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UBERON:0002108

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Name:small intestine
Namespace:FANTOM
Definition:"Organ with organ cavity which is continuous proximally with the stomach and distally with the large intestine[FMA]. The passage from the posterior intestine, from the rectal valve to the opening to the exterior. // The terminal region of the mid intestine is comprised of specialized enterocytes that appear to play a role in mucosal immunity. <a href
Xrefs:
links:

AAO:0010397
BTO:0000651
EFO:0000841
EV:0100072
FMA:7200
GAID:313
galen:SmallIntestine
[1]
[ 200px-Stomach_colon_rectum_diagram.svg.png 200px-Stomach_colon_rectum_diagram.svg.png]
MA:0000337
MAT:0000047
MESH:A.03.492.411.620
MIAA:0000047
ncithesaurus:Small_Intestine
OpenCyc:Mx4rvVjlIJwpEbGdrcN5Y29ycA
SCTID:181250005
TAO:0001323
VHOG:0000055
XAO:0000130

ZFA:0001323
Synonyms: "anterior intestine" RELATED []
"intestinum tenue" RELATED [BTO:0000651]
"intestinum tenue" RELATED LATIN [Wikipedia:Small_intestine]
"mid intestine" RELATED []
"small bowel" EXACT []
"small intestine" EXACT []
Comments:This class was created automatically from a combination of ontologies
Alt_id: UBERON:FMA_7200-MA_0000337-MIAA_0000047-XAO_0000130-ZFA_0001323
Subset: major_organ
organ_slim
uberon_slim
vertebrate_core

Ontology association
Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.

link to ontology dataset
data


Parents

is_a:UBERON:0004921(subdivision of digestive tract),UBERON:0013765(digestive system element)
part_of:UBERON:0000160(intestine)



Children

derives from:FF:0010024 (human small intestine - adult sample),FF:0010064 (human small intestine - fetal sample),FF:0011425 (mouse small intestine- neonate N16 sample)
part of:UBERON:0001168 (wall of small intestine),UBERON:0001204 (mucosa of small intestine),UBERON:0001902 (epithelium of small intestine),UBERON:0002114 (duodenum),UBERON:0002116 (ileum),CL:0002254 (epithelial cell of small intestine),FF:0010064 (human small intestine - fetal sample)

Ontology Tree: Loaded from BioPortal


FF samples
It includes FANTOM5 samples that overlay the Uberon ontology


Human (Homo sapiens)

... further results Mouse (Mus musculus)

... further results


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0002108 (small intestine), sorted by p-values
Analyst: Hideya Kawaji

link to source dataset
human : data
mouse : data


P-valueFFCPShort description
7.76e-118FFCP PHASE1:Hg19::chr1:220292349..220292367,-#_435964a2e31fa1616664c20df1d104c9p@chr1:220292349..220292367, -
7.76e-118FFCP PHASE2:Hg19::chr5:176005056..176005065,+#_435964a2e31fa1616664c20df1d104c9p10@CDHR2
7.76e-118FFCP PHASE2:Hg19::chr11:116691672..116691682,-#_435964a2e31fa1616664c20df1d104c9p@chr11:116691672..116691682, -
7.76e-118FFCP PHASE2:Hg19::chr1:220292349..220292367,-#_435964a2e31fa1616664c20df1d104c9p@chr1:220292349..220292367, -
7.76e-118FFCP PHASE1:Hg19::chr11:619585..619593,-#_435964a2e31fa1616664c20df1d104c9p@chr11:619585..619593, -
7.76e-118FFCP PHASE1:Hg19::chr11:116691672..116691682,-#_435964a2e31fa1616664c20df1d104c9p@chr11:116691672..116691682, -
7.76e-118FFCP PHASE1:Hg19::chr11:65594646..65594649,-#_435964a2e31fa1616664c20df1d104c9p@chr11:65594646..65594649, -
7.76e-118FFCP PHASE1:Hg19::chr5:176005056..176005065,+#_435964a2e31fa1616664c20df1d104c9p10@CDHR2
7.76e-118FFCP PHASE2:Hg19::chr11:619585..619593,-#_435964a2e31fa1616664c20df1d104c9p@chr11:619585..619593, -
7.76e-118FFCP PHASE2:Hg19::chr11:65594646..65594649,-#_435964a2e31fa1616664c20df1d104c9p@chr11:65594646..65594649, -
6.64e-89FFCP PHASE1:Hg19::chr4:165675197..165675206,+#_7da718c66ffbce892e7ecea27df01f8fp1@ENST00000515485
6.64e-89FFCP PHASE1:Hg19::chr4:156787425..156787429,-#_7da718c66ffbce892e7ecea27df01f8fp1@ACCN5
6.64e-89FFCP PHASE2:Hg19::chr6:56558260..56558263,-#_7da718c66ffbce892e7ecea27df01f8fp154@DST
6.64e-89FFCP PHASE2:Hg19::chr4:165675197..165675206,+#_7da718c66ffbce892e7ecea27df01f8fp1@ENST00000515485
6.64e-89FFCP PHASE1:Hg19::chr6:56558260..56558263,-#_7da718c66ffbce892e7ecea27df01f8fp154@DST
6.64e-89FFCP PHASE2:Hg19::chr4:156787425..156787429,-#_7da718c66ffbce892e7ecea27df01f8fp1@ACCN5
6.64e-89FFCP PHASE1:Hg19::chr3:44248030..44248052,-#_7da718c66ffbce892e7ecea27df01f8fp@chr3:44248030..44248052, -
6.64e-89FFCP PHASE2:Hg19::chr3:44248030..44248052,-#_7da718c66ffbce892e7ecea27df01f8fp@chr3:44248030..44248052, -
8.98e-89FFCP PHASE1:Hg19::chr7:100686501..100686512,+#_c2755f66139126ee99ab7acf73f5fb79p4@MUC17
8.98e-89FFCP PHASE2:Hg19::chr11:621654..621664,-#_c2755f66139126ee99ab7acf73f5fb79p@chr11:621654..621664, -
8.98e-89FFCP PHASE1:Hg19::chr3:100328486..100328495,+#_c2755f66139126ee99ab7acf73f5fb79p4@GPR128
8.98e-89FFCP PHASE2:Hg19::chr7:100686501..100686512,+#_c2755f66139126ee99ab7acf73f5fb79p4@MUC17
8.98e-89FFCP PHASE1:Hg19::chr11:621654..621664,-#_c2755f66139126ee99ab7acf73f5fb79p@chr11:621654..621664, -
8.98e-89FFCP PHASE2:Hg19::chr3:100328486..100328495,+#_c2755f66139126ee99ab7acf73f5fb79p4@GPR128
1.21e-88FFCP PHASE1:Hg19::chr16:3704724..3704727,+#_849bb4c6ed2ffaaa85b232e877b0baf5p8@DNASE1
1.21e-88FFCP PHASE2:Hg19::chr5:132149207..132149222,+#_849bb4c6ed2ffaaa85b232e877b0baf5p9@SOWAHA
1.21e-88FFCP PHASE1:Hg19::chr5:132149207..132149222,+#_849bb4c6ed2ffaaa85b232e877b0baf5p9@SOWAHA
1.21e-88FFCP PHASE1:Hg19::chr2:211409943..211409950,+#_849bb4c6ed2ffaaa85b232e877b0baf5p@chr2:211409943..211409950, +
1.21e-88FFCP PHASE2:Hg19::chr2:211409943..211409950,+#_849bb4c6ed2ffaaa85b232e877b0baf5p@chr2:211409943..211409950, +
1.21e-88FFCP PHASE2:Hg19::chr16:3704724..3704727,+#_849bb4c6ed2ffaaa85b232e877b0baf5p8@DNASE1
1.64e-88FFCP PHASE2:Hg19::chr4:667307..667315,+#_7e50b2510dea7dbaf67c74c2b796d88dp17@MYL5
1.64e-88FFCP PHASE1:Hg19::chr4:667307..667315,+#_7e50b2510dea7dbaf67c74c2b796d88dp17@MYL5
1.64e-88FFCP PHASE2:Hg19::chr10:19489600..19489603,+#_7e50b2510dea7dbaf67c74c2b796d88dp@chr10:19489600..19489603, +
1.64e-88FFCP PHASE1:Hg19::chr10:19489600..19489603,+#_7e50b2510dea7dbaf67c74c2b796d88dp@chr10:19489600..19489603, +
3.49e-79FFCP PHASE2:Hg19::chr10:102792271..102792279,-#_b946998361fa4f1c25de62773a32a310p@chr10:102792271..102792279, -
3.49e-79FFCP PHASE2:Hg19::chr15:42691624..42691627,+#_b946998361fa4f1c25de62773a32a310p@chr15:42691624..42691627, +
3.49e-79FFCP PHASE2:Hg19::chr5:1219157..1219189,+#_b946998361fa4f1c25de62773a32a310p7@SLC6A19
3.49e-79FFCP PHASE1:Hg19::chr10:102792271..102792279,-#_b946998361fa4f1c25de62773a32a310p@chr10:102792271..102792279, -
3.49e-79FFCP PHASE1:Hg19::chr15:42691624..42691627,+#_b946998361fa4f1c25de62773a32a310p@chr15:42691624..42691627, +
3.49e-79FFCP PHASE2:Hg19::chr1:27240046..27240053,-#_b946998361fa4f1c25de62773a32a310p8@NR0B2
3.49e-79FFCP PHASE2:Hg19::chr12:14831594..14831617,-#_b946998361fa4f1c25de62773a32a310-, p@chr12:14831594..14831617
3.49e-79FFCP PHASE1:Hg19::chr12:14831594..14831617,-#_b946998361fa4f1c25de62773a32a310-, p@chr12:14831594..14831617
3.49e-79FFCP PHASE2:Hg19::chr1:27240078..27240086,-#_b946998361fa4f1c25de62773a32a310p7@NR0B2
3.49e-79FFCP PHASE1:Hg19::chr1:27240046..27240053,-#_b946998361fa4f1c25de62773a32a310p8@NR0B2
3.49e-79FFCP PHASE1:Hg19::chr1:220292419..220292423,-#_b946998361fa4f1c25de62773a32a310p@chr1:220292419..220292423, -
3.49e-79FFCP PHASE2:Hg19::chr17:26818577..26818591,+#_b946998361fa4f1c25de62773a32a310p@chr17:26818577..26818591, +
3.49e-79FFCP PHASE1:Hg19::chr17:26818577..26818591,+#_b946998361fa4f1c25de62773a32a310p@chr17:26818577..26818591, +
3.49e-79FFCP PHASE2:Hg19::chr1:220292419..220292423,-#_b946998361fa4f1c25de62773a32a310p@chr1:220292419..220292423, -
3.49e-79FFCP PHASE1:Hg19::chr1:27240078..27240086,-#_b946998361fa4f1c25de62773a32a310p7@NR0B2
3.49e-79FFCP PHASE1:Hg19::chr5:1219157..1219189,+#_b946998361fa4f1c25de62773a32a310p7@SLC6A19
8.69e-79FFCP PHASE2:Hg19::chr2:201242740..201242755,+#_34fb8743a6f779cf1d15dd75a0d41ff2p25@SPATS2L
8.69e-79FFCP PHASE1:Hg19::chr2:201242740..201242755,+#_34fb8743a6f779cf1d15dd75a0d41ff2p25@SPATS2L
1.56e-71FFCP PHASE1:Hg19::chr11:65594666..65594676,-#_b64698bbda41ed82954e5e9e129749c6p@chr11:65594666..65594676, -
1.56e-71FFCP PHASE1:Hg19::chr7:100551219..100551228,+#_b64698bbda41ed82954e5e9e129749c6p26@MUC3A, p26@MUC3B
1.56e-71FFCP PHASE2:Hg19::chr3:124625556..124625575,-#_b64698bbda41ed82954e5e9e129749c6p@chr3:124625556..124625575, -
1.56e-71FFCP PHASE1:Hg19::chr3:124646562..124646577,+#_b64698bbda41ed82954e5e9e129749c6p@chr3:124646562..124646577, +
1.56e-71FFCP PHASE1:Hg19::chr22:41273544..41273549,-#_b64698bbda41ed82954e5e9e129749c6p@chr22:41273544..41273549, -
1.56e-71FFCP PHASE2:Hg19::chr6:46048116..46048129,-#_b64698bbda41ed82954e5e9e129749c6p10@CLIC5
1.56e-71FFCP PHASE1:Hg19::chr6:46048116..46048129,-#_b64698bbda41ed82954e5e9e129749c6p10@CLIC5
1.56e-71FFCP PHASE2:Hg19::chr3:124646562..124646577,+#_b64698bbda41ed82954e5e9e129749c6p@chr3:124646562..124646577, +
1.56e-71FFCP PHASE2:Hg19::chr11:65594666..65594676,-#_b64698bbda41ed82954e5e9e129749c6p@chr11:65594666..65594676, -
1.56e-71FFCP PHASE1:Hg19::chr3:164786944..164786952,-#_b64698bbda41ed82954e5e9e129749c6p@chr3:164786944..164786952, -
1.56e-71FFCP PHASE2:Hg19::chr15:45689405..45689411,-#_b64698bbda41ed82954e5e9e129749c6p21@GATM
1.56e-71FFCP PHASE2:Hg19::chr17:48352265..48352274,+#_b64698bbda41ed82954e5e9e129749c6p4@TMEM92
1.56e-71FFCP PHASE2:Hg19::chr4:82136518..82136527,-#_b64698bbda41ed82954e5e9e129749c6p5@PRKG2
1.56e-71FFCP PHASE1:Hg19::chr15:45689405..45689411,-#_b64698bbda41ed82954e5e9e129749c6p21@GATM
1.56e-71FFCP PHASE1:Hg19::chr3:124646421..124646431,-#_b64698bbda41ed82954e5e9e129749c6p8@MUC13
1.56e-71FFCP PHASE2:Hg19::chr22:41273544..41273549,-#_b64698bbda41ed82954e5e9e129749c6p@chr22:41273544..41273549, -
1.56e-71FFCP PHASE2:Hg19::chr3:124646421..124646431,-#_b64698bbda41ed82954e5e9e129749c6p8@MUC13
1.56e-71FFCP PHASE1:Hg19::chr8:145640636..145640647,-#_b64698bbda41ed82954e5e9e129749c6p11@SLC39A4
1.56e-71FFCP PHASE2:Hg19::chr8:145640636..145640647,-#_b64698bbda41ed82954e5e9e129749c6p11@SLC39A4
1.56e-71FFCP PHASE2:Hg19::chr7:100551219..100551228,+#_b64698bbda41ed82954e5e9e129749c6p26@MUC3A, p26@MUC3B
1.56e-71FFCP PHASE1:Hg19::chr4:82136518..82136527,-#_b64698bbda41ed82954e5e9e129749c6p5@PRKG2
1.56e-71FFCP PHASE2:Hg19::chr11:116691835..116691843,-#_b64698bbda41ed82954e5e9e129749c6p@chr11:116691835..116691843, -
1.56e-71FFCP PHASE2:Hg19::chr3:164786944..164786952,-#_b64698bbda41ed82954e5e9e129749c6p@chr3:164786944..164786952, -
1.56e-71FFCP PHASE1:Hg19::chr17:48352265..48352274,+#_b64698bbda41ed82954e5e9e129749c6p4@TMEM92
1.56e-71FFCP PHASE1:Hg19::chr11:116691835..116691843,-#_b64698bbda41ed82954e5e9e129749c6p@chr11:116691835..116691843, -
1.56e-71FFCP PHASE1:Hg19::chr3:124625556..124625575,-#_b64698bbda41ed82954e5e9e129749c6p@chr3:124625556..124625575, -
1.98e-71FFCP PHASE1:Hg19::chr1:86934569..86934578,+#_39de28d0956498d160745202dbfb0b4ep3@CLCA1
1.98e-71FFCP PHASE1:Hg19::chr3:164776780..164776815,-#_39de28d0956498d160745202dbfb0b4ep@chr3:164776780..164776815, -
1.98e-71FFCP PHASE2:Hg19::chr11:118404961..118404975,+#_39de28d0956498d160745202dbfb0b4ep10@TMEM25
1.98e-71FFCP PHASE1:Hg19::chr7:100551230..100551237,+#_39de28d0956498d160745202dbfb0b4ep27@MUC3A, p27@MUC3B
1.98e-71FFCP PHASE2:Hg19::chr6:49735878..49735918,+#_39de28d0956498d160745202dbfb0b4ep@chr6:49735878..49735918, +
1.98e-71FFCP PHASE2:Hg19::chr1:86934569..86934578,+#_39de28d0956498d160745202dbfb0b4ep3@CLCA1
1.98e-71FFCP PHASE2:Hg19::chr3:164776780..164776815,-#_39de28d0956498d160745202dbfb0b4ep@chr3:164776780..164776815, -
1.98e-71FFCP PHASE1:Hg19::chr4:57138426..57138434,+#_39de28d0956498d160745202dbfb0b4ep5@KIAA1211
1.98e-71FFCP PHASE1:Hg19::chr3:124646456..124646472,-#_39de28d0956498d160745202dbfb0b4ep5@MUC13
1.98e-71FFCP PHASE1:Hg19::chr6:49735878..49735918,+#_39de28d0956498d160745202dbfb0b4ep@chr6:49735878..49735918, +
1.98e-71FFCP PHASE2:Hg19::chr3:124646456..124646472,-#_39de28d0956498d160745202dbfb0b4ep5@MUC13
1.98e-71FFCP PHASE2:Hg19::chr7:100551230..100551237,+#_39de28d0956498d160745202dbfb0b4ep27@MUC3A, p27@MUC3B
1.98e-71FFCP PHASE2:Hg19::chr4:57138426..57138434,+#_39de28d0956498d160745202dbfb0b4ep5@KIAA1211
1.98e-71FFCP PHASE1:Hg19::chr11:118404961..118404975,+#_39de28d0956498d160745202dbfb0b4ep10@TMEM25
2.52e-71FFCP PHASE2:Hg19::chr6:24667649..24667660,-#_1f563d10183c067de93d33f35cd4a38ep12@TDP2
2.52e-71FFCP PHASE2:Hg19::chr22:39864954..39864993,+#_1f563d10183c067de93d33f35cd4a38e+, p@chr22:39864954..39864993
2.52e-71FFCP PHASE1:Hg19::chr1:120337001..120337022,-#_1f563d10183c067de93d33f35cd4a38ep@chr1:120337001..120337022, -
2.52e-71FFCP PHASE1:Hg19::chr8:145640522..145640534,-#_1f563d10183c067de93d33f35cd4a38ep12@SLC39A4
2.52e-71FFCP PHASE2:Hg19::chr8:145640522..145640534,-#_1f563d10183c067de93d33f35cd4a38ep12@SLC39A4
2.52e-71FFCP PHASE1:Hg19::chr17:77704749..77704760,+#_1f563d10183c067de93d33f35cd4a38ep3@ENPP7
2.52e-71FFCP PHASE1:Hg19::chr6:24667649..24667660,-#_1f563d10183c067de93d33f35cd4a38ep12@TDP2
2.52e-71FFCP PHASE1:Hg19::chr4:82136439..82136449,-#_1f563d10183c067de93d33f35cd4a38ep9@PRKG2










Property "Property value" (as page type) with input value "UBPROP:0000001 "The terminal region of the mid intestine is comprised of specialized enterocytes that appear to play a role in mucosal immunity. Wallace et al, 2005.[TAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.