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UBERON:0002275

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Name:reticular formation
Namespace:FANTOM
Xrefs:
links:

FMA:77719
[ 200px-Gray701.png 200px-Gray701.png]
MESH:A.08.186.211.132.772

SCTID:361552007
Comments:note that this class denotes the generic structure, and not a specific one such as medullary or pontine reticular formation.
Alt_id: UBERON:FMA_77719-ZFA_0000421
Subset: uberon_slim

Ontology association
Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.

link to ontology dataset
data


Parents

is_a:UBERON:0000477(anatomical cluster),UBERON:0002616(regional part of brain)
part_of:UBERON:0002298(brainstem)



Children

is a:UBERON:0015827 (brainstem reticular formation)
part of:UBERON:0004684 (raphe nuclei)

Ontology Tree: Loaded from BioPortal


FF samples
It includes FANTOM5 samples that overlay the Uberon ontology


Mouse (Mus musculus)


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0002275 (reticular formation), sorted by p-values
Analyst: Hideya Kawaji

link to source dataset
human : data
mouse : data


P-valueFFCPShort description
1.58e-86FFCP PHASE1:Mm9::chr9:67832482..67832485,+#_b0ee762022f5dd95c828c9805ed79affp@chr9:67832482..67832485, +
1.58e-86FFCP PHASE2:Mm9::chr9:67832482..67832485,+#_b0ee762022f5dd95c828c9805ed79affp@chr9:67832482..67832485, +
2.21e-65FFCP PHASE2:Mm9::chr11:6372235..6372242,-#_68289ca1ab3a369c25d2ad41beef35b1p1@ENSMUST00000175144
2.21e-65FFCP PHASE1:Mm9::chr11:6372235..6372242,-#_68289ca1ab3a369c25d2ad41beef35b1p1@ENSMUST00000175144
3.65e-65FFCP PHASE2:Mm9::chr6:77194015..77194026,+#_e53db4426d940beff15411c4d9aa1eb6p@chr6:77194015..77194026, +
3.65e-65FFCP PHASE1:Mm9::chr6:77194015..77194026,+#_e53db4426d940beff15411c4d9aa1eb6p@chr6:77194015..77194026, +
3.28e-58FFCP PHASE2:Mm9::chr2:24918331..24918345,+#_2cfb342a91ac558be4c370496fe95632p@chr2:24918331..24918345, +
3.28e-58FFCP PHASE1:Mm9::chr2:24918331..24918345,+#_2cfb342a91ac558be4c370496fe95632p@chr2:24918331..24918345, +
4.9e-53FFCP PHASE1:Mm9::chr3:88548978..88548990,-#_3e38ee049baf8a549ff34e7bc0d347d9p@chr3:88548978..88548990, -
4.9e-53FFCP PHASE2:Mm9::chr3:88548978..88548990,-#_3e38ee049baf8a549ff34e7bc0d347d9p@chr3:88548978..88548990, -
7.35e-53FFCP PHASE1:Mm9::chr10:10408741..10408754,-#_12a3effe9d877b8618c57f17895f7f2bp@chr10:10408741..10408754, -
7.35e-53FFCP PHASE2:Mm9::chr10:10408741..10408754,-#_12a3effe9d877b8618c57f17895f7f2bp@chr10:10408741..10408754, -
1.1e-52FFCP PHASE2:Mm9::chr3:126639582..126639596,-#_76748ae133ddc61c82060f9c3967f180p@chr3:126639582..126639596, -
1.1e-52FFCP PHASE1:Mm9::chr3:126639582..126639596,-#_76748ae133ddc61c82060f9c3967f180p@chr3:126639582..126639596, -
1.65e-52FFCP PHASE1:Mm9::chr4:57254065..57254072,-#_7f6658045d0399269096381ca52902d5p@chr4:57254065..57254072, -
1.65e-52FFCP PHASE2:Mm9::chr12:85023868..85023879,+#_7f6658045d0399269096381ca52902d5p@chr12:85023868..85023879, +
1.65e-52FFCP PHASE2:Mm9::chr4:57254065..57254072,-#_7f6658045d0399269096381ca52902d5p@chr4:57254065..57254072, -
1.65e-52FFCP PHASE1:Mm9::chr12:85023868..85023879,+#_7f6658045d0399269096381ca52902d5p@chr12:85023868..85023879, +
2.47e-52FFCP PHASE1:Mm9::chr10:6473752..6473760,-#_273edf2ddc3ef0ea67da3e0730e23395-, p@chr10:6473752..6473760
2.47e-52FFCP PHASE2:Mm9::chr1:66486342..66486351,+#_273edf2ddc3ef0ea67da3e0730e23395p@chr1:66486342..66486351, +
2.47e-52FFCP PHASE2:Mm9::chr10:6473752..6473760,-#_273edf2ddc3ef0ea67da3e0730e23395p@chr10:6473752..6473760, -
2.47e-52FFCP PHASE1:Mm9::chr1:66486342..66486351,+#_273edf2ddc3ef0ea67da3e0730e23395p@chr1:66486342..66486351, +
2.47e-52FFCP PHASE2:Mm9::chr7:67121440..67121451,-#_273edf2ddc3ef0ea67da3e0730e23395p@chr7:67121440..67121451, -
2.47e-52FFCP PHASE1:Mm9::chr7:67121440..67121451,-#_273edf2ddc3ef0ea67da3e0730e23395p@chr7:67121440..67121451, -
3.69e-52FFCP PHASE2:Mm9::chr4:57253865..57253876,-#_0779f3de18fd9e2e543738976532f1d7p@chr4:57253865..57253876, -
3.69e-52FFCP PHASE1:Mm9::chr4:57253865..57253876,-#_0779f3de18fd9e2e543738976532f1d7p@chr4:57253865..57253876, -
3.69e-52FFCP PHASE2:Mm9::chr4:57253877..57253880,-#_0779f3de18fd9e2e543738976532f1d7p@chr4:57253877..57253880, -
3.69e-52FFCP PHASE1:Mm9::chr4:57253877..57253880,-#_0779f3de18fd9e2e543738976532f1d7p@chr4:57253877..57253880, -
5.51e-52FFCP PHASE1:Mm9::chr14:66893581..66893589,-#_367f20178697a87548317233dc8250e2p@chr14:66893581..66893589, -
5.51e-52FFCP PHASE2:Mm9::chr14:66893581..66893589,-#_367f20178697a87548317233dc8250e2p@chr14:66893581..66893589, -
1.18e-44FFCP PHASE2:Mm9::chr4:134073503..134073512,-#_bfe4b9966bbbd9cbb7114829fcfa9f01p@chr4:134073503..134073512, -
1.18e-44FFCP PHASE2:Mm9::chr1:66743268..66743289,+#_bfe4b9966bbbd9cbb7114829fcfa9f01p@chr1:66743268..66743289, +
1.18e-44FFCP PHASE1:Mm9::chr1:66743268..66743289,+#_bfe4b9966bbbd9cbb7114829fcfa9f01p@chr1:66743268..66743289, +
1.18e-44FFCP PHASE1:Mm9::chr4:134073503..134073512,-#_bfe4b9966bbbd9cbb7114829fcfa9f01p@chr4:134073503..134073512, -
2.33e-44FFCP PHASE2:Mm9::chr8:67087900..67087910,-#_705977668225e8f8eac0fcc028a07af1p@chr8:67087900..67087910, -
2.33e-44FFCP PHASE1:Mm9::chr4:57447275..57447280,+#_705977668225e8f8eac0fcc028a07af1p21@Palm2
2.33e-44FFCP PHASE2:Mm9::chr4:57447275..57447280,+#_705977668225e8f8eac0fcc028a07af1p21@Palm2
2.33e-44FFCP PHASE1:Mm9::chr8:67087900..67087910,-#_705977668225e8f8eac0fcc028a07af1p@chr8:67087900..67087910, -
3.27e-44FFCP PHASE1:Mm9::chr10:111706834..111706844,+#_8de15a93cfdfb4521eca0a08c5d2cbfep@chr10:111706834..111706844, +
3.27e-44FFCP PHASE2:Mm9::chr9:46721556..46721563,+#_8de15a93cfdfb4521eca0a08c5d2cbfep5@2900052N01Rik
3.27e-44FFCP PHASE2:Mm9::chr10:111706834..111706844,+#_8de15a93cfdfb4521eca0a08c5d2cbfep@chr10:111706834..111706844, +
3.27e-44FFCP PHASE1:Mm9::chr9:46721556..46721563,+#_8de15a93cfdfb4521eca0a08c5d2cbfep5@2900052N01Rik
4.58e-44FFCP PHASE2:Mm9::chr10:6473722..6473734,-#_7b19fee5332c6d2e9780c08de1c60c92p@chr10:6473722..6473734, -
4.58e-44FFCP PHASE1:Mm9::chr10:6473722..6473734,-#_7b19fee5332c6d2e9780c08de1c60c92p@chr10:6473722..6473734, -
8.97e-44FFCP PHASE2:Mm9::chr9:14438679..14438684,-#_c9f43f324cabb589a0a5e20ace387b94p@chr9:14438679..14438684, -
8.97e-44FFCP PHASE1:Mm9::chr9:14438679..14438684,-#_c9f43f324cabb589a0a5e20ace387b94p@chr9:14438679..14438684, -
1.75e-43FFCP PHASE1:Mm9::chr4:147732971..147732980,-#_194dedad045bcd9e299ae2f034e037b2p@chr4:147732971..147732980, -
1.75e-43FFCP PHASE2:Mm9::chr4:147732971..147732980,-#_194dedad045bcd9e299ae2f034e037b2p@chr4:147732971..147732980, -
2.45e-43FFCP PHASE2:Mm9::chr16:43072307..43072322,+#_4f32aed57fe48baa44961a1c9dbf981ap@chr16:43072307..43072322, +
2.45e-43FFCP PHASE1:Mm9::chr16:43072307..43072322,+#_4f32aed57fe48baa44961a1c9dbf981ap@chr16:43072307..43072322, +
1.7e-39FFCP PHASE1:Mm9::chr10:6482651..6482660,-#_33229468c2caedace4048e05fc674203p@chr10:6482651..6482660, -
1.7e-39FFCP PHASE2:Mm9::chr10:6482651..6482660,-#_33229468c2caedace4048e05fc674203p@chr10:6482651..6482660, -
2.66e-39FFCP PHASE1:Mm9::chr2:103659822..103659827,-#_10acdac7b68d68a6c8ee5b363c99555cp1@ENSMUST00000118421, p1@ENSMUST00000167989
2.66e-39FFCP PHASE2:Mm9::chr14:13448641..13448660,-#_10acdac7b68d68a6c8ee5b363c99555cp@chr14:13448641..13448660, -
2.66e-39FFCP PHASE1:Mm9::chr14:13448641..13448660,-#_10acdac7b68d68a6c8ee5b363c99555cp@chr14:13448641..13448660, -
2.66e-39FFCP PHASE2:Mm9::chr2:103659822..103659827,-#_10acdac7b68d68a6c8ee5b363c99555cp1@ENSMUST00000118421, p1@ENSMUST00000167989
2.66e-39FFCP PHASE2:Mm9::chr12:110796949..110796955,+#_10acdac7b68d68a6c8ee5b363c99555cp@chr12:110796949..110796955, +
2.66e-39FFCP PHASE1:Mm9::chr12:110796949..110796955,+#_10acdac7b68d68a6c8ee5b363c99555cp@chr12:110796949..110796955, +
4.15e-39FFCP PHASE1:Mm9::chr2:90730407..90730420,+#_1e93e35f5193853423e151bb64fae9aep@chr2:90730407..90730420, +
4.15e-39FFCP PHASE1:Mm9::chr5:135039704..135039724,-#_1e93e35f5193853423e151bb64fae9aep@chr5:135039704..135039724, -
4.15e-39FFCP PHASE2:Mm9::chr1:155500060..155500061,+#_1e93e35f5193853423e151bb64fae9aep19@Rgs8
4.15e-39FFCP PHASE2:Mm9::chr2:90730407..90730420,+#_1e93e35f5193853423e151bb64fae9aep@chr2:90730407..90730420, +
4.15e-39FFCP PHASE1:Mm9::chr16:43072335..43072346,+#_1e93e35f5193853423e151bb64fae9aep@chr16:43072335..43072346, +
4.15e-39FFCP PHASE1:Mm9::chr1:155500060..155500061,+#_1e93e35f5193853423e151bb64fae9aep19@Rgs8
4.15e-39FFCP PHASE2:Mm9::chr5:135039704..135039724,-#_1e93e35f5193853423e151bb64fae9aep@chr5:135039704..135039724, -
4.15e-39FFCP PHASE2:Mm9::chr16:43072335..43072346,+#_1e93e35f5193853423e151bb64fae9ae+, p@chr16:43072335..43072346
1.17e-38FFCP PHASE2:Mm9::chr16:89818560..89818572,-#_4b57bab93d80a01fd3e2305c2f1de893p17@Tiam1
1.17e-38FFCP PHASE1:Mm9::chr10:77867856..77867866,-#_4b57bab93d80a01fd3e2305c2f1de893p@chr10:77867856..77867866, -
1.17e-38FFCP PHASE1:Mm9::chr7:6659121..6659133,-#_4b57bab93d80a01fd3e2305c2f1de893p@chr7:6659121..6659133, -
1.17e-38FFCP PHASE1:Mm9::chr16:89818560..89818572,-#_4b57bab93d80a01fd3e2305c2f1de893p17@Tiam1
1.17e-38FFCP PHASE2:Mm9::chr7:6659121..6659133,-#_4b57bab93d80a01fd3e2305c2f1de893p@chr7:6659121..6659133, -
1.17e-38FFCP PHASE2:Mm9::chr10:77867856..77867866,-#_4b57bab93d80a01fd3e2305c2f1de893p@chr10:77867856..77867866, -
2.09e-38FFCP PHASE2:Mm9::chr6:48398099..48398121,+#_9f34578fce214e86b033a5cd6bebc9fbp2@LOC100505089, p2@Sspo
2.09e-38FFCP PHASE1:Mm9::chr6:48398099..48398121,+#_9f34578fce214e86b033a5cd6bebc9fbp2@LOC100505089, p2@Sspo
8.86e-38FFCP PHASE1:Mm9::chr4:47004694..47004703,-#_2a5ab6d9bb76aed789410bdc74760646p8@Gabbr2
8.86e-38FFCP PHASE2:Mm9::chr4:47004694..47004703,-#_2a5ab6d9bb76aed789410bdc74760646p8@Gabbr2
1.18e-37FFCP PHASE1:Mm9::chr2:177853871..177853888,+#_dd5f01a012d61c84bbbd13e3f513ae20p18@Phactr3
1.18e-37FFCP PHASE2:Mm9::chr2:177853871..177853888,+#_dd5f01a012d61c84bbbd13e3f513ae20p18@Phactr3
2.1e-37FFCP PHASE2:Mm9::chr4:147588847..147588858,-#_434cec502fe65fff2fc52915ba072e37p@chr4:147588847..147588858, -
2.1e-37FFCP PHASE1:Mm9::chr4:147588847..147588858,-#_434cec502fe65fff2fc52915ba072e37p@chr4:147588847..147588858, -
3.72e-37FFCP PHASE2:Mm9::chr2:70439780..70439819,+#_0c4a3cc964b79cf155361424dcd866cap@chr2:70439780..70439819, +
3.72e-37FFCP PHASE1:Mm9::chr2:70439780..70439819,+#_0c4a3cc964b79cf155361424dcd866cap@chr2:70439780..70439819, +
3.67e-34FFCP PHASE2:Mm9::chr11:68505408..68505413,+#_5815df2f8062976dd43262ca4a0078e5p8@Myh10
3.67e-34FFCP PHASE1:Mm9::chr11:68505408..68505413,+#_5815df2f8062976dd43262ca4a0078e5p8@Myh10
3.67e-34FFCP PHASE2:Mm9::chr19:40804786..40804795,-#_5815df2f8062976dd43262ca4a0078e5p@chr19:40804786..40804795, -
3.67e-34FFCP PHASE1:Mm9::chr19:40804786..40804795,-#_5815df2f8062976dd43262ca4a0078e5p@chr19:40804786..40804795, -
4.74e-34FFCP PHASE1:Mm9::chr2:102621960..102621969,+#_51247034391a85e034f2180cee513fa2p@chr2:102621960..102621969, +
4.74e-34FFCP PHASE2:Mm9::chr5:31441248..31441260,-#_51247034391a85e034f2180cee513fa2p1@Ucn
4.74e-34FFCP PHASE1:Mm9::chr5:31441248..31441260,-#_51247034391a85e034f2180cee513fa2p1@Ucn
4.74e-34FFCP PHASE2:Mm9::chr2:102621960..102621969,+#_51247034391a85e034f2180cee513fa2p@chr2:102621960..102621969, +
1.31e-33FFCP PHASE1:Mm9::chr14:31438329..31438344,-#_f49da704a25c7bb63a62874814757f72p@chr14:31438329..31438344, -
1.31e-33FFCP PHASE1:Mm9::chr7:116903722..116903727,-#_f49da704a25c7bb63a62874814757f72p@chr7:116903722..116903727, -
1.31e-33FFCP PHASE2:Mm9::chr14:31438329..31438344,-#_f49da704a25c7bb63a62874814757f72p@chr14:31438329..31438344, -
1.31e-33FFCP PHASE2:Mm9::chr15:59373755..59373758,-#_f49da704a25c7bb63a62874814757f72p@chr15:59373755..59373758, -
1.31e-33FFCP PHASE1:Mm9::chr15:59373755..59373758,-#_f49da704a25c7bb63a62874814757f72p@chr15:59373755..59373758, -
1.31e-33FFCP PHASE2:Mm9::chr7:116903722..116903727,-#_f49da704a25c7bb63a62874814757f72p@chr7:116903722..116903727, -
2.18e-33FFCP PHASE1:Mm9::chr14:54813640..54813649,+#_e690a391cbb55e9f9db476eb1da5ef0bp@chr14:54813640..54813649, +
2.18e-33FFCP PHASE2:Mm9::chr14:54813640..54813649,+#_e690a391cbb55e9f9db476eb1da5ef0b+, p@chr14:54813640..54813649
7.68e-33FFCP PHASE2:Mm9::chr18:62483890..62483902,+#_7b8be4c6a266daaa6e40d5883de640eep3@Htr4
7.68e-33FFCP PHASE2:Mm9::chr19:55969998..55970001,+#_7b8be4c6a266daaa6e40d5883de640eep40@Tcf7l2