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UBERON:0002316

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Name:white matter
Namespace:FANTOM
Definition:"Heterogeneous cluster of neurites in the brain and the spinal cord." [Wikipedia:White_matter]
Xrefs:
links:

AEO:0000139
FMA:83929
[1]
[ 200px-Spinal_nerve.svg.png 200px-Spinal_nerve.svg.png]
MA:0001135
ncithesaurus:White_Matter
NIF_GrossAnatomy:Class_2
OpenCyc:Mx4rwOAsDZwpEbGdrcN5Y29ycA
TAO:0000145
TAO:0002142
TAO:0002143

ZFA:0001682
Synonyms: "substantia alba" RELATED LATIN [Wikipedia:White_matter]
"white matter of neuraxis" EXACT [FMA:83929]
"white substance" EXACT []
Comments:This class was created automatically from a combination of ontologies
Alt_id: UBERON:FMA_83929-MA_0001135
Subset: uberon_slim
vertebrate_core

Ontology association
Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.

link to ontology dataset
data


Parents

is_a:UBERON:0011215(central nervous system cell part cluster)
part_of:UBERON:0001017(central nervous system)



Children

is a:UBERON:0003544 (brain white matter)
part of:UBERON:0007702 (tract of brain)

Ontology Tree: Loaded from BioPortal


FF samples
It includes FANTOM5 samples that overlay the Uberon ontology


Human (Homo sapiens)


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0002316 (white matter), sorted by p-values
Analyst: Hideya Kawaji

link to source dataset
human : data
mouse : data


P-valueFFCPShort description
5.42e-195FFCP PHASE2:Hg19::chr17:73689469..73689476,-#_1a93c31fc567e45f0646cde12c5cd4a8p@chr17:73689469..73689476, -
5.42e-195FFCP PHASE1:Hg19::chr5:60927228..60927236,-#_1a93c31fc567e45f0646cde12c5cd4a8p3@BC032909, p3@BC032910
5.42e-195FFCP PHASE2:Hg19::chr15:93827399..93827403,+#_1a93c31fc567e45f0646cde12c5cd4a8p@chr15:93827399..93827403, +
5.42e-195FFCP PHASE2:Hg19::chr5:60927228..60927236,-#_1a93c31fc567e45f0646cde12c5cd4a8p3@BC032909, p3@BC032910
5.42e-195FFCP PHASE1:Hg19::chr15:93827399..93827403,+#_1a93c31fc567e45f0646cde12c5cd4a8p@chr15:93827399..93827403, +
5.42e-195FFCP PHASE1:Hg19::chr17:73689469..73689476,-#_1a93c31fc567e45f0646cde12c5cd4a8-, p@chr17:73689469..73689476
5.42e-195FFCP PHASE2:Hg19::chr14:36462819..36462832,+#_1a93c31fc567e45f0646cde12c5cd4a8p@chr14:36462819..36462832, +
5.42e-195FFCP PHASE1:Hg19::chr14:36462819..36462832,+#_1a93c31fc567e45f0646cde12c5cd4a8p@chr14:36462819..36462832, +
9.37e-99FFCP PHASE2:Hg19::chr11:110248322..110248329,-#_dc5393366f83dc734cadc22cd25c7319p@chr11:110248322..110248329, -
9.37e-99FFCP PHASE2:Hg19::chr12:78359873..78359882,+#_dc5393366f83dc734cadc22cd25c7319p41@NAV3
9.37e-99FFCP PHASE1:Hg19::chr11:110248322..110248329,-#_dc5393366f83dc734cadc22cd25c7319p@chr11:110248322..110248329, -
9.37e-99FFCP PHASE2:Hg19::chr14:33926303..33926307,-#_dc5393366f83dc734cadc22cd25c7319p@chr14:33926303..33926307, -
9.37e-99FFCP PHASE2:Hg19::chr2:232548018..232548022,-#_dc5393366f83dc734cadc22cd25c7319p@chr2:232548018..232548022, -
9.37e-99FFCP PHASE1:Hg19::chr2:232548018..232548022,-#_dc5393366f83dc734cadc22cd25c7319p@chr2:232548018..232548022, -
9.37e-99FFCP PHASE1:Hg19::chr14:33926303..33926307,-#_dc5393366f83dc734cadc22cd25c7319p@chr14:33926303..33926307, -
9.37e-99FFCP PHASE1:Hg19::chr12:78359873..78359882,+#_dc5393366f83dc734cadc22cd25c7319p41@NAV3
2.55e-98FFCP PHASE2:Hg19::chr3:15374659..15374696,-#_bb20359b6ca1dd422c0492d0d6bc330ap10@SH3BP5
2.55e-98FFCP PHASE1:Hg19::chr3:15374659..15374696,-#_bb20359b6ca1dd422c0492d0d6bc330ap10@SH3BP5
2.55e-98FFCP PHASE1:Hg19::chr19:35788742..35788752,+#_bb20359b6ca1dd422c0492d0d6bc330ap@chr19:35788742..35788752, +
2.55e-98FFCP PHASE2:Hg19::chr19:35788742..35788752,+#_bb20359b6ca1dd422c0492d0d6bc330ap@chr19:35788742..35788752, +
1.23e-66FFCP PHASE1:Hg19::chr7:124391226..124391235,-#_737825bdb78baf7d2024c0b749a810a9p@chr7:124391226..124391235, -
1.23e-66FFCP PHASE1:Hg19::chr17:72823919..72823924,-#_737825bdb78baf7d2024c0b749a810a9p@chr17:72823919..72823924, -
1.23e-66FFCP PHASE2:Hg19::chr10:73479518..73479527,-#_737825bdb78baf7d2024c0b749a810a9p5@C10orf105
1.23e-66FFCP PHASE1:Hg19::chr12:78359680..78359686,+#_737825bdb78baf7d2024c0b749a810a9p32@NAV3
1.23e-66FFCP PHASE1:Hg19::chr10:73479518..73479527,-#_737825bdb78baf7d2024c0b749a810a9p5@C10orf105
1.23e-66FFCP PHASE1:Hg19::chr8:42037488..42037504,+#_737825bdb78baf7d2024c0b749a810a9p@chr8:42037488..42037504, +
1.23e-66FFCP PHASE2:Hg19::chr12:78359680..78359686,+#_737825bdb78baf7d2024c0b749a810a9p32@NAV3
1.23e-66FFCP PHASE2:Hg19::chr8:42037488..42037504,+#_737825bdb78baf7d2024c0b749a810a9p@chr8:42037488..42037504, +
1.23e-66FFCP PHASE2:Hg19::chr7:124391226..124391235,-#_737825bdb78baf7d2024c0b749a810a9p@chr7:124391226..124391235, -
1.23e-66FFCP PHASE2:Hg19::chr17:72823919..72823924,-#_737825bdb78baf7d2024c0b749a810a9-, p@chr17:72823919..72823924
2.39e-66FFCP PHASE2:Hg19::chr6:163681762..163681767,+#_6c6a09313f0d665f0739ddab9e612ed3p@chr6:163681762..163681767, +
2.39e-66FFCP PHASE2:Hg19::chr10:61043452..61043467,-#_6c6a09313f0d665f0739ddab9e612ed3p16@FAM13C
2.39e-66FFCP PHASE1:Hg19::chr6:163681762..163681767,+#_6c6a09313f0d665f0739ddab9e612ed3p@chr6:163681762..163681767, +
2.39e-66FFCP PHASE1:Hg19::chr10:61043452..61043467,-#_6c6a09313f0d665f0739ddab9e612ed3p16@FAM13C
2.39e-66FFCP PHASE1:Hg19::chr10:25012236..25012245,-#_6c6a09313f0d665f0739ddab9e612ed3p24@ARHGAP21
2.39e-66FFCP PHASE2:Hg19::chr10:25012236..25012245,-#_6c6a09313f0d665f0739ddab9e612ed3p24@ARHGAP21
4.66e-66FFCP PHASE1:Hg19::chr13:99135698..99135706,+#_c8c7fd5d1cc4cab712fc1f984566fd30p@chr13:99135698..99135706, +
4.66e-66FFCP PHASE2:Hg19::chr13:99135698..99135706,+#_c8c7fd5d1cc4cab712fc1f984566fd30p@chr13:99135698..99135706, +
4.66e-66FFCP PHASE2:Hg19::chr7:129012882..129012891,-#_c8c7fd5d1cc4cab712fc1f984566fd30p@chr7:129012882..129012891, -
4.66e-66FFCP PHASE2:Hg19::chr4:645709..645712,+#_c8c7fd5d1cc4cab712fc1f984566fd30p15@PDE6B
4.66e-66FFCP PHASE2:Hg19::chr5:35089799..35089804,-#_c8c7fd5d1cc4cab712fc1f984566fd30p20@PRLR
4.66e-66FFCP PHASE1:Hg19::chr4:174293011..174293022,-#_c8c7fd5d1cc4cab712fc1f984566fd30p@chr4:174293011..174293022, -
4.66e-66FFCP PHASE1:Hg19::chr4:645709..645712,+#_c8c7fd5d1cc4cab712fc1f984566fd30p15@PDE6B
4.66e-66FFCP PHASE2:Hg19::chr5:35089832..35089839,-#_c8c7fd5d1cc4cab712fc1f984566fd30p26@PRLR
4.66e-66FFCP PHASE1:Hg19::chr8:101522298..101522305,-#_c8c7fd5d1cc4cab712fc1f984566fd30p@chr8:101522298..101522305, -
4.66e-66FFCP PHASE1:Hg19::chr7:129015806..129015815,+#_c8c7fd5d1cc4cab712fc1f984566fd30p@chr7:129015806..129015815, +
4.66e-66FFCP PHASE1:Hg19::chr5:35089799..35089804,-#_c8c7fd5d1cc4cab712fc1f984566fd30p20@PRLR
4.66e-66FFCP PHASE2:Hg19::chr4:174293011..174293022,-#_c8c7fd5d1cc4cab712fc1f984566fd30-, p@chr4:174293011..174293022
4.66e-66FFCP PHASE1:Hg19::chr17:40120071..40120085,+#_c8c7fd5d1cc4cab712fc1f984566fd30p15@CNP
4.66e-66FFCP PHASE1:Hg19::chr7:129012882..129012891,-#_c8c7fd5d1cc4cab712fc1f984566fd30p@chr7:129012882..129012891, -
4.66e-66FFCP PHASE1:Hg19::chr5:35089832..35089839,-#_c8c7fd5d1cc4cab712fc1f984566fd30p26@PRLR
4.66e-66FFCP PHASE2:Hg19::chr8:101522298..101522305,-#_c8c7fd5d1cc4cab712fc1f984566fd30p@chr8:101522298..101522305, -
4.66e-66FFCP PHASE2:Hg19::chr17:40120071..40120085,+#_c8c7fd5d1cc4cab712fc1f984566fd30p15@CNP
4.66e-66FFCP PHASE2:Hg19::chr7:129015806..129015815,+#_c8c7fd5d1cc4cab712fc1f984566fd30p@chr7:129015806..129015815, +
4.66e-66FFCP PHASE1:Hg19::chr14:91199850..91199861,-#_c8c7fd5d1cc4cab712fc1f984566fd30p@chr14:91199850..91199861, -
4.66e-66FFCP PHASE2:Hg19::chr14:91199850..91199861,-#_c8c7fd5d1cc4cab712fc1f984566fd30p@chr14:91199850..91199861, -
1.46e-50FFCP PHASE2:Hg19::chr6:170571770..170571782,-#_2b45ff122e9e5b95239fec2eafcab881p2@LOC154449
1.46e-50FFCP PHASE1:Hg19::chr6:170571770..170571782,-#_2b45ff122e9e5b95239fec2eafcab881p2@LOC154449
2.42e-50FFCP PHASE1:Hg19::chr12:106697974..106697990,-#_5d9a20992abb66a75c037553ed0539aap31@CKAP4
2.42e-50FFCP PHASE2:Hg19::chr11:133996343..133996351,+#_5d9a20992abb66a75c037553ed0539aap8@JAM3
2.42e-50FFCP PHASE2:Hg19::chrX:103031196..103031205,-#_5d9a20992abb66a75c037553ed0539aap@chrX:103031196..103031205, -
2.42e-50FFCP PHASE1:Hg19::chr11:133996343..133996351,+#_5d9a20992abb66a75c037553ed0539aap8@JAM3
2.42e-50FFCP PHASE2:Hg19::chr7:30202318..30202329,+#_5d9a20992abb66a75c037553ed0539aap@chr7:30202318..30202329, +
2.42e-50FFCP PHASE2:Hg19::chr4:74005833..74005844,-#_5d9a20992abb66a75c037553ed0539aap@chr4:74005833..74005844, -
2.42e-50FFCP PHASE1:Hg19::chrX:103031196..103031205,-#_5d9a20992abb66a75c037553ed0539aap@chrX:103031196..103031205, -
2.42e-50FFCP PHASE1:Hg19::chr7:30202318..30202329,+#_5d9a20992abb66a75c037553ed0539aap@chr7:30202318..30202329, +
2.42e-50FFCP PHASE1:Hg19::chr4:74005833..74005844,-#_5d9a20992abb66a75c037553ed0539aap@chr4:74005833..74005844, -
2.42e-50FFCP PHASE2:Hg19::chr10:7454514..7454525,-#_5d9a20992abb66a75c037553ed0539aap@chr10:7454514..7454525, -
2.42e-50FFCP PHASE2:Hg19::chr19:15751984..15751994,+#_5d9a20992abb66a75c037553ed0539aap6@CYP4F3
2.42e-50FFCP PHASE2:Hg19::chr12:106697974..106697990,-#_5d9a20992abb66a75c037553ed0539aap31@CKAP4
2.42e-50FFCP PHASE1:Hg19::chr10:7454514..7454525,-#_5d9a20992abb66a75c037553ed0539aap@chr10:7454514..7454525, -
2.42e-50FFCP PHASE1:Hg19::chr19:15751984..15751994,+#_5d9a20992abb66a75c037553ed0539aap6@CYP4F3
3.99e-50FFCP PHASE2:Hg19::chr6:164364681..164364684,-#_1f60058f4d6e52b5f6b994ab299952f6p@chr6:164364681..164364684, -
3.99e-50FFCP PHASE1:Hg19::chr6:164364681..164364684,-#_1f60058f4d6e52b5f6b994ab299952f6p@chr6:164364681..164364684, -
3.99e-50FFCP PHASE1:Hg19::chr3:160203278..160203289,-#_1f60058f4d6e52b5f6b994ab299952f6p8@TRIM59
3.99e-50FFCP PHASE2:Hg19::chr3:160203278..160203289,-#_1f60058f4d6e52b5f6b994ab299952f6p8@TRIM59
3.99e-50FFCP PHASE2:Hg19::chr9:20927844..20927855,+#_1f60058f4d6e52b5f6b994ab299952f6p@chr9:20927844..20927855, +
3.99e-50FFCP PHASE1:Hg19::chr17:36726052..36726061,-#_1f60058f4d6e52b5f6b994ab299952f6p@chr17:36726052..36726061, -
3.99e-50FFCP PHASE2:Hg19::chr17:36726052..36726061,-#_1f60058f4d6e52b5f6b994ab299952f6p@chr17:36726052..36726061, -
3.99e-50FFCP PHASE2:Hg19::chr11:45922629..45922637,+#_1f60058f4d6e52b5f6b994ab299952f6p@chr11:45922629..45922637, +
3.99e-50FFCP PHASE1:Hg19::chr9:20927844..20927855,+#_1f60058f4d6e52b5f6b994ab299952f6p@chr9:20927844..20927855, +
3.99e-50FFCP PHASE1:Hg19::chr11:45922629..45922637,+#_1f60058f4d6e52b5f6b994ab299952f6p@chr11:45922629..45922637, +
6.58e-50FFCP PHASE2:Hg19::chr12:99288459..99288464,-#_5b42d5b45a0bedf494a97b335180eb2dp38@ANKS1B
6.58e-50FFCP PHASE1:Hg19::chr3:190578500..190578506,-#_5b42d5b45a0bedf494a97b335180eb2dp@chr3:190578500..190578506, -
6.58e-50FFCP PHASE2:Hg19::chrX:28605300..28605301,+#_5b42d5b45a0bedf494a97b335180eb2dp8@IL1RAPL1
6.58e-50FFCP PHASE2:Hg19::chr11:67190503..67190512,+#_5b42d5b45a0bedf494a97b335180eb2dp8@CARNS1
6.58e-50FFCP PHASE1:Hg19::chr9:112191163..112191174,-#_5b42d5b45a0bedf494a97b335180eb2dp10@PTPN3
6.58e-50FFCP PHASE1:Hg19::chr3:10706167..10706179,-#_5b42d5b45a0bedf494a97b335180eb2dp@chr3:10706167..10706179, -
6.58e-50FFCP PHASE2:Hg19::chr11:117585539..117585541,-#_5b42d5b45a0bedf494a97b335180eb2dp@chr11:117585539..117585541, -
6.58e-50FFCP PHASE1:Hg19::chr11:67190503..67190512,+#_5b42d5b45a0bedf494a97b335180eb2dp8@CARNS1
6.58e-50FFCP PHASE1:Hg19::chr11:117585539..117585541,-#_5b42d5b45a0bedf494a97b335180eb2dp@chr11:117585539..117585541, -
6.58e-50FFCP PHASE1:Hg19::chr6:133119649..133119655,-#_5b42d5b45a0bedf494a97b335180eb2dp6@C6orf192
6.58e-50FFCP PHASE2:Hg19::chr3:190578500..190578506,-#_5b42d5b45a0bedf494a97b335180eb2dp@chr3:190578500..190578506, -
6.58e-50FFCP PHASE1:Hg19::chr12:99288459..99288464,-#_5b42d5b45a0bedf494a97b335180eb2dp38@ANKS1B
6.58e-50FFCP PHASE2:Hg19::chr4:7412700..7412704,+#_5b42d5b45a0bedf494a97b335180eb2dp@chr4:7412700..7412704, +
6.58e-50FFCP PHASE1:Hg19::chr2:219610931..219610941,+#_5b42d5b45a0bedf494a97b335180eb2dp13@TTLL4
6.58e-50FFCP PHASE2:Hg19::chr3:10706167..10706179,-#_5b42d5b45a0bedf494a97b335180eb2dp@chr3:10706167..10706179, -
6.58e-50FFCP PHASE1:Hg19::chr4:7412700..7412704,+#_5b42d5b45a0bedf494a97b335180eb2dp@chr4:7412700..7412704, +
6.58e-50FFCP PHASE2:Hg19::chr9:112191163..112191174,-#_5b42d5b45a0bedf494a97b335180eb2dp10@PTPN3
6.58e-50FFCP PHASE2:Hg19::chr2:219610931..219610941,+#_5b42d5b45a0bedf494a97b335180eb2dp13@TTLL4










Property "Property value" (as page type) with input value "UBPROP:0000001 "Multi-tissue structure comprised largely of myelinated axons.[TAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.