Personal tools

UBERON:0002240

From FANTOM5_SSTAR

Jump to: navigation, search

Name:spinal cord
Namespace:FANTOM
Definition:"Elongated, approximately cylindrical part of the central nervous system that lies in the vertebral canal and from which the spinal nerves emerge." [OMD:spinal+cord, Wikipedia:Spinal_cord]
Xrefs:
links:

AAO:0010151
BM:SpC
BTO:0001279
EFO:0000110
EHDAA2:0001255
EHDAA:2863
EMAPA:17577
EMAPA:17700
EV:0100316
FMA:7647
GAID:695
[1]
MA:0000216
MAT:0000183
MESH:A.08.186.854
MIAA:0000183
ncithesaurus:Spinal_Cord
NIF_GrossAnatomy:birnlex_1709
OpenCyc:Mx4rvVjjk5wpEbGdrcN5Y29ycA
SCTID:180959008
TAO:0000075
VHOG:0000601
XAO:0000020

ZFA:0000075
Synonyms: "medulla spinalis" RELATED [BTO:0001279]
"medulla spinalis" RELATED LATIN [Wikipedia:Spinal_cord]
"spinal cord structure" RELATED [ZFA:0000075]
"spinal medulla" RELATED [BTO:0001279]
Comments:TODO: add superclass to unify with VNC?
Alt_id: UBERON:FMA_7647-MA_0000216-MIAA_0000183-XAO_0000020-ZFA_0000075
Subset: major_organ
organ_slim
uberon_slim
vertebrate_core

Ontology association
Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.

link to ontology dataset
data


Parents

is_a:UBERON:0000489(cavitated compound organ),UBERON:0004121(ectoderm-derived structure),UBERON:0005174(dorsal region element),UBERON:0010314(structure with developmental contribution from neural crest)
develops_from:UBERON:0003076(posterior neural tube)
part_of:UBERON:0001017(central nervous system),UBERON:0001137(dorsum)



Children

is a:FF:10359-105E8 (spinal cord, newborn, donor10223)
derives from:FF:0010056 (human spinal cord - fetal sample),FF:0010159 (human spinal cord - adult sample),FF:0011305 (mouse spinal cord- adult sample)
part of:FF:0000198 (astrocyte of spinal cord),UBERON:0001948 (regional part of spinal cord),UBERON:0002315 (gray matter of spinal cord),CL:0002606 (astrocyte of the spinal cord),UBERON:0016550 (spinal cord column)

Ontology Tree: Loaded from BioPortal


FF samples
It includes FANTOM5 samples that overlay the Uberon ontology


Human (Homo sapiens)

... further results Mouse (Mus musculus)

... further results


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0002240 (spinal cord), sorted by p-values
Analyst: Hideya Kawaji

link to source dataset
human : data
mouse : data


P-valueFFCPShort description
8.98e-131FFCP PHASE2:Hg19::chr8:131864839..131864841,+#_fee0980fbd105249b61718654dd003e5p@chr8:131864839..131864841, +
8.98e-131FFCP PHASE1:Hg19::chr8:131864839..131864841,+#_fee0980fbd105249b61718654dd003e5p@chr8:131864839..131864841, +
3.04e-85FFCP PHASE2:Hg19::chr17:42993851..42993858,-#_2aed28010ad63de6ac48aa0001df549dp@chr17:42993851..42993858, -
3.04e-85FFCP PHASE1:Hg19::chr17:42993851..42993858,-#_2aed28010ad63de6ac48aa0001df549dp@chr17:42993851..42993858, -
4.06e-85FFCP PHASE1:Hg19::chr17:42993904..42993912,-#_efcb82e50f11e4fda3228569936a17a9p@chr17:42993904..42993912, -
4.06e-85FFCP PHASE2:Hg19::chr17:42993904..42993912,-#_efcb82e50f11e4fda3228569936a17a9p@chr17:42993904..42993912, -
4.03e-84FFCP PHASE2:Hg19::chr13:109248336..109248343,+#_99a964903b7746b7b69c851548f36f3fp7@MYO16
4.03e-84FFCP PHASE1:Hg19::chr13:109248336..109248343,+#_99a964903b7746b7b69c851548f36f3fp7@MYO16
4.55e-74FFCP PHASE2:Hg19::chr1:161274636..161274641,-#_03037c75549184efc19579a32fd362f1p@chr1:161274636..161274641, -
4.55e-74FFCP PHASE1:Hg19::chr1:161274636..161274641,-#_03037c75549184efc19579a32fd362f1p@chr1:161274636..161274641, -
2.48e-72FFCP PHASE1:Mm9::chr11:96608388..96608420,+#_258fb0a3c4115d016ff3071a1d4f0603p@chr11:96608388..96608420, +
2.48e-72FFCP PHASE2:Mm9::chr11:96608388..96608420,+#_258fb0a3c4115d016ff3071a1d4f0603p@chr11:96608388..96608420, +
2.48e-72FFCP PHASE1:Mm9::chr14:33413108..33413118,+#_258fb0a3c4115d016ff3071a1d4f0603p3@Prrxl1
2.48e-72FFCP PHASE2:Mm9::chr2:70053872..70053879,+#_258fb0a3c4115d016ff3071a1d4f0603p@chr2:70053872..70053879, +
2.48e-72FFCP PHASE2:Mm9::chr18:84268738..84268777,-#_258fb0a3c4115d016ff3071a1d4f0603p@chr18:84268738..84268777, -
2.48e-72FFCP PHASE1:Mm9::chr18:84268738..84268777,-#_258fb0a3c4115d016ff3071a1d4f0603p@chr18:84268738..84268777, -
2.48e-72FFCP PHASE1:Mm9::chr2:70053872..70053879,+#_258fb0a3c4115d016ff3071a1d4f0603p@chr2:70053872..70053879, +
2.48e-72FFCP PHASE2:Mm9::chr14:33413108..33413118,+#_258fb0a3c4115d016ff3071a1d4f0603p3@Prrxl1
9.82e-67FFCP PHASE2:Hg19::chr16:19800150..19800179,+#_c880192fd7768accdb6ca7fa4d24eb87p@chr16:19800150..19800179, +
9.82e-67FFCP PHASE2:Hg19::chrX:100489588..100489605,+#_c880192fd7768accdb6ca7fa4d24eb87p@chrX:100489588..100489605, +
9.82e-67FFCP PHASE1:Hg19::chr16:19800150..19800179,+#_c880192fd7768accdb6ca7fa4d24eb87p@chr16:19800150..19800179, +
9.82e-67FFCP PHASE1:Hg19::chrX:100489588..100489605,+#_c880192fd7768accdb6ca7fa4d24eb87p@chrX:100489588..100489605, +
1.54e-66FFCP PHASE1:Hg19::chr11:58390160..58390175,+#_343f38d6138209fa0b4120e31b57dc7ap2@CNTF
1.54e-66FFCP PHASE2:Hg19::chr11:58390160..58390175,+#_343f38d6138209fa0b4120e31b57dc7ap2@CNTF
1.71e-66FFCP PHASE2:Hg19::chr15:46702462..46702465,+#_78b46b7b6870ce15b254749bad0dc1ecp@chr15:46702462..46702465, +
1.71e-66FFCP PHASE2:Hg19::chr1:161275096..161275109,-#_78b46b7b6870ce15b254749bad0dc1ec-, p@chr1:161275096..161275109
1.71e-66FFCP PHASE1:Hg19::chr1:161275096..161275109,-#_78b46b7b6870ce15b254749bad0dc1ecp@chr1:161275096..161275109, -
1.71e-66FFCP PHASE1:Hg19::chr15:46702462..46702465,+#_78b46b7b6870ce15b254749bad0dc1ecp@chr15:46702462..46702465, +
2.4e-66FFCP PHASE2:Hg19::chr1:60460743..60460750,+#_6b3324de06f1b234c9c863aab3517a2dp@chr1:60460743..60460750, +
2.4e-66FFCP PHASE1:Hg19::chr1:60460743..60460750,+#_6b3324de06f1b234c9c863aab3517a2d+, p@chr1:60460743..60460750
2.4e-66FFCP PHASE1:Hg19::chr17:42984119..42984130,-#_6b3324de06f1b234c9c863aab3517a2dp43@GFAP
2.4e-66FFCP PHASE2:Hg19::chr17:42984119..42984130,-#_6b3324de06f1b234c9c863aab3517a2dp43@GFAP
3.35e-66FFCP PHASE2:Hg19::chr17:42983263..42983264,-#_38f070c55b31ed62d49420b8ac246832p@chr17:42983263..42983264, -
3.35e-66FFCP PHASE1:Hg19::chr17:42983263..42983264,-#_38f070c55b31ed62d49420b8ac246832p@chr17:42983263..42983264, -
1.35e-65FFCP PHASE2:Mm9::chr11:96132456..96132467,+#_975a2a6a6d82cf1fbb1287c666d1954ap4@Hoxb9
1.35e-65FFCP PHASE1:Mm9::chr11:96132456..96132467,+#_975a2a6a6d82cf1fbb1287c666d1954ap4@Hoxb9
1.71e-64FFCP PHASE2:Mm9::chr7:57165602..57165612,+#_c99df7a95440a70cef022499fe7e075dp6@Slc6a5
1.71e-64FFCP PHASE1:Mm9::chr7:57165602..57165612,+#_c99df7a95440a70cef022499fe7e075dp6@Slc6a5
2.34e-60FFCP PHASE1:Mm9::chr11:96143545..96143556,+#_ade1a99995b8894ff129615462b0cf0bp6@Hoxb8
2.34e-60FFCP PHASE2:Mm9::chr11:96143545..96143556,+#_ade1a99995b8894ff129615462b0cf0bp6@Hoxb8
9.99e-60FFCP PHASE1:Hg19::chr18:77014816..77014819,-#_3305807e2df5447d02f3dbfef8a4f94ep@chr18:77014816..77014819, -
9.99e-60FFCP PHASE2:Hg19::chr18:77014816..77014819,-#_3305807e2df5447d02f3dbfef8a4f94ep@chr18:77014816..77014819, -
4.07e-59FFCP PHASE2:Hg19::chr16:74808506..74808519,-#_4dce5c293c53249d04060b7bb67666fep4@FA2H
4.07e-59FFCP PHASE1:Hg19::chr16:74808506..74808519,-#_4dce5c293c53249d04060b7bb67666fep4@FA2H
6.9e-59FFCP PHASE2:Mm9::chr11:33103589..33103599,-#_fc10ec4e21d02e70f04363598e2374b8p3@Tlx3
6.9e-59FFCP PHASE1:Mm9::chr11:33103589..33103599,-#_fc10ec4e21d02e70f04363598e2374b8p3@Tlx3
1.09e-58FFCP PHASE1:Mm9::chr4:150371190..150371197,+#_f74f4429b884ae6349be6339595fd7b9p1@Uts2
1.09e-58FFCP PHASE2:Mm9::chr4:150371190..150371197,+#_f74f4429b884ae6349be6339595fd7b9p1@Uts2
1.36e-58FFCP PHASE2:Mm9::chr11:96146541..96146544,+#_7888da431a41af1f9f008767f8cc6bf5p@chr11:96146541..96146544, +
1.36e-58FFCP PHASE1:Mm9::chr11:96146541..96146544,+#_7888da431a41af1f9f008767f8cc6bf5p@chr11:96146541..96146544, +
3.91e-58FFCP PHASE2:Mm9::chr11:96148092..96148105,+#_dc6eca90cf960f0418b796dc4a612037p@chr11:96148092..96148105, +
3.91e-58FFCP PHASE1:Mm9::chr11:96148092..96148105,+#_dc6eca90cf960f0418b796dc4a612037p@chr11:96148092..96148105, +
3.91e-58FFCP PHASE1:Mm9::chr7:94732458..94732467,+#_dc6eca90cf960f0418b796dc4a612037p13@Grm5
3.91e-58FFCP PHASE2:Mm9::chr7:94732458..94732467,+#_dc6eca90cf960f0418b796dc4a612037p13@Grm5
2.88e-55FFCP PHASE2:Hg19::chr6:133424178..133424190,-#_5c46cfe3937370d2e6567dcc1d513bb3p@chr6:133424178..133424190, -
2.88e-55FFCP PHASE1:Hg19::chr6:133424178..133424190,-#_5c46cfe3937370d2e6567dcc1d513bb3p@chr6:133424178..133424190, -
4.17e-55FFCP PHASE1:Hg19::chr1:161275189..161275203,-#_e8939c2878b527b16ed489cf27e33b3ap@chr1:161275189..161275203, -
4.17e-55FFCP PHASE1:Hg19::chrX:100489564..100489583,+#_e8939c2878b527b16ed489cf27e33b3ap@chrX:100489564..100489583, +
4.17e-55FFCP PHASE2:Hg19::chr1:161275189..161275203,-#_e8939c2878b527b16ed489cf27e33b3ap@chr1:161275189..161275203, -
4.17e-55FFCP PHASE2:Hg19::chrX:100489564..100489583,+#_e8939c2878b527b16ed489cf27e33b3ap@chrX:100489564..100489583, +
7.24e-55FFCP PHASE2:Hg19::chr17:42983316..42983326,-#_928adb4f3f447dac1186cbef9ba547f9p@chr17:42983316..42983326, -
7.24e-55FFCP PHASE1:Hg19::chr17:42983316..42983326,-#_928adb4f3f447dac1186cbef9ba547f9p@chr17:42983316..42983326, -
1.81e-54FFCP PHASE2:Hg19::chr2:27073036..27073042,-#_5befbe9cfe92e32b8e53544bea9f79b9p@chr2:27073036..27073042, -
1.81e-54FFCP PHASE1:Hg19::chr2:27073036..27073042,-#_5befbe9cfe92e32b8e53544bea9f79b9p@chr2:27073036..27073042, -
1.81e-54FFCP PHASE2:Hg19::chr1:161275111..161275127,-#_5befbe9cfe92e32b8e53544bea9f79b9p@chr1:161275111..161275127, -
1.81e-54FFCP PHASE1:Hg19::chr1:161275111..161275127,-#_5befbe9cfe92e32b8e53544bea9f79b9p@chr1:161275111..161275127, -
2.19e-53FFCP PHASE2:Hg19::chr14:36367955..36367964,+#_0bbea964c3257fb2785f33416d5f997bp@chr14:36367955..36367964, +
2.19e-53FFCP PHASE1:Hg19::chr14:36367955..36367964,+#_0bbea964c3257fb2785f33416d5f997bp@chr14:36367955..36367964, +
2.97e-53FFCP PHASE2:Mm9::chr5:24032551..24032557,-#_801a2e9f3520fe98891f932fb26a9189p1@Gbx1
2.97e-53FFCP PHASE1:Mm9::chr5:24032551..24032557,-#_801a2e9f3520fe98891f932fb26a9189p1@Gbx1
3.75e-53FFCP PHASE1:Hg19::chr11:114146042..114146050,-#_3c9891b01380d7035e0b2102d5dad6c8p@chr11:114146042..114146050, -
3.75e-53FFCP PHASE2:Hg19::chr11:114146042..114146050,-#_3c9891b01380d7035e0b2102d5dad6c8p@chr11:114146042..114146050, -
4.89e-53FFCP PHASE2:Hg19::chr16:7137754..7137799,+#_653991d48ac73311dfd88ef30fbdce1ep@chr16:7137754..7137799, +
4.89e-53FFCP PHASE1:Hg19::chr16:7137754..7137799,+#_653991d48ac73311dfd88ef30fbdce1ep@chr16:7137754..7137799, +
4.89e-53FFCP PHASE1:Hg19::chr1:167905363..167905364,-#_653991d48ac73311dfd88ef30fbdce1ep12@BRP44
4.89e-53FFCP PHASE2:Hg19::chr1:167905363..167905364,-#_653991d48ac73311dfd88ef30fbdce1ep12@BRP44
6.39e-53FFCP PHASE2:Hg19::chr6:151054827..151054836,+#_8d502061023059c9fc0733defc3012cbp23@PLEKHG1
6.39e-53FFCP PHASE1:Hg19::chr6:151054827..151054836,+#_8d502061023059c9fc0733defc3012cbp23@PLEKHG1
6.39e-53FFCP PHASE1:Hg19::chr11:119999153..119999163,-#_8d502061023059c9fc0733defc3012cbp24@TRIM29
6.39e-53FFCP PHASE2:Hg19::chr11:119999153..119999163,-#_8d502061023059c9fc0733defc3012cbp24@TRIM29
1.99e-52FFCP PHASE1:Mm9::chr11:96160098..96160112,+#_7998c739fe4522ca28050ac4ea1adfe9p8@Hoxb6
1.99e-52FFCP PHASE1:Mm9::chr2:74530108..74530131,+#_7998c739fe4522ca28050ac4ea1adfe9p@chr2:74530108..74530131, +
1.99e-52FFCP PHASE2:Mm9::chr11:96160098..96160112,+#_7998c739fe4522ca28050ac4ea1adfe9p8@Hoxb6
1.99e-52FFCP PHASE2:Mm9::chr2:74530108..74530131,+#_7998c739fe4522ca28050ac4ea1adfe9+, p@chr2:74530108..74530131
2.3e-52FFCP PHASE1:Mm9::chr7:57165453..57165473,+#_395b66210d31a638575d4c319a01d95ap3@Slc6a5
2.3e-52FFCP PHASE2:Mm9::chr7:57165453..57165473,+#_395b66210d31a638575d4c319a01d95ap3@Slc6a5
4.11e-52FFCP PHASE1:Mm9::chr2:74529917..74529926,+#_73d7bb4ed97092da66f38eb36a671899p5@Hoxd10
4.11e-52FFCP PHASE2:Mm9::chr2:74529917..74529926,+#_73d7bb4ed97092da66f38eb36a671899p5@Hoxd10
8.11e-51FFCP PHASE2:Hg19::chr17:42989173..42989181,-#_51564c4c13bd8ea04095547d44ad74cbp40@GFAP
8.11e-51FFCP PHASE1:Hg19::chr17:42989173..42989181,-#_51564c4c13bd8ea04095547d44ad74cbp40@GFAP
1.89e-50FFCP PHASE2:Hg19::chr17:42983296..42983307,-#_c5ec8b4397a79d4aa007406b8a8a254ap@chr17:42983296..42983307, -
1.89e-50FFCP PHASE1:Hg19::chr17:42983296..42983307,-#_c5ec8b4397a79d4aa007406b8a8a254ap@chr17:42983296..42983307, -
2.23e-50FFCP PHASE2:Hg19::chrX:106692569..106692585,+#_2aef7ed5593a558fdf072a918be99bc3p@chrX:106692569..106692585, +
2.23e-50FFCP PHASE1:Hg19::chrX:106692569..106692585,+#_2aef7ed5593a558fdf072a918be99bc3+, p@chrX:106692569..106692585
2.23e-50FFCP PHASE2:Hg19::chrX:103046616..103046621,+#_2aef7ed5593a558fdf072a918be99bc3p@chrX:103046616..103046621, +
2.23e-50FFCP PHASE1:Hg19::chrX:103046616..103046621,+#_2aef7ed5593a558fdf072a918be99bc3+, p@chrX:103046616..103046621
1.47e-48FFCP PHASE2:Mm9::chr15:102355046..102355050,-#_c703993c570c40942473b8340ce8b977p1@Npff
1.47e-48FFCP PHASE1:Mm9::chr15:102355046..102355050,-#_c703993c570c40942473b8340ce8b977p1@Npff
2.57e-48FFCP PHASE2:Mm9::chr2:135883447..135883459,+#_d478f467c81168abbf8820c9d97f27c5p12@6330527O06Rik
2.57e-48FFCP PHASE1:Mm9::chr2:135883447..135883459,+#_d478f467c81168abbf8820c9d97f27c5p12@6330527O06Rik










Property "Property value" (as page type) with input value "UBPROP:0000001 "Part of the central nervous system which descends from the hindbrain within the vertebral column.[AAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.