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UBERON:0002331

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Name:umbilical cord
Namespace:FANTOM
Definition:"The connecting cord from the developing embryo or fetus to the placenta. During prenatal development, the umbilical cord comes from the same zygote as the fetus and (in humans) normally contains two arteries (the umbilical arteries) and one vein (the umbilical vein), buried within Wharton's jelly. The umbilical vein supplies the fetus with oxygenated, nutrient-rich blood from the placenta. Conversely, the umbilical arteries return the deoxygenated, nutrient-depleted blood[WP]." [Wikipedia:Umbilical_cord]
Xrefs:
links:

BTO:0001415
EFO:0001415
EHDAA2:0000312
EHDAA:158
EMAPA:26115
EV:0100127
FMA:85541
GAID:517
[1]
MAT:0000280
MESH:A.16.254.789
MIAA:0000280
ncithesaurus:Umbilical_Cord
OpenCyc:Mx4rvyewDJwpEbGdrcN5Y29ycA

SCTID:280644003
Synonyms: "birth cord" RELATED [Wikipedia:Umbilical_cord]
"connecting stalk" RELATED []
"funiculus umbilicalis" RELATED LATIN [Wikipedia:Umbilical_cord]
"yolk stalk" RELATED [BTO:0001415]
Comments:This class was created automatically from a combination of ontologies
Alt_id: UBERON:FMA_85541-MIAA_0000280
Subset: uberon_slim

Ontology association
Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.

link to ontology dataset
data


Parents

is_a:UBERON:0000478(extraembryonic structure),UBERON:0004120(mesoderm-derived structure)
develops_from:UBERON:0007806(connecting stalk)



Children

derives from:FF:0010057 (human umbilical cord - fetal sample)
part of:UBERON:0003422 (mesenchyme of umbilical cord),FF:0104053 (umbilical cord blood sample)

Ontology Tree: Loaded from BioPortal


FF samples
It includes FANTOM5 samples that overlay the Uberon ontology


Human (Homo sapiens)

... further results


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0002331 (umbilical cord), sorted by p-values
Analyst: Hideya Kawaji

link to source dataset
human : data
mouse : data


P-valueFFCPShort description
5.79e-79FFCP PHASE2:Hg19::chr7:135931480..135931486,+#_b1f53b4104117419432a90bde3004659p@chr7:135931480..135931486, +
5.79e-79FFCP PHASE1:Hg19::chr7:135931480..135931486,+#_b1f53b4104117419432a90bde3004659p@chr7:135931480..135931486, +
5.79e-79FFCP PHASE2:Hg19::chr10:120921270..120921282,-#_b1f53b4104117419432a90bde3004659p@chr10:120921270..120921282, -
5.79e-79FFCP PHASE1:Hg19::chr10:120921270..120921282,-#_b1f53b4104117419432a90bde3004659p@chr10:120921270..120921282, -
2.16e-63FFCP PHASE1:Hg19::chr1:205744117..205744127,-#_6a61d131cb0e221659f34618ed5a25d9p8@RAB7L1
2.16e-63FFCP PHASE2:Hg19::chr1:205744117..205744127,-#_6a61d131cb0e221659f34618ed5a25d9p8@RAB7L1
1.1e-59FFCP PHASE1:Hg19::chr19:10983266..10983276,-#_382bd565ee725ff3582ffa4a19459dedp@chr19:10983266..10983276, -
1.1e-59FFCP PHASE2:Hg19::chr6:138023015..138023024,-#_382bd565ee725ff3582ffa4a19459dedp@chr6:138023015..138023024, -
1.1e-59FFCP PHASE1:Hg19::chr12:77198556..77198565,+#_382bd565ee725ff3582ffa4a19459dedp@chr12:77198556..77198565, +
1.1e-59FFCP PHASE1:Hg19::chr7:102945487..102945492,+#_382bd565ee725ff3582ffa4a19459dedp@chr7:102945487..102945492, +
1.1e-59FFCP PHASE1:Hg19::chr14:76017386..76017395,-#_382bd565ee725ff3582ffa4a19459dedp@chr14:76017386..76017395, -
1.1e-59FFCP PHASE2:Hg19::chr15:43323772..43323785,-#_382bd565ee725ff3582ffa4a19459dedp@chr15:43323772..43323785, -
1.1e-59FFCP PHASE1:Hg19::chr4:167932279..167932291,-#_382bd565ee725ff3582ffa4a19459dedp@chr4:167932279..167932291, -
1.1e-59FFCP PHASE2:Hg19::chr6:484679..484683,+#_382bd565ee725ff3582ffa4a19459dedp@chr6:484679..484683, +
1.1e-59FFCP PHASE1:Hg19::chr3:189266272..189266296,-#_382bd565ee725ff3582ffa4a19459dedp@chr3:189266272..189266296, -
1.1e-59FFCP PHASE2:Hg19::chr5:146717844..146717861,+#_382bd565ee725ff3582ffa4a19459ded+, p@chr5:146717844..146717861
1.1e-59FFCP PHASE2:Hg19::chr19:49488858..49488869,-#_382bd565ee725ff3582ffa4a19459dedp@chr19:49488858..49488869, -
1.1e-59FFCP PHASE1:Hg19::chr3:75655787..75655802,-#_382bd565ee725ff3582ffa4a19459dedp@chr3:75655787..75655802, -
1.1e-59FFCP PHASE2:Hg19::chr2:228216535..228216554,+#_382bd565ee725ff3582ffa4a19459dedp14@MFF
1.1e-59FFCP PHASE2:Hg19::chr3:45926344..45926350,-#_382bd565ee725ff3582ffa4a19459dedp@chr3:45926344..45926350, -
1.1e-59FFCP PHASE2:Hg19::chr4:167982726..167982736,-#_382bd565ee725ff3582ffa4a19459dedp@chr4:167982726..167982736, -
1.1e-59FFCP PHASE2:Hg19::chr7:106363901..106363915,-#_382bd565ee725ff3582ffa4a19459dedp@chr7:106363901..106363915, -
1.1e-59FFCP PHASE2:Hg19::chr14:76017349..76017357,-#_382bd565ee725ff3582ffa4a19459dedp@chr14:76017349..76017357, -
1.1e-59FFCP PHASE1:Hg19::chr2:148296759..148296767,+#_382bd565ee725ff3582ffa4a19459dedp@chr2:148296759..148296767, +
1.1e-59FFCP PHASE2:Hg19::chr20:39574012..39574015,+#_382bd565ee725ff3582ffa4a19459dedp@chr20:39574012..39574015, +
1.1e-59FFCP PHASE1:Hg19::chr7:135705379..135705388,+#_382bd565ee725ff3582ffa4a19459dedp@chr7:135705379..135705388, +
1.1e-59FFCP PHASE1:Hg19::chr6:87324164..87324175,+#_382bd565ee725ff3582ffa4a19459dedp@chr6:87324164..87324175, +
1.1e-59FFCP PHASE2:Hg19::chr7:45954712..45954720,-#_382bd565ee725ff3582ffa4a19459dedp41@IGFBP3
1.1e-59FFCP PHASE2:Hg19::chr10:15013428..15013456,-#_382bd565ee725ff3582ffa4a19459dedp@chr10:15013428..15013456, -
1.1e-59FFCP PHASE2:Hg19::chr8:56618992..56618998,+#_382bd565ee725ff3582ffa4a19459dedp@chr8:56618992..56618998, +
1.1e-59FFCP PHASE2:Hg19::chr2:53245239..53245255,-#_382bd565ee725ff3582ffa4a19459dedp@chr2:53245239..53245255, -
1.1e-59FFCP PHASE1:Hg19::chr2:53245239..53245255,-#_382bd565ee725ff3582ffa4a19459dedp@chr2:53245239..53245255, -
1.1e-59FFCP PHASE1:Hg19::chr7:106363901..106363915,-#_382bd565ee725ff3582ffa4a19459ded-, p@chr7:106363901..106363915
1.1e-59FFCP PHASE1:Hg19::chr12:129054695..129054717,-#_382bd565ee725ff3582ffa4a19459dedp@chr12:129054695..129054717, -
1.1e-59FFCP PHASE1:Hg19::chr1:172807491..172807499,-#_382bd565ee725ff3582ffa4a19459dedp@chr1:172807491..172807499, -
1.1e-59FFCP PHASE1:Hg19::chr3:180050773..180050786,+#_382bd565ee725ff3582ffa4a19459dedp@chr3:180050773..180050786, +
1.1e-59FFCP PHASE1:Hg19::chr21:18180040..18180058,-#_382bd565ee725ff3582ffa4a19459dedp@chr21:18180040..18180058, -
1.1e-59FFCP PHASE2:Hg19::chr3:111311854..111311862,-#_382bd565ee725ff3582ffa4a19459dedp@chr3:111311854..111311862, -
1.1e-59FFCP PHASE2:Hg19::chr1:146746588..146746604,+#_382bd565ee725ff3582ffa4a19459dedp5@CHD1L
1.1e-59FFCP PHASE1:Hg19::chr9:74995205..74995211,-#_382bd565ee725ff3582ffa4a19459dedp@chr9:74995205..74995211, -
1.1e-59FFCP PHASE1:Hg19::chr6:491208..491217,-#_382bd565ee725ff3582ffa4a19459dedp@chr6:491208..491217, -
1.1e-59FFCP PHASE2:Hg19::chr2:65209811..65209818,+#_382bd565ee725ff3582ffa4a19459dedp@chr2:65209811..65209818, +
1.1e-59FFCP PHASE2:Hg19::chr6:31150998..31151005,-#_382bd565ee725ff3582ffa4a19459dedp@chr6:31150998..31151005, -
1.1e-59FFCP PHASE1:Hg19::chr7:142250929..142250940,-#_382bd565ee725ff3582ffa4a19459dedp3@AF430683, p3@AF430684, p3@AF430685
1.1e-59FFCP PHASE1:Hg19::chr20:22771662..22771675,+#_382bd565ee725ff3582ffa4a19459dedp@chr20:22771662..22771675, +
1.1e-59FFCP PHASE1:Hg19::chr17:64034078..64034124,-#_382bd565ee725ff3582ffa4a19459dedp@chr17:64034078..64034124, -
1.1e-59FFCP PHASE2:Hg19::chr3:180050773..180050786,+#_382bd565ee725ff3582ffa4a19459dedp@chr3:180050773..180050786, +
1.1e-59FFCP PHASE2:Hg19::chr10:31996512..31996530,-#_382bd565ee725ff3582ffa4a19459dedp5@ENST00000433770
1.1e-59FFCP PHASE1:Hg19::chr19:53511749..53511757,-#_382bd565ee725ff3582ffa4a19459dedp@chr19:53511749..53511757, -
1.1e-59FFCP PHASE2:Hg19::chr20:22771722..22771733,+#_382bd565ee725ff3582ffa4a19459dedp@chr20:22771722..22771733, +
1.1e-59FFCP PHASE1:Hg19::chr14:76957782..76957792,+#_382bd565ee725ff3582ffa4a19459dedp@chr14:76957782..76957792, +
1.1e-59FFCP PHASE2:Hg19::chr2:148278743..148278751,+#_382bd565ee725ff3582ffa4a19459dedp@chr2:148278743..148278751, +
1.1e-59FFCP PHASE2:Hg19::chr10:111805635..111805642,-#_382bd565ee725ff3582ffa4a19459dedp@chr10:111805635..111805642, -
1.1e-59FFCP PHASE1:Hg19::chr1:207627342..207627349,+#_382bd565ee725ff3582ffa4a19459dedp3@CR2
1.1e-59FFCP PHASE1:Hg19::chr4:167957459..167957470,-#_382bd565ee725ff3582ffa4a19459dedp@chr4:167957459..167957470, -
1.1e-59FFCP PHASE2:Hg19::chr9:74986248..74986275,-#_382bd565ee725ff3582ffa4a19459dedp@chr9:74986248..74986275, -
1.1e-59FFCP PHASE1:Hg19::chr10:120924761..120924770,-#_382bd565ee725ff3582ffa4a19459dedp10@SFXN4
1.1e-59FFCP PHASE2:Hg19::chr3:119279086..119279095,+#_382bd565ee725ff3582ffa4a19459dedp@chr3:119279086..119279095, +
1.1e-59FFCP PHASE2:Hg19::chr3:195306394..195306429,-#_382bd565ee725ff3582ffa4a19459dedp5@APOD
1.1e-59FFCP PHASE2:Hg19::chr9:94933452..94933457,+#_382bd565ee725ff3582ffa4a19459dedp@chr9:94933452..94933457, +
1.1e-59FFCP PHASE1:Hg19::chrX:10129363..10129369,+#_382bd565ee725ff3582ffa4a19459dedp@chrX:10129363..10129369, +
1.1e-59FFCP PHASE2:Hg19::chr8:59970765..59970787,-#_382bd565ee725ff3582ffa4a19459dedp@chr8:59970765..59970787, -
1.1e-59FFCP PHASE2:Hg19::chr4:85688154..85688161,-#_382bd565ee725ff3582ffa4a19459dedp@chr4:85688154..85688161, -
1.1e-59FFCP PHASE2:Hg19::chr7:106397632..106397643,+#_382bd565ee725ff3582ffa4a19459dedp@chr7:106397632..106397643, +
1.1e-59FFCP PHASE2:Hg19::chr14:76957775..76957781,+#_382bd565ee725ff3582ffa4a19459dedp@chr14:76957775..76957781, +
1.1e-59FFCP PHASE1:Hg19::chr4:167791926..167791930,-#_382bd565ee725ff3582ffa4a19459dedp@chr4:167791926..167791930, -
1.1e-59FFCP PHASE2:Hg19::chr2:15651894..15651904,-#_382bd565ee725ff3582ffa4a19459dedp4@NBAS
1.1e-59FFCP PHASE1:Hg19::chr3:119281371..119281382,-#_382bd565ee725ff3582ffa4a19459dedp@chr3:119281371..119281382, -
1.1e-59FFCP PHASE1:Hg19::chr2:228216610..228216617,+#_382bd565ee725ff3582ffa4a19459dedp18@MFF
1.1e-59FFCP PHASE2:Hg19::chr6:87324164..87324175,+#_382bd565ee725ff3582ffa4a19459dedp@chr6:87324164..87324175, +
1.1e-59FFCP PHASE1:Hg19::chr19:42682242..42682253,-#_382bd565ee725ff3582ffa4a19459dedp@chr19:42682242..42682253, -
1.1e-59FFCP PHASE2:Hg19::chr4:167951900..167951907,-#_382bd565ee725ff3582ffa4a19459dedp@chr4:167951900..167951907, -
1.1e-59FFCP PHASE1:Hg19::chr7:106397632..106397643,+#_382bd565ee725ff3582ffa4a19459dedp@chr7:106397632..106397643, +
1.1e-59FFCP PHASE2:Hg19::chr21:18180040..18180058,-#_382bd565ee725ff3582ffa4a19459dedp@chr21:18180040..18180058, -
1.1e-59FFCP PHASE1:Hg19::chr2:148282641..148282654,+#_382bd565ee725ff3582ffa4a19459dedp@chr2:148282641..148282654, +
1.1e-59FFCP PHASE1:Hg19::chrX:109653507..109653518,+#_382bd565ee725ff3582ffa4a19459dedp@chrX:109653507..109653518, +
1.1e-59FFCP PHASE1:Hg19::chr19:7599792..7599797,+#_382bd565ee725ff3582ffa4a19459dedp@chr19:7599792..7599797, +
1.1e-59FFCP PHASE1:Hg19::chr7:17543537..17543548,-#_382bd565ee725ff3582ffa4a19459dedp@chr7:17543537..17543548, -
1.1e-59FFCP PHASE1:Hg19::chr9:74997054..74997058,-#_382bd565ee725ff3582ffa4a19459dedp@chr9:74997054..74997058, -
1.1e-59FFCP PHASE2:Hg19::chr7:135705408..135705462,+#_382bd565ee725ff3582ffa4a19459dedp@chr7:135705408..135705462, +
1.1e-59FFCP PHASE1:Hg19::chr6:149490934..149490939,-#_382bd565ee725ff3582ffa4a19459dedp@chr6:149490934..149490939, -
1.1e-59FFCP PHASE1:Hg19::chr3:45926401..45926410,-#_382bd565ee725ff3582ffa4a19459dedp@chr3:45926401..45926410, -
1.1e-59FFCP PHASE1:Hg19::chr19:31524425..31524444,-#_382bd565ee725ff3582ffa4a19459dedp@chr19:31524425..31524444, -
1.1e-59FFCP PHASE2:Hg19::chr7:102945487..102945492,+#_382bd565ee725ff3582ffa4a19459dedp@chr7:102945487..102945492, +
1.1e-59FFCP PHASE1:Hg19::chr1:168204286..168204299,+#_382bd565ee725ff3582ffa4a19459dedp@chr1:168204286..168204299, +
1.1e-59FFCP PHASE1:Hg19::chr21:18170731..18170736,-#_382bd565ee725ff3582ffa4a19459dedp@chr21:18170731..18170736, -
1.1e-59FFCP PHASE2:Hg19::chr2:148293218..148293252,+#_382bd565ee725ff3582ffa4a19459dedp@chr2:148293218..148293252, +
1.1e-59FFCP PHASE2:Hg19::chr19:10987850..10987854,+#_382bd565ee725ff3582ffa4a19459dedp@chr19:10987850..10987854, +
1.1e-59FFCP PHASE1:Hg19::chr11:117957610..117957619,-#_382bd565ee725ff3582ffa4a19459dedp3@LOC100526771
1.1e-59FFCP PHASE1:Hg19::chr3:195306434..195306439,-#_382bd565ee725ff3582ffa4a19459dedp10@APOD
1.1e-59FFCP PHASE2:Hg19::chr9:74996801..74996811,-#_382bd565ee725ff3582ffa4a19459dedp@chr9:74996801..74996811, -
1.1e-59FFCP PHASE2:Hg19::chr5:28145264..28145272,-#_382bd565ee725ff3582ffa4a19459dedp@chr5:28145264..28145272, -
1.1e-59FFCP PHASE1:Hg19::chr19:10987850..10987854,+#_382bd565ee725ff3582ffa4a19459dedp@chr19:10987850..10987854, +
1.1e-59FFCP PHASE1:Hg19::chr5:28145264..28145272,-#_382bd565ee725ff3582ffa4a19459dedp@chr5:28145264..28145272, -
1.1e-59FFCP PHASE1:Hg19::chr1:234631379..234631392,-#_382bd565ee725ff3582ffa4a19459dedp@chr1:234631379..234631392, -
1.1e-59FFCP PHASE2:Hg19::chr15:43323789..43323811,-#_382bd565ee725ff3582ffa4a19459dedp@chr15:43323789..43323811, -
1.1e-59FFCP PHASE2:Hg19::chr6:149464325..149464336,-#_382bd565ee725ff3582ffa4a19459ded-, p@chr6:149464325..149464336
1.1e-59FFCP PHASE2:Hg19::chr10:109197952..109197957,+#_382bd565ee725ff3582ffa4a19459dedp@chr10:109197952..109197957, +
1.1e-59FFCP PHASE2:Hg19::chr1:234631379..234631392,-#_382bd565ee725ff3582ffa4a19459dedp@chr1:234631379..234631392, -
1.1e-59FFCP PHASE1:Hg19::chr4:167938808..167938815,-#_382bd565ee725ff3582ffa4a19459dedp@chr4:167938808..167938815, -