Name:umbilical vein
Namespace:FANTOM
Definition:"The umbilical vein is a blood vessel present during fetal development that carries oxygenated blood from the placenta to the growing fetus. [WP,unvetted]." [Wikipedia:Umbilical_vein]
Xrefs:
links:

BTO:0001509
EFO:0001940
EHDAA:1034
EHDAA:488
EMAPA:16243
EMAPA:16375
EV:0100392
FMA:70317
GAID:542
[ Gray502.png Gray502.png]
[ 200px-Gray502.png 200px-Gray502.png]
MA:0002249
MESH:A.07.231.908.670.874
ncithesaurus:Umbilical_Vein
OpenCyc:Mx4rdu17MmWaEd2AAABQjYGu0g
RETIRED_EHDAA2:0002107
SCTID:367567000

VHOG:0000015
Synonyms: "vena umbilicalis" RELATED LATIN [Wikipedia:Umbilical_vein]
Alt_id: UBERON:FMA_70317-MA_0002249
Subset: uberon_slim

Ontology association
Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.

link to ontology dataset
data


Parents

is_a:UBERON:0001638(vein),UBERON:0010260(umbilical blood vessel)



Children

part of:FF:0000177 (human smooth muscle cell of umbilical vein sample),CL:0002588 (smooth muscle cell of the umbilical vein),CL:0002618 (endothelial cell of umbilical vein)

Ontology Tree: Loaded from BioPortal


FF samples
It includes FANTOM5 samples that overlay the Uberon ontology


Human (Homo sapiens)

  • 11243-116E1 (Endothelial Cells - Umbilical vein, donor1)
  • 11324-117E1 (Endothelial Cells - Umbilical vein, donor2)
  • 11400-118D5 (Endothelial Cells - Umbilical vein, donor3)
  • 11541-120B2 (Smooth Muscle Cells - Umbilical Vein, donor1)
  • 11621-122B1 (Smooth Muscle Cells - Umbilical Vein, donor2)
  • 11702-123B1 (Smooth Muscle Cells - Umbilical Vein, donor3)


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0002066 (umbilical vein), sorted by p-values
Analyst: Hideya Kawaji

link to source dataset
human : data
mouse : data


P-valueFFCPShort description
3.49e-79FFCP PHASE2:Hg19::chr1:78512168..78512171,-#_07f66eaaa21305e2c55666d5bbd06ee2p@chr1:78512168..78512171, -
3.49e-79FFCP PHASE1:Hg19::chr1:78512168..78512171,-#_07f66eaaa21305e2c55666d5bbd06ee2p@chr1:78512168..78512171, -
6.03e-60FFCP PHASE2:Hg19::chr10:94590950..94590955,+#_27fe2473e57b832c224a3fdd131f95b2p13@EXOC6
6.03e-60FFCP PHASE1:Hg19::chr10:94590950..94590955,+#_27fe2473e57b832c224a3fdd131f95b2p13@EXOC6
6.03e-60FFCP PHASE2:Hg19::chr1:78510648..78510661,+#_27fe2473e57b832c224a3fdd131f95b2p7@GIPC2
6.03e-60FFCP PHASE1:Hg19::chr1:78510648..78510661,+#_27fe2473e57b832c224a3fdd131f95b2p7@GIPC2
2.01e-59FFCP PHASE2:Hg19::chr12:105962745..105962748,+#_b0126ca7bb6fffeaf315be71e54e82acp@chr12:105962745..105962748, +
2.01e-59FFCP PHASE1:Hg19::chr12:105962745..105962748,+#_b0126ca7bb6fffeaf315be71e54e82acp@chr12:105962745..105962748, +
2.73e-51FFCP PHASE1:Hg19::chr1:78511901..78511912,+#_765b7835ade7cdaea1d5ccbb52e972cdp6@GIPC2
2.73e-51FFCP PHASE2:Hg19::chr1:78511901..78511912,+#_765b7835ade7cdaea1d5ccbb52e972cdp6@GIPC2
6.45e-51FFCP PHASE2:Hg19::chr11:59875891..59875903,-#_436c9b5f1de57e0b73080174c320822ep@chr11:59875891..59875903, -
6.45e-51FFCP PHASE1:Hg19::chr11:59875891..59875903,-#_436c9b5f1de57e0b73080174c320822ep@chr11:59875891..59875903, -
1.89e-45FFCP PHASE2:Hg19::chr18:53146977..53146999,-#_9b136b7b314cfb164209b75d314fae1dp@chr18:53146977..53146999, -
1.89e-45FFCP PHASE1:Hg19::chr18:53146977..53146999,-#_9b136b7b314cfb164209b75d314fae1dp@chr18:53146977..53146999, -
4.69e-45FFCP PHASE2:Hg19::chr10:94590997..94591006,+#_a13617dcac2e7feb127dfa91e26acf8ap11@EXOC6
4.69e-45FFCP PHASE1:Hg19::chr10:94590997..94591006,+#_a13617dcac2e7feb127dfa91e26acf8ap11@EXOC6
6.33e-45FFCP PHASE2:Hg19::chr12:105863737..105863745,+#_b71758e6fe82906a6618dcaa14594237p@chr12:105863737..105863745, +
6.33e-45FFCP PHASE1:Hg19::chr12:105863737..105863745,+#_b71758e6fe82906a6618dcaa14594237p@chr12:105863737..105863745, +
1.48e-40FFCP PHASE1:Hg19::chr17:54543635..54543636,+#_f37d67fbe5f33a5a78b382aa77e54025p@chr17:54543635..54543636, +
1.48e-40FFCP PHASE1:Hg19::chr17:54543642..54543647,+#_f37d67fbe5f33a5a78b382aa77e54025p@chr17:54543642..54543647, +
1.48e-40FFCP PHASE2:Hg19::chr17:54543635..54543636,+#_f37d67fbe5f33a5a78b382aa77e54025p@chr17:54543635..54543636, +
1.48e-40FFCP PHASE2:Hg19::chr17:54543642..54543647,+#_f37d67fbe5f33a5a78b382aa77e54025p@chr17:54543642..54543647, +
1.81e-40FFCP PHASE2:Hg19::chr16:82788994..82789018,+#_b7610f15e04e7d99c71c5f9eab2d65b1p@chr16:82788994..82789018, +
1.81e-40FFCP PHASE2:Hg19::chr12:105889929..105889933,+#_b7610f15e04e7d99c71c5f9eab2d65b1+, p@chr12:105889929..105889933
1.81e-40FFCP PHASE1:Hg19::chr16:82788994..82789018,+#_b7610f15e04e7d99c71c5f9eab2d65b1p@chr16:82788994..82789018, +
1.81e-40FFCP PHASE1:Hg19::chr12:105889929..105889933,+#_b7610f15e04e7d99c71c5f9eab2d65b1p@chr12:105889929..105889933, +
2.55e-40FFCP PHASE2:Hg19::chr5:63803524..63803561,+#_74d0efd26b61db8973670d23e1f96055p15@RGS7BP
2.55e-40FFCP PHASE1:Hg19::chr5:63803524..63803561,+#_74d0efd26b61db8973670d23e1f96055p15@RGS7BP
6.5e-40FFCP PHASE2:Hg19::chr21:27284505..27284518,-#_12b4c874b1cb72babcc020b6b550fe7dp@chr21:27284505..27284518, -
6.5e-40FFCP PHASE1:Hg19::chr21:27284505..27284518,-#_12b4c874b1cb72babcc020b6b550fe7dp@chr21:27284505..27284518, -
1.39e-36FFCP PHASE1:Hg19::chr1:172926077..172926120,-#_6ed5ae85e05333386c4cce71eea37b81p@chr1:172926077..172926120, -
1.39e-36FFCP PHASE2:Hg19::chr1:172926077..172926120,-#_6ed5ae85e05333386c4cce71eea37b81p@chr1:172926077..172926120, -
1.78e-36FFCP PHASE2:Hg19::chr19:7861475..7861491,+#_2269aeccc95ebdd23843933031ea0366p@chr19:7861475..7861491, +
1.78e-36FFCP PHASE1:Hg19::chr19:7861475..7861491,+#_2269aeccc95ebdd23843933031ea0366p@chr19:7861475..7861491, +
1.79e-33FFCP PHASE2:Hg19::chr10:59999608..59999621,-#_970d77e476139fcceecce376beb9d61cp@chr10:59999608..59999621, -
1.79e-33FFCP PHASE1:Hg19::chr10:59999608..59999621,-#_970d77e476139fcceecce376beb9d61cp@chr10:59999608..59999621, -
5.98e-33FFCP PHASE2:Hg19::chr1:186946611..186946622,+#_79583f933cf2d0ac864c621a8957b1b9p@chr1:186946611..186946622, +
5.98e-33FFCP PHASE1:Hg19::chr1:186946611..186946622,+#_79583f933cf2d0ac864c621a8957b1b9p@chr1:186946611..186946622, +
1.56e-30FFCP PHASE2:Hg19::chr12:105863627..105863633,+#_a7b4117c746bdd9b7c026f875d133d34p@chr12:105863627..105863633, +
1.56e-30FFCP PHASE1:Hg19::chr12:105863627..105863633,+#_a7b4117c746bdd9b7c026f875d133d34p@chr12:105863627..105863633, +
2.53e-28FFCP PHASE1:Hg19::chr6:142622846..142622853,+#_509e90d817360d919d8909991b3525a4p12@GPR126
2.53e-28FFCP PHASE2:Hg19::chr6:142622846..142622853,+#_509e90d817360d919d8909991b3525a4p12@GPR126
4.32e-28FFCP PHASE1:Hg19::chr13:75941109..75941132,-#_70ffac78aa1c5eba6e14366059824291p@chr13:75941109..75941132, -
4.32e-28FFCP PHASE2:Hg19::chr13:75941109..75941132,-#_70ffac78aa1c5eba6e14366059824291p@chr13:75941109..75941132, -
4.41e-28FFCP PHASE1:Hg19::chr6:136359549..136359565,+#_e01b943e27ae5c418e310d6e877d47a8p2@AB384352
4.41e-28FFCP PHASE2:Hg19::chr6:136359549..136359565,+#_e01b943e27ae5c418e310d6e877d47a8p2@AB384352
2.72e-27FFCP PHASE1:Hg19::chr2:72789511..72789554,-#_266dc3544e4b5a47b532cd20b5fe5054p@chr2:72789511..72789554, -
2.72e-27FFCP PHASE2:Hg19::chr2:72789511..72789554,-#_266dc3544e4b5a47b532cd20b5fe5054-, p@chr2:72789511..72789554
3.11e-27FFCP PHASE1:Hg19::chr15:22545370..22545372,+#_a09d75fd16fb83d358c386d0002136b6p@chr15:22545370..22545372, +
3.11e-27FFCP PHASE2:Hg19::chr15:22545370..22545372,+#_a09d75fd16fb83d358c386d0002136b6p@chr15:22545370..22545372, +
4.63e-27FFCP PHASE2:Hg19::chr11:59876093..59876098,-#_e6505d71f47be8e47042da1afef860cdp@chr11:59876093..59876098, -
4.63e-27FFCP PHASE1:Hg19::chr11:59876093..59876098,-#_e6505d71f47be8e47042da1afef860cdp@chr11:59876093..59876098, -
1.3e-24FFCP PHASE1:Hg19::chr9:35754222..35754237,-#_9c32b8869f0c2c080ae2a7b726383ac7p3@MSMP
1.3e-24FFCP PHASE2:Hg19::chr9:35754222..35754237,-#_9c32b8869f0c2c080ae2a7b726383ac7p3@MSMP
1.02e-23FFCP PHASE2:Hg19::chr10:94607612..94607616,+#_17fd5865b337a18bdc605c8e75fd58b4p@chr10:94607612..94607616, +
1.02e-23FFCP PHASE1:Hg19::chr10:94607612..94607616,+#_17fd5865b337a18bdc605c8e75fd58b4p@chr10:94607612..94607616, +
1.14e-23FFCP PHASE2:Hg19::chr1:186946659..186946664,+#_18276e103911f7a904170a02fb87c9b5p@chr1:186946659..186946664, +
1.14e-23FFCP PHASE1:Hg19::chr1:186946659..186946664,+#_18276e103911f7a904170a02fb87c9b5p@chr1:186946659..186946664, +
1.28e-23FFCP PHASE2:Hg19::chr3:154801312..154801336,+#_052d5807c5c28d36cd2bea360675440dp29@MME
1.28e-23FFCP PHASE1:Hg19::chr3:154801312..154801336,+#_052d5807c5c28d36cd2bea360675440dp29@MME
1.81e-23FFCP PHASE1:Hg19::chr9:14231115..14231119,-#_0a63cd1a0c9c3a742e4dcbcf0d2986fap@chr9:14231115..14231119, -
1.81e-23FFCP PHASE2:Hg19::chr9:14231115..14231119,-#_0a63cd1a0c9c3a742e4dcbcf0d2986fap@chr9:14231115..14231119, -
1.24e-22FFCP PHASE1:Hg19::chr9:139563124..139563129,+#_dec7335e372a2d09769399e4893ce369p@chr9:139563124..139563129, +
1.24e-22FFCP PHASE2:Hg19::chr9:139563124..139563129,+#_dec7335e372a2d09769399e4893ce369p@chr9:139563124..139563129, +
3.33e-22FFCP PHASE2:Hg19::chr10:94590895..94590905,+#_1cc4690fbebb0c2daf11c8ba6fd525f1p8@EXOC6
3.33e-22FFCP PHASE1:Hg19::chr10:94590895..94590905,+#_1cc4690fbebb0c2daf11c8ba6fd525f1p8@EXOC6
4.76e-22FFCP PHASE2:Hg19::chr10:50153703..50153720,+#_5d34bba44ecfeb3ebe3cb097084b4a25p7@WDFY4
4.76e-22FFCP PHASE1:Hg19::chr10:50153703..50153720,+#_5d34bba44ecfeb3ebe3cb097084b4a25p7@WDFY4
4.21e-21FFCP PHASE1:Hg19::chr16:4181309..4181310,-#_e1d6a2857ba8159394e49e96f110eac6p@chr16:4181309..4181310, -
4.21e-21FFCP PHASE2:Hg19::chr16:4181309..4181310,-#_e1d6a2857ba8159394e49e96f110eac6p@chr16:4181309..4181310, -
4.21e-21FFCP PHASE2:Hg19::chr4:86684588..86684603,-#_e1d6a2857ba8159394e49e96f110eac6p@chr4:86684588..86684603, -
4.21e-21FFCP PHASE1:Hg19::chr4:86684588..86684603,-#_e1d6a2857ba8159394e49e96f110eac6p@chr4:86684588..86684603, -
5.15e-21FFCP PHASE1:Hg19::chr2:56216738..56216739,-#_bb3f4f82c1a716e34e76162af1ff59f5p@chr2:56216738..56216739, -
5.15e-21FFCP PHASE2:Hg19::chr2:56216738..56216739,-#_bb3f4f82c1a716e34e76162af1ff59f5p@chr2:56216738..56216739, -
5.15e-21FFCP PHASE2:Hg19::chr19:7861495..7861500,+#_bb3f4f82c1a716e34e76162af1ff59f5p@chr19:7861495..7861500, +
5.15e-21FFCP PHASE1:Hg19::chr19:7861495..7861500,+#_bb3f4f82c1a716e34e76162af1ff59f5p@chr19:7861495..7861500, +
7.89e-20FFCP PHASE2:Hg19::chr12:96841308..96841312,+#_f2f17d3fd4535d9bb4f210d5c5b1557dp@chr12:96841308..96841312, +
7.89e-20FFCP PHASE1:Hg19::chr12:96841308..96841312,+#_f2f17d3fd4535d9bb4f210d5c5b1557dp@chr12:96841308..96841312, +
4.08e-19FFCP PHASE1:Hg19::chr21:39869867..39869880,-#_473b25541436b69f40cb712507a36994p@chr21:39869867..39869880, -
4.08e-19FFCP PHASE2:Hg19::chr21:39869867..39869880,-#_473b25541436b69f40cb712507a36994p@chr21:39869867..39869880, -
4.68e-19FFCP PHASE2:Hg19::chr12:105863705..105863718,+#_4975586bb6a900b61b9a03ef4d089b55p@chr12:105863705..105863718, +
4.68e-19FFCP PHASE1:Hg19::chr12:105863705..105863718,+#_4975586bb6a900b61b9a03ef4d089b55p@chr12:105863705..105863718, +
9.47e-19FFCP PHASE1:Hg19::chr5:21824001..21824014,+#_0730e736d130b6b6979b891248fc0766p@chr5:21824001..21824014, +
9.47e-19FFCP PHASE2:Hg19::chr5:21824001..21824014,+#_0730e736d130b6b6979b891248fc0766p@chr5:21824001..21824014, +
1.03e-18FFCP PHASE2:Hg19::chr10:50153735..50153750,+#_0228ed0508d82ee5f18efd571d721e86p6@WDFY4
1.03e-18FFCP PHASE1:Hg19::chr10:50153735..50153750,+#_0228ed0508d82ee5f18efd571d721e86p6@WDFY4
1.09e-18FFCP PHASE1:Hg19::chr12:10794718..10794741,+#_71e7a1e3d3c787366c9ae1c54f187a38+, p@chr12:10794718..10794741
1.09e-18FFCP PHASE2:Hg19::chr12:10794718..10794741,+#_71e7a1e3d3c787366c9ae1c54f187a38p@chr12:10794718..10794741, +
1.22e-18FFCP PHASE1:Hg19::chr6:78171746..78171769,+#_9ab41bd0f5af4b28e1ffdf0b88a1ceebp@chr6:78171746..78171769, +
1.22e-18FFCP PHASE2:Hg19::chr6:78171746..78171769,+#_9ab41bd0f5af4b28e1ffdf0b88a1ceebp@chr6:78171746..78171769, +
1.35e-18FFCP PHASE1:Hg19::chr2:197226784..197226793,-#_3e3e01bdfbb007d9a61faf864d81c130p21@HECW2
1.35e-18FFCP PHASE2:Hg19::chr2:197226784..197226793,-#_3e3e01bdfbb007d9a61faf864d81c130p21@HECW2
1.62e-18FFCP PHASE1:Hg19::chr3:169078072..169078076,-#_c24ac06e11ae409b6252a4af6e3216d2p@chr3:169078072..169078076, -
1.62e-18FFCP PHASE2:Hg19::chr3:169078072..169078076,-#_c24ac06e11ae409b6252a4af6e3216d2p@chr3:169078072..169078076, -
1.66e-18FFCP PHASE2:Hg19::chr1:61415107..61415136,-#_9c1ad2c51177b9f25aa7e7d072384b7fp@chr1:61415107..61415136, -
1.66e-18FFCP PHASE1:Hg19::chr1:61415107..61415136,-#_9c1ad2c51177b9f25aa7e7d072384b7fp@chr1:61415107..61415136, -
1.77e-18FFCP PHASE2:Hg19::chr2:18479033..18479051,+#_5a79115775acaf14ec8341961baf0fffp@chr2:18479033..18479051, +
1.77e-18FFCP PHASE1:Hg19::chr2:18479033..18479051,+#_5a79115775acaf14ec8341961baf0fffp@chr2:18479033..18479051, +
1.97e-18FFCP PHASE2:Hg19::chr10:94591023..94591034,+#_84412c6e3622f6c5201789939ca35df4p7@EXOC6
1.97e-18FFCP PHASE1:Hg19::chr10:94591023..94591034,+#_84412c6e3622f6c5201789939ca35df4p7@EXOC6