Personal tools

UBERON:0002113

From FANTOM5_SSTAR

Jump to: navigation, search

Name:kidney
Namespace:FANTOM
Definition:"A paired organ which has the production of urine as its primary function." [Wikipedia:Kidney]
Xrefs:
links:

AAO:0000250
BTO:0000671
EFO:0000929
EV:0100096
FMA:7203
GAID:423
galen:Kidney
MA:0000368
MAT:0000119
MESH:A.05.810.453
MIAA:0000119
ncithesaurus:Kidney
OpenCyc:Mx4rvVjlYpwpEbGdrcN5Y29ycA
SCTID:181414000
TAO:0000529

XAO:0003267
Synonyms: "kidney" EXACT []
Alt_id: UBERON:FMA_7204-MA_0001683
UBERON:FMA_7205-MA_0001655
Subset: major_organ
organ_slim
uberon_slim
vertebrate_core

Ontology association
Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.

link to ontology dataset
data

Parents

is_a:UBERON:0000489(cavitated compound organ),UBERON:0005172(abdomen element),UBERON:0006554(urinary system structure),UBERON:0015212(lateral structure)
develops_from:UBERON:0003918(kidney mesenchyme),UBERON:0005095(kidney rudiment)
part_of:UBERON:0000916(abdomen),UBERON:0011143(upper urinary tract)



Children

is a:UBERON:0000080 (mesonephros),UBERON:0002120 (pronephros)
derives from:FF:0010017 (human kidney - adult sample),FF:0010045 (human kidney - fetal sample),FF:0011341 (mouse kidney- embryo E14 sample),FF:0011350 (mouse kidney- embryo E15 sample),FF:0011363 (mouse kidney- embryo E16 sample),FF:0011371 (mouse kidney- embryo E17 sample),FF:0011396 (mouse kidney- neonate N00 sample),FF:0011419 (mouse kidney- neonate N10 sample),FF:0011432 (mouse kidney- neonate N20 sample),FF:0011482 (mouse kidney- neonate N25 sample),FF:0011483 (mouse kidney- neonate N30 sample),FF:0011512 (mouse kidney- embryo E18 sample),FF:0100067 (kidney cell line sample),FF:0102733 (embryonic kidney cell line sample)
part of:UBERON:0001225 (cortex of kidney),CL:0002518 (kidney epithelial cell),UBERON:0004819 (kidney epithelium),UBERON:0005215 (kidney interstitium),UBERON:0006553 (renal duct),UBERON:0007684 (uriniferous tubule),UBERON:0008987 (renal parenchyma),UBERON:0009201 (nephric duct),UBERON:0010532 (primitive nephron),CL:1000497 (kidney cell),CL:1001318 (renal interstitial pericyte)

Ontology Tree: Loaded from BioPortal


FF samples
It includes FANTOM5 samples that overlay the Uberon ontology

Human (Homo sapiens)

... further results Mouse (Mus musculus)

... further results


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0002113 (kidney), sorted by p-values
Analyst: Hideya Kawaji

link to source dataset
human : data
mouse : data

P-valueFFCPShort description
1.73e-86FFCP PHASE2:Hg19::chr10:102495147..102495159,+#_0d1d1ffbce91036345930ae3eff923d7p4@PAX2
1.73e-86FFCP PHASE1:Hg19::chr10:102495147..102495159,+#_0d1d1ffbce91036345930ae3eff923d7p4@PAX2
2.28e-80FFCP PHASE2:Mm9::chr2:74542680..74542705,+#_aed6e5a8abe9236bbdaeb77440fd1f55p6@Hoxd8
2.28e-80FFCP PHASE1:Mm9::chr2:74542680..74542705,+#_aed6e5a8abe9236bbdaeb77440fd1f55p6@Hoxd8
3.64e-74FFCP PHASE2:Mm9::chr2:74542589..74542602,+#_68095423885ab9def956c4c08e2e3d76p8@Hoxd8
3.64e-74FFCP PHASE1:Mm9::chr2:74542589..74542602,+#_68095423885ab9def956c4c08e2e3d76p8@Hoxd8
5.03e-73FFCP PHASE2:Hg19::chr10:102505954..102505973,+#_a13a87c03c8555d5b650842f124205afp3@PAX2
5.03e-73FFCP PHASE1:Hg19::chr10:102505954..102505973,+#_a13a87c03c8555d5b650842f124205afp3@PAX2
3.13e-70FFCP PHASE2:Hg19::chr2:693380..693398,+#_41875a9cbdf39b005511b9e36f2726f3p@chr2:693380..693398, +
3.13e-70FFCP PHASE1:Hg19::chr2:693380..693398,+#_41875a9cbdf39b005511b9e36f2726f3p@chr2:693380..693398, +
5.44e-68FFCP PHASE2:Mm9::chr19:44824107..44824111,-#_82ee867ab4803a051fd71948caa2c084p@chr19:44824107..44824111, -
5.44e-68FFCP PHASE1:Mm9::chr19:44824107..44824111,-#_82ee867ab4803a051fd71948caa2c084p@chr19:44824107..44824111, -
6.57e-66FFCP PHASE1:Hg19::chr7:27219833..27219845,-#_64c727392ba149f604afddda9c050169p7@HOXA10
6.57e-66FFCP PHASE2:Hg19::chr7:27219833..27219845,-#_64c727392ba149f604afddda9c050169p7@HOXA10
2.27e-64FFCP PHASE2:Hg19::chr10:102505493..102505546,+#_a3f6771b658f67b82e7752edf3df18bfp2@PAX2
2.27e-64FFCP PHASE1:Hg19::chr10:102505493..102505546,+#_a3f6771b658f67b82e7752edf3df18bfp2@PAX2
2.61e-63FFCP PHASE1:Hg19::chr9:133986782..133986794,+#_46acaa2ca4fa45f01030cd00726ef3c8p4@AIF1L
2.61e-63FFCP PHASE2:Hg19::chr9:133986782..133986794,+#_46acaa2ca4fa45f01030cd00726ef3c8p4@AIF1L
9.07e-63FFCP PHASE2:Hg19::chr1:81001398..81001426,+#_fbc863096a7f03eb07223051ad104e14p1@ENST00000418041, p1@ENST00000443104
9.07e-63FFCP PHASE1:Hg19::chr1:81001398..81001426,+#_fbc863096a7f03eb07223051ad104e14p1@ENST00000418041, p1@ENST00000443104
1.43e-62FFCP PHASE1:Mm9::chr10:3291561..3291580,+#_20cc53a067fb0b9f671e3c1d232d1b11p@chr10:3291561..3291580, +
1.43e-62FFCP PHASE2:Mm9::chr10:3291561..3291580,+#_20cc53a067fb0b9f671e3c1d232d1b11p@chr10:3291561..3291580, +
7.58e-62FFCP PHASE2:Mm9::chr19:44899724..44899728,+#_988580a7b7b097788f2299f0944be558p@chr19:44899724..44899728, +
7.58e-62FFCP PHASE2:Mm9::chr19:44821149..44821161,+#_988580a7b7b097788f2299f0944be558p@chr19:44821149..44821161, +
7.58e-62FFCP PHASE1:Mm9::chr19:44821149..44821161,+#_988580a7b7b097788f2299f0944be558p@chr19:44821149..44821161, +
7.58e-62FFCP PHASE1:Mm9::chr19:44899724..44899728,+#_988580a7b7b097788f2299f0944be558p@chr19:44899724..44899728, +
4.78e-61FFCP PHASE2:Hg19::chr15:66420804..66420837,-#_aa2fb09f941bde61ae5c288fe085662bp4@MEGF11
4.78e-61FFCP PHASE1:Hg19::chr15:66420804..66420837,-#_aa2fb09f941bde61ae5c288fe085662bp4@MEGF11
1.07e-59FFCP PHASE1:Mm9::chr8:107148422..107148433,+#_c58171c0f40cb8bbdfcfe7c8e7d4eb11p@chr8:107148422..107148433, +
1.07e-59FFCP PHASE2:Mm9::chr8:107148422..107148433,+#_c58171c0f40cb8bbdfcfe7c8e7d4eb11p@chr8:107148422..107148433, +
6.23e-58FFCP PHASE1:Mm9::chr10:50689167..50689171,+#_54e05fde1265853a156f1d35d8a2dc0cp@chr10:50689167..50689171, +
6.23e-58FFCP PHASE2:Mm9::chr10:50689167..50689171,+#_54e05fde1265853a156f1d35d8a2dc0cp@chr10:50689167..50689171, +
8.0e-58FFCP PHASE2:Mm9::chr5:24755801..24755819,+#_b545b2203bfc3b62e18cb0d98d2fc64bp@chr5:24755801..24755819, +
8.0e-58FFCP PHASE1:Mm9::chr5:24755801..24755819,+#_b545b2203bfc3b62e18cb0d98d2fc64bp@chr5:24755801..24755819, +
1.03e-57FFCP PHASE2:Mm9::chr19:59532611..59532623,+#_8405bf0fb123577b459e38914aa67a90p@chr19:59532611..59532623, +
1.03e-57FFCP PHASE1:Mm9::chr19:59532611..59532623,+#_8405bf0fb123577b459e38914aa67a90p@chr19:59532611..59532623, +
2.2e-56FFCP PHASE1:Mm9::chr4:44956599..44956663,+#_ad82d226d875eb4e1e555d5388780761p1@ENSMUST00000154177
2.2e-56FFCP PHASE2:Mm9::chr4:44956599..44956663,+#_ad82d226d875eb4e1e555d5388780761p1@ENSMUST00000154177
9.89e-56FFCP PHASE2:Mm9::chr7:31244771..31244782,+#_a424da522af4a2324101bf0c5c1afc64p2@Nphs1
9.89e-56FFCP PHASE1:Mm9::chr10:50622895..50622905,+#_a424da522af4a2324101bf0c5c1afc64p@chr10:50622895..50622905, +
9.89e-56FFCP PHASE1:Mm9::chr10:39251651..39251690,+#_a424da522af4a2324101bf0c5c1afc64p@chr10:39251651..39251690, +
9.89e-56FFCP PHASE1:Mm9::chr2:74971765..74971779,-#_a424da522af4a2324101bf0c5c1afc64p@chr2:74971765..74971779, -
9.89e-56FFCP PHASE2:Mm9::chr10:50622895..50622905,+#_a424da522af4a2324101bf0c5c1afc64p@chr10:50622895..50622905, +
9.89e-56FFCP PHASE1:Mm9::chr10:51915118..51915138,-#_a424da522af4a2324101bf0c5c1afc64p4@Ros1
9.89e-56FFCP PHASE1:Mm9::chr7:47891824..47891827,-#_a424da522af4a2324101bf0c5c1afc64p@chr7:47891824..47891827, -
9.89e-56FFCP PHASE1:Mm9::chr5:5694436..5694447,-#_a424da522af4a2324101bf0c5c1afc64p7@Steap2
9.89e-56FFCP PHASE1:Mm9::chr7:31244771..31244782,+#_a424da522af4a2324101bf0c5c1afc64p2@Nphs1
9.89e-56FFCP PHASE1:Mm9::chr1:89952042..89952053,+#_a424da522af4a2324101bf0c5c1afc64p2@LOC100048662, p2@LOC100048744, p2@Ugt1a10
9.89e-56FFCP PHASE1:Mm9::chr10:79277411..79277429,+#_a424da522af4a2324101bf0c5c1afc64p@chr10:79277411..79277429, +
9.89e-56FFCP PHASE2:Mm9::chr1:89952042..89952053,+#_a424da522af4a2324101bf0c5c1afc64p2@LOC100048662, p2@LOC100048744, p2@Ugt1a10
9.89e-56FFCP PHASE2:Mm9::chr19:17554168..17554181,+#_a424da522af4a2324101bf0c5c1afc64p@chr19:17554168..17554181, +
9.89e-56FFCP PHASE2:Mm9::chr10:39251651..39251690,+#_a424da522af4a2324101bf0c5c1afc64p@chr10:39251651..39251690, +
9.89e-56FFCP PHASE2:Mm9::chr7:47891824..47891827,-#_a424da522af4a2324101bf0c5c1afc64p@chr7:47891824..47891827, -
9.89e-56FFCP PHASE2:Mm9::chr2:74971765..74971779,-#_a424da522af4a2324101bf0c5c1afc64p@chr2:74971765..74971779, -
9.89e-56FFCP PHASE2:Mm9::chr7:126785928..126785945,-#_a424da522af4a2324101bf0c5c1afc64p3@uc009jll.1
9.89e-56FFCP PHASE1:Mm9::chr8:118959620..118959632,-#_a424da522af4a2324101bf0c5c1afc64p@chr8:118959620..118959632, -
9.89e-56FFCP PHASE2:Mm9::chr8:118959620..118959632,-#_a424da522af4a2324101bf0c5c1afc64p@chr8:118959620..118959632, -
9.89e-56FFCP PHASE2:Mm9::chr10:79277411..79277429,+#_a424da522af4a2324101bf0c5c1afc64+, p@chr10:79277411..79277429
9.89e-56FFCP PHASE2:Mm9::chr10:51915118..51915138,-#_a424da522af4a2324101bf0c5c1afc64p4@Ros1
9.89e-56FFCP PHASE1:Mm9::chr7:126785928..126785945,-#_a424da522af4a2324101bf0c5c1afc64p3@uc009jll.1
9.89e-56FFCP PHASE1:Mm9::chr19:17554168..17554181,+#_a424da522af4a2324101bf0c5c1afc64+, p@chr19:17554168..17554181
9.89e-56FFCP PHASE2:Mm9::chr5:5694436..5694447,-#_a424da522af4a2324101bf0c5c1afc64p7@Steap2
1.76e-55FFCP PHASE1:Hg19::chr18:3456189..3456200,+#_981abce6b09acd91e99658ddc43bbe06p@chr18:3456189..3456200, +
1.76e-55FFCP PHASE2:Hg19::chr18:3456189..3456200,+#_981abce6b09acd91e99658ddc43bbe06p@chr18:3456189..3456200, +
3.07e-55FFCP PHASE1:Hg19::chr9:119741711..119741743,-#_a400374eb2889efd6445ca52d90586eap@chr9:119741711..119741743, -
3.07e-55FFCP PHASE2:Hg19::chr9:119741711..119741743,-#_a400374eb2889efd6445ca52d90586eap@chr9:119741711..119741743, -
6.17e-52FFCP PHASE2:Mm9::chr11:75720190..75720216,-#_f7c11af8bf9c89d6d7f19863fef6dac7p@chr11:75720190..75720216, -
6.17e-52FFCP PHASE1:Mm9::chr11:75720190..75720216,-#_f7c11af8bf9c89d6d7f19863fef6dac7p@chr11:75720190..75720216, -
6.97e-52FFCP PHASE1:Mm9::chr13:108834249..108834299,+#_a03c2022dbdb4b25b34f66669d72650fp3@2810008M24Rik
6.97e-52FFCP PHASE2:Mm9::chr13:108834249..108834299,+#_a03c2022dbdb4b25b34f66669d72650fp3@2810008M24Rik
1.64e-51FFCP PHASE2:Mm9::chr2:74975548..74975563,-#_56b82a729ee356a29e8ea9c1eb5bc2cbp1@ENSMUST00000143898
1.64e-51FFCP PHASE1:Mm9::chr2:74975548..74975563,-#_56b82a729ee356a29e8ea9c1eb5bc2cbp1@ENSMUST00000143898
6.24e-51FFCP PHASE2:Hg19::chr7:7606139..7606151,-#_63d3eca42b0ad1c52350e7febb1429f7p@chr7:7606139..7606151, -
6.24e-51FFCP PHASE1:Hg19::chr7:7606139..7606151,-#_63d3eca42b0ad1c52350e7febb1429f7p@chr7:7606139..7606151, -
1.67e-50FFCP PHASE2:Mm9::chr3:96637141..96637180,+#_31614da16c91ad181d476b7abc155c64p4@Pdzk1
1.67e-50FFCP PHASE1:Mm9::chr3:96637141..96637180,+#_31614da16c91ad181d476b7abc155c64p4@Pdzk1
2.31e-50FFCP PHASE1:Mm9::chr13:98786159..98786170,-#_7a071ea0a08e743b985b4b4ef35cdd23p8@Rgnef
2.31e-50FFCP PHASE2:Mm9::chr13:98786159..98786170,-#_7a071ea0a08e743b985b4b4ef35cdd23p8@Rgnef
2.36e-50FFCP PHASE1:Mm9::chr16:88563303..88563315,-#_32d4cc41dfa538e34da0bd9050277630p5@Cldn8
2.36e-50FFCP PHASE2:Mm9::chr16:88563303..88563315,-#_32d4cc41dfa538e34da0bd9050277630p5@Cldn8
2.38e-50FFCP PHASE2:Mm9::chr7:126785968..126785980,-#_1ed8bc8721e1e6431e04dea521612533p2@uc009jll.1
2.38e-50FFCP PHASE2:Mm9::chr10:12353875..12353921,-#_1ed8bc8721e1e6431e04dea521612533p@chr10:12353875..12353921, -
2.38e-50FFCP PHASE1:Mm9::chr7:126785968..126785980,-#_1ed8bc8721e1e6431e04dea521612533p2@uc009jll.1
2.38e-50FFCP PHASE2:Mm9::chr3:154257229..154257241,-#_1ed8bc8721e1e6431e04dea521612533p@chr3:154257229..154257241, -
2.38e-50FFCP PHASE2:Mm9::chr7:31244710..31244719,+#_1ed8bc8721e1e6431e04dea521612533p4@Nphs1
2.38e-50FFCP PHASE1:Mm9::chr3:154257229..154257241,-#_1ed8bc8721e1e6431e04dea521612533p@chr3:154257229..154257241, -
2.38e-50FFCP PHASE1:Mm9::chr7:31244710..31244719,+#_1ed8bc8721e1e6431e04dea521612533p4@Nphs1
2.38e-50FFCP PHASE1:Mm9::chr10:12353875..12353921,-#_1ed8bc8721e1e6431e04dea521612533p@chr10:12353875..12353921, -
3.53e-50FFCP PHASE2:Mm9::chr10:3291584..3291599,+#_b2d4bd6a4046829b291a735b9315ecfap@chr10:3291584..3291599, +
3.53e-50FFCP PHASE1:Mm9::chr10:3291584..3291599,+#_b2d4bd6a4046829b291a735b9315ecfap@chr10:3291584..3291599, +
5.98e-50FFCP PHASE1:Mm9::chr17:34764056..34764069,-#_adb5a7c66706e6a4b8ff00f26d7765d3p9@Ppt2
5.98e-50FFCP PHASE2:Mm9::chr17:34764056..34764069,-#_adb5a7c66706e6a4b8ff00f26d7765d3p9@Ppt2
6.48e-50FFCP PHASE1:Mm9::chr4:107817557..107817589,-#_2441805e5e8b4bfa2c386b1ac16b7099p5@Scp2
6.48e-50FFCP PHASE2:Mm9::chr4:107817557..107817589,-#_2441805e5e8b4bfa2c386b1ac16b7099p5@Scp2
7.43e-50FFCP PHASE1:Mm9::chr2:74543235..74543246,+#_d174822e9e106c0e80825ede2ea5236ep7@Hoxd8
7.43e-50FFCP PHASE2:Mm9::chr2:74543235..74543246,+#_d174822e9e106c0e80825ede2ea5236ep7@Hoxd8
1.21e-49FFCP PHASE2:Mm9::chr4:120486715..120486721,-#_2fc2bec7690c7ce7863ec16ead7ef5d0p@chr4:120486715..120486721, -
1.21e-49FFCP PHASE1:Mm9::chr4:120486715..120486721,-#_2fc2bec7690c7ce7863ec16ead7ef5d0p@chr4:120486715..120486721, -
1.21e-49FFCP PHASE1:Mm9::chr2:152447861..152447872,-#_2fc2bec7690c7ce7863ec16ead7ef5d0p@chr2:152447861..152447872, -
1.21e-49FFCP PHASE2:Mm9::chr14:71030002..71030013,-#_2fc2bec7690c7ce7863ec16ead7ef5d0p14@Epb4.9










Property "Property value" (as page type) with input value "UBPROP:0000001 "One of either of a pair of structures lying on either side of the dorsal aorta in which fluid balance is regulated and waste is excreted out in the form of urine.[AAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.

Retrieved from "http://f5-webapp2.gsc.riken.jp/5/sstar/index.php?title=UBERON:0002113&oldid=3277379"