Personal tools

UBERON:0002185

From FANTOM5_SSTAR

Jump to: navigation, search

Name:bronchus
Namespace:FANTOM
Definition:"A portion of the airway that connects to the lungs[GO]." [Wikipedia:Bronchus]
Xrefs:
links:

BTO:0001340
EFO:0000932
EV:0100041
FMA:7409
GAID:346
[1]
[ 200px-Respiratory_system_complete_numbered.svg.png 200px-Respiratory_system_complete_numbered.svg.png]
MA:0000436
MAT:0000133
MESH:A.04.411.125
MIAA:0000133
ncithesaurus:Bronchus
SCTID:181215002
VHOG:0000262

XAO:0000121
Synonyms: "bronchi" EXACT PLURAL []
"bronchial tissue" RELATED [BTO:0001340]
"bronchial trunk" EXACT []
Alt_id: UBERON:FMA_7409-MA_0000436-MIAA_0000133-XAO_0000121
Subset: organ_slim
uberon_slim

Ontology association
Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.

link to ontology dataset
data


Parents

is_a:UBERON:0000117(respiratory tube)
part_of:UBERON:0007196(tracheobronchial tree)



Children

part of:UBERON:0002031 (epithelium of bronchus),CL:0002328 (bronchial epithelial cell),CL:0002598 (bronchial smooth muscle cell)

Ontology Tree: Loaded from BioPortal


FF samples
It includes FANTOM5 samples that overlay the Uberon ontology


Human (Homo sapiens)


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0002185 (bronchus), sorted by p-values
Analyst: Hideya Kawaji

link to source dataset
human : data
mouse : data


P-valueFFCPShort description
3.85e-51FFCP PHASE1:Hg19::chr3:189632708..189632721,-#_010fed21d963f35116552b203c50ecc2p@chr3:189632708..189632721, -
3.85e-51FFCP PHASE2:Hg19::chr3:189632708..189632721,-#_010fed21d963f35116552b203c50ecc2p@chr3:189632708..189632721, -
2.22e-40FFCP PHASE2:Hg19::chr1:209823455..209823467,-#_eb2b6453e0da5273c4405d6bd1db29d8p@chr1:209823455..209823467, -
2.22e-40FFCP PHASE1:Hg19::chr1:209823455..209823467,-#_eb2b6453e0da5273c4405d6bd1db29d8p@chr1:209823455..209823467, -
1.73e-30FFCP PHASE1:Hg19::chr1:95088552..95088567,+#_28d0572eb62da5d5e7bc1565f2ca559ep@chr1:95088552..95088567, +
1.73e-30FFCP PHASE2:Hg19::chr1:95088552..95088567,+#_28d0572eb62da5d5e7bc1565f2ca559ep@chr1:95088552..95088567, +
2.3e-28FFCP PHASE1:Hg19::chr1:3591362..3591369,-#_3a53adec326121572a36d8d61d0c8170p@chr1:3591362..3591369, -
2.3e-28FFCP PHASE2:Hg19::chr1:3591362..3591369,-#_3a53adec326121572a36d8d61d0c8170p@chr1:3591362..3591369, -
1.59e-27FFCP PHASE1:Hg19::chr2:113830230..113830233,-#_5f35f1a7f13d5f75a7b12444d2644e00p@chr2:113830230..113830233, -
1.59e-27FFCP PHASE2:Hg19::chr2:113830230..113830233,-#_5f35f1a7f13d5f75a7b12444d2644e00p@chr2:113830230..113830233, -
2.16e-26FFCP PHASE1:Hg19::chr10:73679250..73679255,-#_8f9dbbdd575fe7793ca4444ee667dd0ep@chr10:73679250..73679255, -
2.16e-26FFCP PHASE2:Hg19::chr10:73679250..73679255,-#_8f9dbbdd575fe7793ca4444ee667dd0ep@chr10:73679250..73679255, -
8.01e-25FFCP PHASE2:Hg19::chr1:9953308..9953320,-#_2980e6d79f4d84ab0ff388fca109e6a7p9@CTNNBIP1
8.01e-25FFCP PHASE1:Hg19::chr1:9953308..9953320,-#_2980e6d79f4d84ab0ff388fca109e6a7p9@CTNNBIP1
1.28e-23FFCP PHASE1:Hg19::chr17:48611912..48611919,+#_0e8ef6671c7fdb81f9a3c22bad558cebp7@EPN3
1.28e-23FFCP PHASE2:Hg19::chr17:48611912..48611919,+#_0e8ef6671c7fdb81f9a3c22bad558cebp7@EPN3
1.44e-23FFCP PHASE1:Hg19::chr7:135018332..135018336,+#_3d3cabf95a87cfd89127531ea2e9544d+, p@chr7:135018332..135018336
1.44e-23FFCP PHASE2:Hg19::chr7:135018332..135018336,+#_3d3cabf95a87cfd89127531ea2e9544dp@chr7:135018332..135018336, +
2.05e-23FFCP PHASE2:Hg19::chr1:95089255..95089279,-#_63dc579d69d82d8dae603bd58d77c539p1@ENST00000435559
2.05e-23FFCP PHASE1:Hg19::chr1:95089255..95089279,-#_63dc579d69d82d8dae603bd58d77c539p1@ENST00000435559
2.99e-23FFCP PHASE1:Hg19::chr17:48611940..48611947,+#_7c9910accc87773cf46cd8f97c93e20fp5@EPN3
2.99e-23FFCP PHASE2:Hg19::chr17:48611940..48611947,+#_7c9910accc87773cf46cd8f97c93e20fp5@EPN3
4.36e-23FFCP PHASE1:Hg19::chr2:74211227..74211238,+#_c2eb6186299a74fdaf0ea9d26f70b258p@chr2:74211227..74211238, +
4.36e-23FFCP PHASE2:Hg19::chr2:74211227..74211238,+#_c2eb6186299a74fdaf0ea9d26f70b258+, p@chr2:74211227..74211238
4.12e-22FFCP PHASE2:Hg19::chr17:38179639..38179652,-#_3d970896ce57aa126cc0980eef1e5817p7@MED24
4.12e-22FFCP PHASE1:Hg19::chr17:38179639..38179652,-#_3d970896ce57aa126cc0980eef1e5817p7@MED24
1.7e-21FFCP PHASE1:Hg19::chr20:14248741..14248745,-#_b5c25d53ccf740408acb383b9bb0582bp@chr20:14248741..14248745, -
1.7e-21FFCP PHASE2:Hg19::chr20:14248741..14248745,-#_b5c25d53ccf740408acb383b9bb0582bp@chr20:14248741..14248745, -
5.15e-21FFCP PHASE1:Hg19::chr1:27181551..27181558,-#_99fc3527a5098794d781574bd0051b74p@chr1:27181551..27181558, -
5.15e-21FFCP PHASE2:Hg19::chr1:27181551..27181558,-#_99fc3527a5098794d781574bd0051b74p@chr1:27181551..27181558, -
5.96e-21FFCP PHASE2:Hg19::chr17:38652393..38652403,-#_586831d63c59b96742f5040c09a012e9p16@TNS4
5.96e-21FFCP PHASE1:Hg19::chr17:38652393..38652403,-#_586831d63c59b96742f5040c09a012e9p16@TNS4
7.3e-21FFCP PHASE1:Hg19::chr1:153540420..153540455,+#_becab612231c98dbcf2a261a1e8f3b26p@chr1:153540420..153540455, +
7.3e-21FFCP PHASE2:Hg19::chr1:153540420..153540455,+#_becab612231c98dbcf2a261a1e8f3b26p@chr1:153540420..153540455, +
7.35e-21FFCP PHASE1:Hg19::chr11:94427497..94427507,-#_7b9c3521cad9f72173e6179419741b67p@chr11:94427497..94427507, -
7.35e-21FFCP PHASE2:Hg19::chr11:94427497..94427507,-#_7b9c3521cad9f72173e6179419741b67p@chr11:94427497..94427507, -
7.81e-21FFCP PHASE2:Hg19::chr12:52844247..52844256,-#_b251000296534795735beb3e73486692p@chr12:52844247..52844256, -
7.81e-21FFCP PHASE1:Hg19::chr12:52844247..52844256,-#_b251000296534795735beb3e73486692p@chr12:52844247..52844256, -
1.21e-20FFCP PHASE1:Hg19::chr3:190252374..190252383,-#_63511c474e3c6867fcfb140a91758e0dp@chr3:190252374..190252383, -
1.21e-20FFCP PHASE2:Hg19::chr3:190252374..190252383,-#_63511c474e3c6867fcfb140a91758e0dp@chr3:190252374..190252383, -
1.25e-20FFCP PHASE2:Hg19::chr1:183133608..183133625,-#_a2253880048f69332286fa21ca45076fp@chr1:183133608..183133625, -
1.25e-20FFCP PHASE1:Hg19::chr1:183133608..183133625,-#_a2253880048f69332286fa21ca45076fp@chr1:183133608..183133625, -
1.34e-20FFCP PHASE1:Hg19::chr8:29414184..29414190,+#_86667dc4d6f568384f3bc7ab3e5adcd1p@chr8:29414184..29414190, +
1.34e-20FFCP PHASE2:Hg19::chr8:29414184..29414190,+#_86667dc4d6f568384f3bc7ab3e5adcd1p@chr8:29414184..29414190, +
5.05e-20FFCP PHASE1:Hg19::chr14:67879076..67879080,+#_0bac83ac992bd52c4d719488a310f9f6p@chr14:67879076..67879080, +
5.05e-20FFCP PHASE2:Hg19::chr14:67879076..67879080,+#_0bac83ac992bd52c4d719488a310f9f6p@chr14:67879076..67879080, +
6.95e-20FFCP PHASE2:Hg19::chr1:209807970..209807983,-#_f5627b8ca9073f1b7c5ab33ca04da9bfp@chr1:209807970..209807983, -
6.95e-20FFCP PHASE1:Hg19::chr1:209807970..209807983,-#_f5627b8ca9073f1b7c5ab33ca04da9bfp@chr1:209807970..209807983, -
1.16e-19FFCP PHASE2:Hg19::chr6:83075367..83075383,-#_2f6aa9aade7107befb7b8a15dfa60890p@chr6:83075367..83075383, -
1.16e-19FFCP PHASE1:Hg19::chr6:83075367..83075383,-#_2f6aa9aade7107befb7b8a15dfa60890p@chr6:83075367..83075383, -
4.98e-19FFCP PHASE1:Hg19::chr4:15937715..15937733,-#_d3e1f506a33cf77bca804d6f1d4da6f1p@chr4:15937715..15937733, -
4.98e-19FFCP PHASE2:Hg19::chr4:15937715..15937733,-#_d3e1f506a33cf77bca804d6f1d4da6f1p@chr4:15937715..15937733, -
7.24e-19FFCP PHASE1:Hg19::chr13:61507880..61507904,-#_695b69d9d6c20920cdc7a43da3cea27dp@chr13:61507880..61507904, -
7.24e-19FFCP PHASE2:Hg19::chr13:61507880..61507904,-#_695b69d9d6c20920cdc7a43da3cea27d-, p@chr13:61507880..61507904
8.08e-19FFCP PHASE1:Hg19::chr9:26747081..26747110,+#_35aa5c92f32417e249a439bcb9dc77a6p@chr9:26747081..26747110, +
8.08e-19FFCP PHASE2:Hg19::chr9:26747081..26747110,+#_35aa5c92f32417e249a439bcb9dc77a6p@chr9:26747081..26747110, +
8.66e-19FFCP PHASE1:Hg19::chr1:152475755..152475761,+#_82f58f858a38979358d56e4284530e67p@chr1:152475755..152475761, +
8.66e-19FFCP PHASE2:Hg19::chr1:152475755..152475761,+#_82f58f858a38979358d56e4284530e67p@chr1:152475755..152475761, +
9.47e-19FFCP PHASE2:Hg19::chr4:82554167..82554171,+#_889e4254c8f51596690cefbaf4d6a79cp@chr4:82554167..82554171, +
9.47e-19FFCP PHASE1:Hg19::chr4:82554167..82554171,+#_889e4254c8f51596690cefbaf4d6a79cp@chr4:82554167..82554171, +
1.03e-18FFCP PHASE2:Hg19::chr11:120008883..120008884,-#_ed15f78ecf18b6303a68cbe2b06683a9p16@TRIM29
1.03e-18FFCP PHASE1:Hg19::chr11:120008883..120008884,-#_ed15f78ecf18b6303a68cbe2b06683a9p16@TRIM29
1.35e-18FFCP PHASE2:Hg19::chr15:76443020..76443024,-#_a224c53ce173a9812d96a88dc7405be1p@chr15:76443020..76443024, -
1.35e-18FFCP PHASE1:Hg19::chr15:76443020..76443024,-#_a224c53ce173a9812d96a88dc7405be1p@chr15:76443020..76443024, -
1.39e-18FFCP PHASE2:Hg19::chr17:39777017..39777027,+#_1b43eabfa4c4e204e4b31e52feab4f27p@chr17:39777017..39777027, +
1.39e-18FFCP PHASE1:Hg19::chr17:39777017..39777027,+#_1b43eabfa4c4e204e4b31e52feab4f27p@chr17:39777017..39777027, +
1.66e-18FFCP PHASE2:Hg19::chr1:209825932..209825936,-#_2c46fc2f3238bc5b0ca8202f723e8edbp10@LAMB3
1.66e-18FFCP PHASE1:Hg19::chr1:209825932..209825936,-#_2c46fc2f3238bc5b0ca8202f723e8edbp10@LAMB3
1.93e-18FFCP PHASE1:Hg19::chr1:156720278..156720286,+#_65b8d98cd57e38daa31edce0426bb862p15@PRCC
1.93e-18FFCP PHASE2:Hg19::chr1:156720278..156720286,+#_65b8d98cd57e38daa31edce0426bb862p15@PRCC
2.08e-18FFCP PHASE2:Hg19::chr17:39780624..39780631,-#_fdb325240978b7b4da3556c7c50570d1p8@KRT17
2.08e-18FFCP PHASE1:Hg19::chr17:39780624..39780631,-#_fdb325240978b7b4da3556c7c50570d1p8@KRT17
2.52e-18FFCP PHASE2:Hg19::chr14:94426721..94426726,+#_1470882ef486674a49c7d024685e666cp@chr14:94426721..94426726, +
2.52e-18FFCP PHASE1:Hg19::chr14:94426721..94426726,+#_1470882ef486674a49c7d024685e666cp@chr14:94426721..94426726, +
4.98e-18FFCP PHASE2:Hg19::chr12:52913881..52913889,+#_0e02f437e525e5cfe94d875aa56ed44dp@chr12:52913881..52913889, +
4.98e-18FFCP PHASE1:Hg19::chr12:52913881..52913889,+#_0e02f437e525e5cfe94d875aa56ed44d+, p@chr12:52913881..52913889
5.58e-18FFCP PHASE1:Hg19::chr17:73719483..73719489,-#_d84224703a2ec63dba55721014d9ef59p@chr17:73719483..73719489, -
5.58e-18FFCP PHASE2:Hg19::chr17:73719483..73719489,-#_d84224703a2ec63dba55721014d9ef59p@chr17:73719483..73719489, -
6.26e-18FFCP PHASE2:Hg19::chr1:209827520..209827532,-#_3389c006df711dc0520eff0d4c1e4b02p@chr1:209827520..209827532, -
6.26e-18FFCP PHASE1:Hg19::chr1:209827520..209827532,-#_3389c006df711dc0520eff0d4c1e4b02p@chr1:209827520..209827532, -
7.44e-18FFCP PHASE2:Hg19::chr12:56332022..56332030,+#_22ff722a9a088c36847deefc8bb05f40p17@DGKA
7.44e-18FFCP PHASE1:Hg19::chr12:56332022..56332030,+#_22ff722a9a088c36847deefc8bb05f40p17@DGKA
3.42e-17FFCP PHASE2:Hg19::chr17:38657781..38657786,-#_14004bf113d1e37d31995d7e97593cbap15@TNS4
3.42e-17FFCP PHASE1:Hg19::chr17:38657781..38657786,-#_14004bf113d1e37d31995d7e97593cbap15@TNS4
4.04e-17FFCP PHASE1:Hg19::chr1:55436540..55436544,-#_e064e8c2dc574bffd028badd81004535p@chr1:55436540..55436544, -
4.04e-17FFCP PHASE2:Hg19::chr1:55436540..55436544,-#_e064e8c2dc574bffd028badd81004535p@chr1:55436540..55436544, -
5.02e-17FFCP PHASE1:Hg19::chr1:153534013..153534025,+#_0952ff6c56d98865befd63029077719fp@chr1:153534013..153534025, +
5.02e-17FFCP PHASE2:Hg19::chr1:153534013..153534025,+#_0952ff6c56d98865befd63029077719f+, p@chr1:153534013..153534025
5.03e-17FFCP PHASE1:Hg19::chr2:70581573..70581577,-#_8dfceb8e41817f7f460ea727e0d10213p@chr2:70581573..70581577, -
5.03e-17FFCP PHASE2:Hg19::chr2:70581573..70581577,-#_8dfceb8e41817f7f460ea727e0d10213p@chr2:70581573..70581577, -
5.03e-17FFCP PHASE1:Hg19::chr19:48101913..48101916,-#_8dfceb8e41817f7f460ea727e0d10213p@chr19:48101913..48101916, -
5.03e-17FFCP PHASE2:Hg19::chr1:44446555..44446566,+#_8dfceb8e41817f7f460ea727e0d10213p16@B4GALT2
5.03e-17FFCP PHASE1:Hg19::chr1:44446555..44446566,+#_8dfceb8e41817f7f460ea727e0d10213p16@B4GALT2
5.03e-17FFCP PHASE2:Hg19::chr19:48101913..48101916,-#_8dfceb8e41817f7f460ea727e0d10213p@chr19:48101913..48101916, -
5.45e-17FFCP PHASE1:Hg19::chr2:20402306..20402318,-#_195ac632dcd9764b649bf551f12df54ep@chr2:20402306..20402318, -
5.45e-17FFCP PHASE2:Hg19::chr2:20402306..20402318,-#_195ac632dcd9764b649bf551f12df54ep@chr2:20402306..20402318, -
5.45e-17FFCP PHASE2:Hg19::chr1:46647115..46647118,-#_195ac632dcd9764b649bf551f12df54ep@chr1:46647115..46647118, -
5.45e-17FFCP PHASE1:Hg19::chr1:46647115..46647118,-#_195ac632dcd9764b649bf551f12df54ep@chr1:46647115..46647118, -
5.92e-17FFCP PHASE2:Hg19::chr17:39768786..39768828,-#_9fdc3e5b1fd8047750c578944a6b3bfcp2@KRT16
5.92e-17FFCP PHASE1:Hg19::chr17:39768786..39768828,-#_9fdc3e5b1fd8047750c578944a6b3bfcp2@KRT16