UBERON:0002113
From FANTOM5_SSTAR
Name: | kidney | ||
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Namespace: | FANTOM | ||
Definition: | "A paired organ which has the production of urine as its primary function." [Wikipedia:Kidney] | ||
Xrefs: |
| ||
Synonyms: | "kidney" EXACT [] | ||
Alt_id: |
UBERON:FMA_7204-MA_0001683 UBERON:FMA_7205-MA_0001655 | ||
Subset: |
major_organ organ_slim uberon_slim vertebrate_core |
Ontology association
Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.
link to ontology dataset
data
Parents
is_a: | UBERON:0000489(cavitated compound organ),UBERON:0005172(abdomen element),UBERON:0006554(urinary system structure),UBERON:0015212(lateral structure) |
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develops_from: | UBERON:0003918(kidney mesenchyme),UBERON:0005095(kidney rudiment) |
part_of: | UBERON:0000916(abdomen),UBERON:0011143(upper urinary tract) |
Children
is a: | UBERON:0000080 (mesonephros),UBERON:0002120 (pronephros) |
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derives from: | FF:0010017 (human kidney - adult sample),FF:0010045 (human kidney - fetal sample),FF:0011341 (mouse kidney- embryo E14 sample),FF:0011350 (mouse kidney- embryo E15 sample),FF:0011363 (mouse kidney- embryo E16 sample),FF:0011371 (mouse kidney- embryo E17 sample),FF:0011396 (mouse kidney- neonate N00 sample),FF:0011419 (mouse kidney- neonate N10 sample),FF:0011432 (mouse kidney- neonate N20 sample),FF:0011482 (mouse kidney- neonate N25 sample),FF:0011483 (mouse kidney- neonate N30 sample),FF:0011512 (mouse kidney- embryo E18 sample),FF:0100067 (kidney cell line sample),FF:0102733 (embryonic kidney cell line sample) |
part of: | UBERON:0001225 (cortex of kidney),CL:0002518 (kidney epithelial cell),UBERON:0004819 (kidney epithelium),UBERON:0005215 (kidney interstitium),UBERON:0006553 (renal duct),UBERON:0007684 (uriniferous tubule),UBERON:0008987 (renal parenchyma),UBERON:0009201 (nephric duct),UBERON:0010532 (primitive nephron),CL:1000497 (kidney cell),CL:1001318 (renal interstitial pericyte) |
Ontology Tree: Loaded from BioPortal
FF samples
It includes FANTOM5 samples that overlay the Uberon ontology
Human (Homo sapiens)
- 10017-101C8 (kidney, adult, pool1)
- 10045-101F9 (kidney, fetal, pool1)
- 10088-102B7
- 10411-106B6 (renal cell carcinoma cell line:OS-RC-2)
- 10450-106F9 (embryonic kidney cell line: HEK293/SLAM untreated)
- 10451-106G1 (embryonic kidney cell line: HEK293/SLAM infection, 24hr)
- 10466-106H7
- 10471-106I3 (renal cell carcinoma cell line:TUHR10TKB)
- 10517-107E4
- 10518-107E5
... further results Mouse (Mus musculus)
- 10017-101C8 (kidney, adult, pool1)
- 10045-101F9 (kidney, fetal, pool1)
- 10088-102B7
- 10411-106B6 (renal cell carcinoma cell line:OS-RC-2)
- 10450-106F9 (embryonic kidney cell line: HEK293/SLAM untreated)
- 10451-106G1 (embryonic kidney cell line: HEK293/SLAM infection, 24hr)
- 10466-106H7
- 10471-106I3 (renal cell carcinoma cell line:TUHR10TKB)
- 10517-107E4
- 10518-107E5
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0002113 (kidney), sorted by p-values
Analyst: Hideya Kawaji
link to source dataset
human : data
mouse : data
P-value | FFCP | Short description |
---|---|---|
1.73e-86 | FFCP PHASE2:Hg19::chr10:102495147..102495159,+#_0d1d1ffbce91036345930ae3eff923d7 | p4@PAX2 |
1.73e-86 | FFCP PHASE1:Hg19::chr10:102495147..102495159,+#_0d1d1ffbce91036345930ae3eff923d7 | p4@PAX2 |
2.28e-80 | FFCP PHASE2:Mm9::chr2:74542680..74542705,+#_aed6e5a8abe9236bbdaeb77440fd1f55 | p6@Hoxd8 |
2.28e-80 | FFCP PHASE1:Mm9::chr2:74542680..74542705,+#_aed6e5a8abe9236bbdaeb77440fd1f55 | p6@Hoxd8 |
3.64e-74 | FFCP PHASE1:Mm9::chr2:74542589..74542602,+#_68095423885ab9def956c4c08e2e3d76 | p8@Hoxd8 |
3.64e-74 | FFCP PHASE2:Mm9::chr2:74542589..74542602,+#_68095423885ab9def956c4c08e2e3d76 | p8@Hoxd8 |
5.03e-73 | FFCP PHASE1:Hg19::chr10:102505954..102505973,+#_a13a87c03c8555d5b650842f124205af | p3@PAX2 |
5.03e-73 | FFCP PHASE2:Hg19::chr10:102505954..102505973,+#_a13a87c03c8555d5b650842f124205af | p3@PAX2 |
3.13e-70 | FFCP PHASE1:Hg19::chr2:693380..693398,+#_41875a9cbdf39b005511b9e36f2726f3 | p@chr2:693380..693398, + |
3.13e-70 | FFCP PHASE2:Hg19::chr2:693380..693398,+#_41875a9cbdf39b005511b9e36f2726f3 | p@chr2:693380..693398, + |
5.44e-68 | FFCP PHASE2:Mm9::chr19:44824107..44824111,-#_82ee867ab4803a051fd71948caa2c084 | p@chr19:44824107..44824111, - |
5.44e-68 | FFCP PHASE1:Mm9::chr19:44824107..44824111,-#_82ee867ab4803a051fd71948caa2c084 | p@chr19:44824107..44824111, - |
6.57e-66 | FFCP PHASE2:Hg19::chr7:27219833..27219845,-#_64c727392ba149f604afddda9c050169 | p7@HOXA10 |
6.57e-66 | FFCP PHASE1:Hg19::chr7:27219833..27219845,-#_64c727392ba149f604afddda9c050169 | p7@HOXA10 |
2.27e-64 | FFCP PHASE1:Hg19::chr10:102505493..102505546,+#_a3f6771b658f67b82e7752edf3df18bf | p2@PAX2 |
2.27e-64 | FFCP PHASE2:Hg19::chr10:102505493..102505546,+#_a3f6771b658f67b82e7752edf3df18bf | p2@PAX2 |
2.61e-63 | FFCP PHASE1:Hg19::chr9:133986782..133986794,+#_46acaa2ca4fa45f01030cd00726ef3c8 | p4@AIF1L |
2.61e-63 | FFCP PHASE2:Hg19::chr9:133986782..133986794,+#_46acaa2ca4fa45f01030cd00726ef3c8 | p4@AIF1L |
9.07e-63 | FFCP PHASE1:Hg19::chr1:81001398..81001426,+#_fbc863096a7f03eb07223051ad104e14 | p1@ENST00000418041, p1@ENST00000443104 |
9.07e-63 | FFCP PHASE2:Hg19::chr1:81001398..81001426,+#_fbc863096a7f03eb07223051ad104e14 | p1@ENST00000418041, p1@ENST00000443104 |
1.43e-62 | FFCP PHASE2:Mm9::chr10:3291561..3291580,+#_20cc53a067fb0b9f671e3c1d232d1b11 | p@chr10:3291561..3291580, + |
1.43e-62 | FFCP PHASE1:Mm9::chr10:3291561..3291580,+#_20cc53a067fb0b9f671e3c1d232d1b11 | p@chr10:3291561..3291580, + |
7.58e-62 | FFCP PHASE2:Mm9::chr19:44899724..44899728,+#_988580a7b7b097788f2299f0944be558 | p@chr19:44899724..44899728, + |
7.58e-62 | FFCP PHASE1:Mm9::chr19:44899724..44899728,+#_988580a7b7b097788f2299f0944be558 | p@chr19:44899724..44899728, + |
7.58e-62 | FFCP PHASE2:Mm9::chr19:44821149..44821161,+#_988580a7b7b097788f2299f0944be558 | p@chr19:44821149..44821161, + |
7.58e-62 | FFCP PHASE1:Mm9::chr19:44821149..44821161,+#_988580a7b7b097788f2299f0944be558 | p@chr19:44821149..44821161, + |
4.78e-61 | FFCP PHASE1:Hg19::chr15:66420804..66420837,-#_aa2fb09f941bde61ae5c288fe085662b | p4@MEGF11 |
4.78e-61 | FFCP PHASE2:Hg19::chr15:66420804..66420837,-#_aa2fb09f941bde61ae5c288fe085662b | p4@MEGF11 |
1.07e-59 | FFCP PHASE1:Mm9::chr8:107148422..107148433,+#_c58171c0f40cb8bbdfcfe7c8e7d4eb11 | p@chr8:107148422..107148433, + |
1.07e-59 | FFCP PHASE2:Mm9::chr8:107148422..107148433,+#_c58171c0f40cb8bbdfcfe7c8e7d4eb11 | p@chr8:107148422..107148433, + |
6.23e-58 | FFCP PHASE1:Mm9::chr10:50689167..50689171,+#_54e05fde1265853a156f1d35d8a2dc0c | p@chr10:50689167..50689171, + |
6.23e-58 | FFCP PHASE2:Mm9::chr10:50689167..50689171,+#_54e05fde1265853a156f1d35d8a2dc0c | p@chr10:50689167..50689171, + |
8.0e-58 | FFCP PHASE2:Mm9::chr5:24755801..24755819,+#_b545b2203bfc3b62e18cb0d98d2fc64b | p@chr5:24755801..24755819, + |
8.0e-58 | FFCP PHASE1:Mm9::chr5:24755801..24755819,+#_b545b2203bfc3b62e18cb0d98d2fc64b | p@chr5:24755801..24755819, + |
1.03e-57 | FFCP PHASE2:Mm9::chr19:59532611..59532623,+#_8405bf0fb123577b459e38914aa67a90 | p@chr19:59532611..59532623, + |
1.03e-57 | FFCP PHASE1:Mm9::chr19:59532611..59532623,+#_8405bf0fb123577b459e38914aa67a90 | p@chr19:59532611..59532623, + |
2.2e-56 | FFCP PHASE2:Mm9::chr4:44956599..44956663,+#_ad82d226d875eb4e1e555d5388780761 | p1@ENSMUST00000154177 |
2.2e-56 | FFCP PHASE1:Mm9::chr4:44956599..44956663,+#_ad82d226d875eb4e1e555d5388780761 | p1@ENSMUST00000154177 |
9.89e-56 | FFCP PHASE2:Mm9::chr10:51915118..51915138,-#_a424da522af4a2324101bf0c5c1afc64 | p4@Ros1 |
9.89e-56 | FFCP PHASE2:Mm9::chr5:5694436..5694447,-#_a424da522af4a2324101bf0c5c1afc64 | p7@Steap2 |
9.89e-56 | FFCP PHASE1:Mm9::chr2:74971765..74971779,-#_a424da522af4a2324101bf0c5c1afc64 | p@chr2:74971765..74971779, - |
9.89e-56 | FFCP PHASE1:Mm9::chr7:126785928..126785945,-#_a424da522af4a2324101bf0c5c1afc64 | p3@uc009jll.1 |
9.89e-56 | FFCP PHASE1:Mm9::chr19:17554168..17554181,+#_a424da522af4a2324101bf0c5c1afc64 | +, p@chr19:17554168..17554181 |
9.89e-56 | FFCP PHASE1:Mm9::chr1:89952042..89952053,+#_a424da522af4a2324101bf0c5c1afc64 | p2@LOC100048662, p2@LOC100048744, p2@Ugt1a10 |
9.89e-56 | FFCP PHASE2:Mm9::chr10:50622895..50622905,+#_a424da522af4a2324101bf0c5c1afc64 | p@chr10:50622895..50622905, + |
9.89e-56 | FFCP PHASE2:Mm9::chr7:31244771..31244782,+#_a424da522af4a2324101bf0c5c1afc64 | p2@Nphs1 |
9.89e-56 | FFCP PHASE1:Mm9::chr5:5694436..5694447,-#_a424da522af4a2324101bf0c5c1afc64 | p7@Steap2 |
9.89e-56 | FFCP PHASE1:Mm9::chr10:50622895..50622905,+#_a424da522af4a2324101bf0c5c1afc64 | p@chr10:50622895..50622905, + |
9.89e-56 | FFCP PHASE1:Mm9::chr10:39251651..39251690,+#_a424da522af4a2324101bf0c5c1afc64 | p@chr10:39251651..39251690, + |
9.89e-56 | FFCP PHASE1:Mm9::chr10:51915118..51915138,-#_a424da522af4a2324101bf0c5c1afc64 | p4@Ros1 |
9.89e-56 | FFCP PHASE1:Mm9::chr7:47891824..47891827,-#_a424da522af4a2324101bf0c5c1afc64 | p@chr7:47891824..47891827, - |
9.89e-56 | FFCP PHASE1:Mm9::chr7:31244771..31244782,+#_a424da522af4a2324101bf0c5c1afc64 | p2@Nphs1 |
9.89e-56 | FFCP PHASE1:Mm9::chr10:79277411..79277429,+#_a424da522af4a2324101bf0c5c1afc64 | p@chr10:79277411..79277429, + |
9.89e-56 | FFCP PHASE2:Mm9::chr1:89952042..89952053,+#_a424da522af4a2324101bf0c5c1afc64 | p2@LOC100048662, p2@LOC100048744, p2@Ugt1a10 |
9.89e-56 | FFCP PHASE2:Mm9::chr19:17554168..17554181,+#_a424da522af4a2324101bf0c5c1afc64 | p@chr19:17554168..17554181, + |
9.89e-56 | FFCP PHASE2:Mm9::chr7:47891824..47891827,-#_a424da522af4a2324101bf0c5c1afc64 | p@chr7:47891824..47891827, - |
9.89e-56 | FFCP PHASE2:Mm9::chr10:39251651..39251690,+#_a424da522af4a2324101bf0c5c1afc64 | p@chr10:39251651..39251690, + |
9.89e-56 | FFCP PHASE2:Mm9::chr7:126785928..126785945,-#_a424da522af4a2324101bf0c5c1afc64 | p3@uc009jll.1 |
9.89e-56 | FFCP PHASE2:Mm9::chr2:74971765..74971779,-#_a424da522af4a2324101bf0c5c1afc64 | p@chr2:74971765..74971779, - |
9.89e-56 | FFCP PHASE1:Mm9::chr8:118959620..118959632,-#_a424da522af4a2324101bf0c5c1afc64 | p@chr8:118959620..118959632, - |
9.89e-56 | FFCP PHASE2:Mm9::chr8:118959620..118959632,-#_a424da522af4a2324101bf0c5c1afc64 | p@chr8:118959620..118959632, - |
9.89e-56 | FFCP PHASE2:Mm9::chr10:79277411..79277429,+#_a424da522af4a2324101bf0c5c1afc64 | +, p@chr10:79277411..79277429 |
1.76e-55 | FFCP PHASE1:Hg19::chr18:3456189..3456200,+#_981abce6b09acd91e99658ddc43bbe06 | p@chr18:3456189..3456200, + |
1.76e-55 | FFCP PHASE2:Hg19::chr18:3456189..3456200,+#_981abce6b09acd91e99658ddc43bbe06 | p@chr18:3456189..3456200, + |
3.07e-55 | FFCP PHASE1:Hg19::chr9:119741711..119741743,-#_a400374eb2889efd6445ca52d90586ea | p@chr9:119741711..119741743, - |
3.07e-55 | FFCP PHASE2:Hg19::chr9:119741711..119741743,-#_a400374eb2889efd6445ca52d90586ea | p@chr9:119741711..119741743, - |
6.17e-52 | FFCP PHASE2:Mm9::chr11:75720190..75720216,-#_f7c11af8bf9c89d6d7f19863fef6dac7 | p@chr11:75720190..75720216, - |
6.17e-52 | FFCP PHASE1:Mm9::chr11:75720190..75720216,-#_f7c11af8bf9c89d6d7f19863fef6dac7 | p@chr11:75720190..75720216, - |
6.97e-52 | FFCP PHASE2:Mm9::chr13:108834249..108834299,+#_a03c2022dbdb4b25b34f66669d72650f | p3@2810008M24Rik |
6.97e-52 | FFCP PHASE1:Mm9::chr13:108834249..108834299,+#_a03c2022dbdb4b25b34f66669d72650f | p3@2810008M24Rik |
1.64e-51 | FFCP PHASE1:Mm9::chr2:74975548..74975563,-#_56b82a729ee356a29e8ea9c1eb5bc2cb | p1@ENSMUST00000143898 |
1.64e-51 | FFCP PHASE2:Mm9::chr2:74975548..74975563,-#_56b82a729ee356a29e8ea9c1eb5bc2cb | p1@ENSMUST00000143898 |
6.24e-51 | FFCP PHASE2:Hg19::chr7:7606139..7606151,-#_63d3eca42b0ad1c52350e7febb1429f7 | p@chr7:7606139..7606151, - |
6.24e-51 | FFCP PHASE1:Hg19::chr7:7606139..7606151,-#_63d3eca42b0ad1c52350e7febb1429f7 | p@chr7:7606139..7606151, - |
1.67e-50 | FFCP PHASE2:Mm9::chr3:96637141..96637180,+#_31614da16c91ad181d476b7abc155c64 | p4@Pdzk1 |
1.67e-50 | FFCP PHASE1:Mm9::chr3:96637141..96637180,+#_31614da16c91ad181d476b7abc155c64 | p4@Pdzk1 |
2.31e-50 | FFCP PHASE1:Mm9::chr13:98786159..98786170,-#_7a071ea0a08e743b985b4b4ef35cdd23 | p8@Rgnef |
2.31e-50 | FFCP PHASE2:Mm9::chr13:98786159..98786170,-#_7a071ea0a08e743b985b4b4ef35cdd23 | p8@Rgnef |
2.36e-50 | FFCP PHASE2:Mm9::chr16:88563303..88563315,-#_32d4cc41dfa538e34da0bd9050277630 | p5@Cldn8 |
2.36e-50 | FFCP PHASE1:Mm9::chr16:88563303..88563315,-#_32d4cc41dfa538e34da0bd9050277630 | p5@Cldn8 |
2.38e-50 | FFCP PHASE1:Mm9::chr7:31244710..31244719,+#_1ed8bc8721e1e6431e04dea521612533 | p4@Nphs1 |
2.38e-50 | FFCP PHASE2:Mm9::chr7:126785968..126785980,-#_1ed8bc8721e1e6431e04dea521612533 | p2@uc009jll.1 |
2.38e-50 | FFCP PHASE2:Mm9::chr10:12353875..12353921,-#_1ed8bc8721e1e6431e04dea521612533 | p@chr10:12353875..12353921, - |
2.38e-50 | FFCP PHASE1:Mm9::chr10:12353875..12353921,-#_1ed8bc8721e1e6431e04dea521612533 | p@chr10:12353875..12353921, - |
2.38e-50 | FFCP PHASE1:Mm9::chr7:126785968..126785980,-#_1ed8bc8721e1e6431e04dea521612533 | p2@uc009jll.1 |
2.38e-50 | FFCP PHASE1:Mm9::chr3:154257229..154257241,-#_1ed8bc8721e1e6431e04dea521612533 | p@chr3:154257229..154257241, - |
2.38e-50 | FFCP PHASE2:Mm9::chr3:154257229..154257241,-#_1ed8bc8721e1e6431e04dea521612533 | p@chr3:154257229..154257241, - |
2.38e-50 | FFCP PHASE2:Mm9::chr7:31244710..31244719,+#_1ed8bc8721e1e6431e04dea521612533 | p4@Nphs1 |
3.53e-50 | FFCP PHASE2:Mm9::chr10:3291584..3291599,+#_b2d4bd6a4046829b291a735b9315ecfa | p@chr10:3291584..3291599, + |
3.53e-50 | FFCP PHASE1:Mm9::chr10:3291584..3291599,+#_b2d4bd6a4046829b291a735b9315ecfa | p@chr10:3291584..3291599, + |
5.98e-50 | FFCP PHASE1:Mm9::chr17:34764056..34764069,-#_adb5a7c66706e6a4b8ff00f26d7765d3 | p9@Ppt2 |
5.98e-50 | FFCP PHASE2:Mm9::chr17:34764056..34764069,-#_adb5a7c66706e6a4b8ff00f26d7765d3 | p9@Ppt2 |
6.48e-50 | FFCP PHASE1:Mm9::chr4:107817557..107817589,-#_2441805e5e8b4bfa2c386b1ac16b7099 | p5@Scp2 |
6.48e-50 | FFCP PHASE2:Mm9::chr4:107817557..107817589,-#_2441805e5e8b4bfa2c386b1ac16b7099 | p5@Scp2 |
7.43e-50 | FFCP PHASE1:Mm9::chr2:74543235..74543246,+#_d174822e9e106c0e80825ede2ea5236e | p7@Hoxd8 |
7.43e-50 | FFCP PHASE2:Mm9::chr2:74543235..74543246,+#_d174822e9e106c0e80825ede2ea5236e | p7@Hoxd8 |
1.21e-49 | FFCP PHASE2:Mm9::chr6:29809686..29809701,+#_2fc2bec7690c7ce7863ec16ead7ef5d0 | p13@Ahcyl2 |
1.21e-49 | FFCP PHASE2:Mm9::chr12:94512176..94512186,-#_2fc2bec7690c7ce7863ec16ead7ef5d0 | p@chr12:94512176..94512186, - |
1.21e-49 | FFCP PHASE2:Mm9::chr7:86741766..86741778,-#_2fc2bec7690c7ce7863ec16ead7ef5d0 | p@chr7:86741766..86741778, - |
1.21e-49 | FFCP PHASE1:Mm9::chr2:152447861..152447872,-#_2fc2bec7690c7ce7863ec16ead7ef5d0 | p@chr2:152447861..152447872, - |
Property "Property value" (as page type) with input value "UBPROP:0000001 "One of either of a pair of structures lying on either side of the dorsal aorta in which fluid balance is regulated and waste is excreted out in the form of urine.[AAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.