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UBERON:0002257

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Name:ventral horn of spinal cord
Namespace:FANTOM
Definition:"the ventral grey column of the spinal cord[MP]. The neurons of the ventral region of the mature spinal cord participate in motor output[GO]." [GO:0021517, MP:0005112]
Xrefs:
links:

EMAPA:18575
FMA:256541
MA:0001134
ncithesaurus:Ventral_Horn_of_the_Spinal_Cord
NIF_GrossAnatomy:birnlex_2668
SCTID:279443000
TAO:0000702
VHOG:0001288

ZFA:0000702
Synonyms: "anterior gray column of spinal cord" EXACT [FMA:256541]
"anterior gray horn of spinal cord" EXACT [FMA:256541]
"anterior grey column of spinal cord" EXACT []
"anterior horn" EXACT [NIF_GrossAnatomy:birnlex_2668]
"spinal cord anterior horn" EXACT [NIF_GrossAnatomy:birnlex_2668]
"spinal cord ventral horn" EXACT []
"ventral gray column of spinal cord" EXACT [FMA:256541]
"ventral gray matter of spinal cord" EXACT [FMA:256541]
"ventral grey column of spinal cord" EXACT []
"ventral grey horn" EXACT [NIF_GrossAnatomy:birnlex_2668]
"ventral horn spinal cord" EXACT [ZFA:0000702]
"ventral region of spinal cord" EXACT []
"ventral spinal cord" EXACT []
Comments:This class was created automatically from a combination of ontologies
Alt_id: UBERON:FMA_77431-MA_0001134
Subset: vertebrate_core

Ontology association
Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.

link to ontology dataset
data


Parents

is_a:UBERON:0015212(lateral structure),UBERON:0016550(spinal cord column)
part_of:UBERON:0002315(gray matter of spinal cord)



Children

part of:CL:0002612 (neuron of the ventral spinal cord)

Ontology Tree: Loaded from BioPortal


FF samples
It includes FANTOM5 samples that overlay the Uberon ontology


Mouse (Mus musculus)

  • 11648-122E1 (Mouse Neurons - ventral spinal cord, donor3)
  • 11725-123D6 (Mouse Neurons - ventral spinal cord, donor1)
  • 11743-123F6 (Mouse Neurons - ventral spinal cord, donor2)


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0002257 (ventral horn of spinal cord), sorted by p-values
Analyst: Hideya Kawaji

link to source dataset
human : data
mouse : data


P-valueFFCPShort description
1.33e-65FFCP PHASE2:Mm9::chr11:96148092..96148105,+#_2a573739aea57452f5d021ebb1899d54p@chr11:96148092..96148105, +
1.33e-65FFCP PHASE1:Mm9::chr11:96148092..96148105,+#_2a573739aea57452f5d021ebb1899d54p@chr11:96148092..96148105, +
2.21e-65FFCP PHASE1:Mm9::chr7:94732458..94732467,+#_dd8ef7587f20725d2ee5725210d6956ep13@Grm5
2.21e-65FFCP PHASE2:Mm9::chr7:94732458..94732467,+#_dd8ef7587f20725d2ee5725210d6956ep13@Grm5
3.28e-58FFCP PHASE2:Mm9::chr5:23665663..23665666,+#_63c32c5b57ee44de986efe1a1aa0df5ap@chr5:23665663..23665666, +
3.28e-58FFCP PHASE1:Mm9::chr5:23665663..23665666,+#_63c32c5b57ee44de986efe1a1aa0df5ap@chr5:23665663..23665666, +
4.9e-53FFCP PHASE1:Mm9::chr5:77527885..77527900,+#_8dea0509d24c490659d1c5b57b6383a9p@chr5:77527885..77527900, +
4.9e-53FFCP PHASE2:Mm9::chr5:77527885..77527900,+#_8dea0509d24c490659d1c5b57b6383a9p@chr5:77527885..77527900, +
7.35e-53FFCP PHASE1:Mm9::chr12:47797986..47798011,-#_ccdd79178b5a949c734b7b2f9db1011dp@chr12:47797986..47798011, -
7.35e-53FFCP PHASE2:Mm9::chr12:47797986..47798011,-#_ccdd79178b5a949c734b7b2f9db1011dp@chr12:47797986..47798011, -
1.1e-52FFCP PHASE2:Mm9::chr14:33413108..33413118,+#_f9ddc57ad1debac66326e314df245f60p3@Prrxl1
1.1e-52FFCP PHASE2:Mm9::chr18:84268738..84268777,-#_f9ddc57ad1debac66326e314df245f60p@chr18:84268738..84268777, -
1.1e-52FFCP PHASE1:Mm9::chr18:84268738..84268777,-#_f9ddc57ad1debac66326e314df245f60p@chr18:84268738..84268777, -
1.1e-52FFCP PHASE1:Mm9::chr14:33413108..33413118,+#_f9ddc57ad1debac66326e314df245f60p3@Prrxl1
1.65e-52FFCP PHASE2:Mm9::chr11:96608388..96608420,+#_84d9f8bcc370fc544e917a9b4262b95bp@chr11:96608388..96608420, +
1.65e-52FFCP PHASE1:Mm9::chr10:101630272..101630276,+#_84d9f8bcc370fc544e917a9b4262b95bp@chr10:101630272..101630276, +
1.65e-52FFCP PHASE2:Mm9::chr10:101630272..101630276,+#_84d9f8bcc370fc544e917a9b4262b95bp@chr10:101630272..101630276, +
1.65e-52FFCP PHASE1:Mm9::chr11:96608388..96608420,+#_84d9f8bcc370fc544e917a9b4262b95bp@chr11:96608388..96608420, +
1.66e-44FFCP PHASE2:Mm9::chr11:96143545..96143556,+#_d4bf763022eb9bbc41feebad7a1134c1p6@Hoxb8
1.66e-44FFCP PHASE1:Mm9::chr11:96143545..96143556,+#_d4bf763022eb9bbc41feebad7a1134c1p6@Hoxb8
1.17e-38FFCP PHASE1:Mm9::chr2:74530108..74530131,+#_ed42574ec2744af697484aaf4af65084p@chr2:74530108..74530131, +
1.17e-38FFCP PHASE2:Mm9::chr2:74530108..74530131,+#_ed42574ec2744af697484aaf4af65084+, p@chr2:74530108..74530131
2.09e-38FFCP PHASE2:Mm9::chr11:96160098..96160112,+#_7582374ba99e2805528635847fccd655p8@Hoxb6
2.09e-38FFCP PHASE1:Mm9::chr11:96160098..96160112,+#_7582374ba99e2805528635847fccd655p8@Hoxb6
3.73e-38FFCP PHASE2:Mm9::chr11:96132544..96132553,+#_bd2aa38569741fd6c092de4eecffc1d2p6@Hoxb9
3.73e-38FFCP PHASE1:Mm9::chr11:96132544..96132553,+#_bd2aa38569741fd6c092de4eecffc1d2p6@Hoxb9
3.73e-38FFCP PHASE1:Mm9::chr2:74529917..74529926,+#_bd2aa38569741fd6c092de4eecffc1d2p5@Hoxd10
3.73e-38FFCP PHASE2:Mm9::chr2:74529917..74529926,+#_bd2aa38569741fd6c092de4eecffc1d2p5@Hoxd10
2.8e-37FFCP PHASE2:Mm9::chr7:6659121..6659133,-#_478a23b7b908ce4f81e0b7a7aab8e123p@chr7:6659121..6659133, -
2.8e-37FFCP PHASE1:Mm9::chr7:6659121..6659133,-#_478a23b7b908ce4f81e0b7a7aab8e123p@chr7:6659121..6659133, -
3.67e-34FFCP PHASE2:Mm9::chr11:96132456..96132467,+#_d69333226542cfda4278ef6e4163dccfp4@Hoxb9
3.67e-34FFCP PHASE1:Mm9::chr11:96132456..96132467,+#_d69333226542cfda4278ef6e4163dccfp4@Hoxb9
7.89e-34FFCP PHASE1:Mm9::chr12:110843236..110843239,+#_7d0b9775b6560ebad8be75f01211ec57p@chr12:110843236..110843239, +
7.89e-34FFCP PHASE2:Mm9::chr12:110843236..110843239,+#_7d0b9775b6560ebad8be75f01211ec57p@chr12:110843236..110843239, +
5.97e-33FFCP PHASE1:Mm9::chr7:57165602..57165612,+#_0aef32a42817858a5255dbd55fdb2af9p6@Slc6a5
5.97e-33FFCP PHASE2:Mm9::chr7:57165602..57165612,+#_0aef32a42817858a5255dbd55fdb2af9p6@Slc6a5
1.16e-30FFCP PHASE1:Mm9::chr11:33103589..33103599,-#_b2256bb404330c9480f06a2efdb9623cp3@Tlx3
1.16e-30FFCP PHASE2:Mm9::chr11:33103589..33103599,-#_b2256bb404330c9480f06a2efdb9623cp3@Tlx3
1.83e-30FFCP PHASE2:Mm9::chr11:96146541..96146544,+#_36e0c32d14319cf0da6278611bbfd8b7p@chr11:96146541..96146544, +
1.83e-30FFCP PHASE1:Mm9::chr11:96146541..96146544,+#_36e0c32d14319cf0da6278611bbfd8b7p@chr11:96146541..96146544, +
4.03e-30FFCP PHASE2:Mm9::chr8:33760116..33760119,-#_a12e08684531ac30d8d9eb7d182d67cdp@chr8:33760116..33760119, -
4.03e-30FFCP PHASE1:Mm9::chr8:33760116..33760119,-#_a12e08684531ac30d8d9eb7d182d67cdp@chr8:33760116..33760119, -
5.64e-30FFCP PHASE1:Mm9::chr12:47886256..47886259,-#_45c466ea2f2c6ce9614c78850b598228-, p@chr12:47886256..47886259
5.64e-30FFCP PHASE2:Mm9::chr12:47886256..47886259,-#_45c466ea2f2c6ce9614c78850b598228-, p@chr12:47886256..47886259
5.64e-30FFCP PHASE1:Mm9::chr5:89666281..89666294,+#_45c466ea2f2c6ce9614c78850b598228p@chr5:89666281..89666294, +
5.64e-30FFCP PHASE2:Mm9::chr5:89666281..89666294,+#_45c466ea2f2c6ce9614c78850b598228p@chr5:89666281..89666294, +
5.7e-30FFCP PHASE1:Mm9::chr11:104171794..104171805,+#_5d104da7caa6ab931308ef8d7c15a34cp@chr11:104171794..104171805, +
5.7e-30FFCP PHASE2:Mm9::chr11:104171794..104171805,+#_5d104da7caa6ab931308ef8d7c15a34cp@chr11:104171794..104171805, +
7.89e-30FFCP PHASE1:Mm9::chr4:58340140..58340151,+#_ff96f12e064968968931a104c3c2a14ep@chr4:58340140..58340151, +
7.89e-30FFCP PHASE2:Mm9::chr4:58340140..58340151,+#_ff96f12e064968968931a104c3c2a14ep@chr4:58340140..58340151, +
1.4e-29FFCP PHASE2:Mm9::chr14:94197171..94197177,-#_4e43663075274bab4bf7c905bc721286p@chr14:94197171..94197177, -
1.4e-29FFCP PHASE1:Mm9::chr14:94197171..94197177,-#_4e43663075274bab4bf7c905bc721286p@chr14:94197171..94197177, -
1.4e-29FFCP PHASE1:Mm9::chr4:150371190..150371197,+#_4e43663075274bab4bf7c905bc721286p1@Uts2
1.4e-29FFCP PHASE2:Mm9::chr4:150371190..150371197,+#_4e43663075274bab4bf7c905bc721286p1@Uts2
1.54e-29FFCP PHASE2:Mm9::chr8:84578004..84578010,+#_e7ff1db32b68874b1118a1f3d0b10016p@chr8:84578004..84578010, +
1.54e-29FFCP PHASE1:Mm9::chr8:84578004..84578010,+#_e7ff1db32b68874b1118a1f3d0b10016p@chr8:84578004..84578010, +
1.11e-27FFCP PHASE1:Mm9::chr2:70399563..70399583,+#_3505e865c1f6e7118afb61a0f89bc0afp@chr2:70399563..70399583, +
1.11e-27FFCP PHASE2:Mm9::chr5:24032551..24032557,-#_3505e865c1f6e7118afb61a0f89bc0afp1@Gbx1
1.11e-27FFCP PHASE2:Mm9::chr2:70399563..70399583,+#_3505e865c1f6e7118afb61a0f89bc0afp@chr2:70399563..70399583, +
1.11e-27FFCP PHASE1:Mm9::chr5:24032551..24032557,-#_3505e865c1f6e7118afb61a0f89bc0afp1@Gbx1
2.06e-27FFCP PHASE2:Mm9::chrX:98516253..98516269,+#_3352ffea12b3920d4907480a7ebf8941p@chrX:98516253..98516269, +
2.06e-27FFCP PHASE1:Mm9::chrX:98516253..98516269,+#_3352ffea12b3920d4907480a7ebf8941p@chrX:98516253..98516269, +
3.1e-27FFCP PHASE1:Mm9::chr13:97841582..97841592,+#_8e590551bd2f0e35f0ad0a3dc72d43ccp5@Fam169a
3.1e-27FFCP PHASE2:Mm9::chr7:144388046..144388053,-#_8e590551bd2f0e35f0ad0a3dc72d43ccp@chr7:144388046..144388053, -
3.1e-27FFCP PHASE2:Mm9::chr13:97841582..97841592,+#_8e590551bd2f0e35f0ad0a3dc72d43ccp5@Fam169a
3.1e-27FFCP PHASE1:Mm9::chr7:144388046..144388053,-#_8e590551bd2f0e35f0ad0a3dc72d43ccp@chr7:144388046..144388053, -
4.66e-27FFCP PHASE1:Mm9::chr10:59862497..59862520,+#_5d564c298faab2ea4339387b4c0e67a0p2@Gm17455
4.66e-27FFCP PHASE2:Mm9::chr10:59862497..59862520,+#_5d564c298faab2ea4339387b4c0e67a0p2@Gm17455
6.99e-27FFCP PHASE1:Mm9::chr2:180625404..180625417,+#_742ee434af984cff9e266779e6b4686dp@chr2:180625404..180625417, +
6.99e-27FFCP PHASE2:Mm9::chr2:180625404..180625417,+#_742ee434af984cff9e266779e6b4686dp@chr2:180625404..180625417, +
8.55e-27FFCP PHASE1:Mm9::chr7:57165453..57165473,+#_e540e4e96eb2d329660c8dfe4c4e8c0bp3@Slc6a5
8.55e-27FFCP PHASE2:Mm9::chr7:57165453..57165473,+#_e540e4e96eb2d329660c8dfe4c4e8c0bp3@Slc6a5
2.12e-25FFCP PHASE2:Mm9::chr2:135885511..135885540,+#_5a8ddf7589028aee7d0805d9eee97305p@chr2:135885511..135885540, +
2.12e-25FFCP PHASE1:Mm9::chr2:135885511..135885540,+#_5a8ddf7589028aee7d0805d9eee97305p@chr2:135885511..135885540, +
2.56e-25FFCP PHASE2:Mm9::chr13:97419784..97419792,-#_4fe4b75bfcaba7c7ad2178be385cdd47p@chr13:97419784..97419792, -
2.56e-25FFCP PHASE2:Mm9::chr2:135883447..135883459,+#_4fe4b75bfcaba7c7ad2178be385cdd47p12@6330527O06Rik
2.56e-25FFCP PHASE1:Mm9::chr13:97419784..97419792,-#_4fe4b75bfcaba7c7ad2178be385cdd47p@chr13:97419784..97419792, -
2.56e-25FFCP PHASE1:Mm9::chr2:135883447..135883459,+#_4fe4b75bfcaba7c7ad2178be385cdd47p12@6330527O06Rik
9.4e-25FFCP PHASE2:Mm9::chr7:57165576..57165593,+#_9885b2e2770170030b425ff2d1307a8bp5@Slc6a5
9.4e-25FFCP PHASE2:Mm9::chr15:102355046..102355050,-#_9885b2e2770170030b425ff2d1307a8bp1@Npff
9.4e-25FFCP PHASE1:Mm9::chr15:102355046..102355050,-#_9885b2e2770170030b425ff2d1307a8bp1@Npff
9.4e-25FFCP PHASE1:Mm9::chr7:57165576..57165593,+#_9885b2e2770170030b425ff2d1307a8bp5@Slc6a5
1.13e-24FFCP PHASE1:Mm9::chr5:65522238..65522249,+#_450d49705e29db275c165566b6d749afp9@Klhl5
1.13e-24FFCP PHASE2:Mm9::chr5:65522238..65522249,+#_450d49705e29db275c165566b6d749afp9@Klhl5
1.74e-24FFCP PHASE2:Mm9::chr7:64495660..64495664,-#_c48ae30d7a639f04723e61f336febe38p@chr7:64495660..64495664, -
1.74e-24FFCP PHASE1:Mm9::chr7:64495660..64495664,-#_c48ae30d7a639f04723e61f336febe38p@chr7:64495660..64495664, -
2.28e-24FFCP PHASE1:Mm9::chr2:70053872..70053879,+#_b9e4f79edc1c8792d3ffbca307d5fc49p@chr2:70053872..70053879, +
2.28e-24FFCP PHASE2:Mm9::chr2:70053872..70053879,+#_b9e4f79edc1c8792d3ffbca307d5fc49p@chr2:70053872..70053879, +
2.36e-24FFCP PHASE2:Mm9::chr7:57165629..57165651,+#_954b75df0018c4274234d0099bd2a7bap4@Slc6a5
2.36e-24FFCP PHASE1:Mm9::chr7:57165629..57165651,+#_954b75df0018c4274234d0099bd2a7bap4@Slc6a5
2.99e-24FFCP PHASE2:Mm9::chr7:67121440..67121451,-#_ec29addebf403e503928b4360ade5e40p@chr7:67121440..67121451, -
2.99e-24FFCP PHASE1:Mm9::chr1:66486342..66486351,+#_ec29addebf403e503928b4360ade5e40p@chr1:66486342..66486351, +
2.99e-24FFCP PHASE2:Mm9::chr1:66486342..66486351,+#_ec29addebf403e503928b4360ade5e40p@chr1:66486342..66486351, +
2.99e-24FFCP PHASE1:Mm9::chr7:67121440..67121451,-#_ec29addebf403e503928b4360ade5e40p@chr7:67121440..67121451, -
2.99e-24FFCP PHASE2:Mm9::chr11:33103551..33103561,-#_ec29addebf403e503928b4360ade5e40p4@Tlx3
2.99e-24FFCP PHASE1:Mm9::chr11:33103551..33103561,-#_ec29addebf403e503928b4360ade5e40p4@Tlx3
3.91e-24FFCP PHASE2:Mm9::chr12:85023868..85023879,+#_0a706b3dcca9fca10e36c355b0b207a2p@chr12:85023868..85023879, +
3.91e-24FFCP PHASE1:Mm9::chr12:85023868..85023879,+#_0a706b3dcca9fca10e36c355b0b207a2p@chr12:85023868..85023879, +
4.08e-24FFCP PHASE2:Mm9::chr11:83696202..83696230,+#_1b22b027cec83f043c847ef16250e341p@chr11:83696202..83696230, +
4.08e-24FFCP PHASE1:Mm9::chr11:83696202..83696230,+#_1b22b027cec83f043c847ef16250e341p@chr11:83696202..83696230, +