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UBERON:0002412

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Name:vertebra
Namespace:FANTOM
Definition:"Irregular bone that articulates with other vertebrae, or with one other vertebra and the skull or the sacrum[FMA]. All serially repeated ossified, cartilaginous, and ligamentous elements around the notochord (Schultze and Arratia, 1988)[ZFA]." [FMA:9914, Wikipedia:Vertebra, ZFIN:curator]
Xrefs:
links:

AAO:0000691
EFO:0001371
FMA:9914
galen:Vertebra
MA:0000309
ncithesaurus:Vertebra
OpenCyc:Mx4rvt2Dh5wpEbGdrcN5Y29ycA
SCTID:181817002
TAO:0001189
VHOG:0001143
XAO:0004019

ZFA:0001189
Synonyms: "vertebra bone" EXACT []
Comments:Editor notes: Consider changing name to make distinction from inferred superclass 'vertebral element' clear
Alt_id: UBERON:FMA_9914-MA_0000309-ZFA_0001189
Subset: uberon_slim
vertebrate_core

Ontology association
Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.

link to ontology dataset
data


Parents

is_a:UBERON:0002513(endochondral bone),UBERON:0008001(irregular bone),UBERON:0010913(vertebral element),UBERON:0015005(vertebra endochondral element)
develops_from:UBERON:0011094(vertebra cartilage element)
part_of:UBERON:0001130(vertebral column)



Children

part of:CL:0002572 (vertebral mesenchymal stem cell)

Ontology Tree: Loaded from BioPortal


FF samples
It includes FANTOM5 samples that overlay the Uberon ontology


Human (Homo sapiens)

  • 11219-116B4 (Mesenchymal Stem Cells - Vertebral, donor1)


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0002412 (vertebra), sorted by p-values
Analyst: Hideya Kawaji

link to source dataset
human : data
mouse : data


No analysis results










Property "Property value" (as page type) with input value "UBPROP:0000001 "Endochondral bone that forms around the notochord and is part of the vertebral column.[TAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process., Property "Property value" (as page type) with input value "UBPROP:0000001 "Main component of the vertebral column. It consists of two essential parts, a dorsal neural arch and a ventral centrum.[AAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.