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UBERON:0002428

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Name:limb bone
Namespace:FANTOM
Definition:"A bone that is part of a limb [Obol]." [OBOL:automatic]
Xrefs:
links:

EFO:0000880
EFO:0000945
MAT:0000151
MIAA:0000151

ncithesaurus:Bone_of_the_Extremity
Synonyms: "bone of limb" EXACT [OBOL:automatic]
"free limb bone" EXACT [UBERON:cjm, UBERONREF:0000003]
Comments:AO notes: NCITA includes clavicle. MA:'limb bone' is actually a bone of limb or girdle // Note that the formal definition is very inclusive, and includes sesamoids
Alt_id: UBERON:MA_0000688-MIAA_0000151

Ontology association
Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.

link to ontology dataset
data


Parents

is_a:UBERON:0002513(endochondral bone),UBERON:0004375(bone of free limb or fin),UBERON:0015061(limb endochondral element)
develops_from:UBERON:0010881(limb cartilage element)
part_of:UBERON:0002101(limb),UBERON:0004381(skeleton of limb)



Children

is a:UBERON:0003464 (hindlimb bone),UBERON:0003606 (limb long bone)

Ontology Tree: Loaded from BioPortal


FF samples
It includes FANTOM5 samples that overlay the Uberon ontology


Mouse (Mus musculus)


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0002428 (limb bone), sorted by p-values
Analyst: Hideya Kawaji

link to source dataset
human : data
mouse : data


P-valueFFCPShort description
3.4e-49FFCP PHASE2:Mm9::chr11:77624716..77624729,+#_6b914f1752389a452716f2dc2aa64de6p26@Myo18a
3.4e-49FFCP PHASE1:Mm9::chr11:77624716..77624729,+#_6b914f1752389a452716f2dc2aa64de6p26@Myo18a
4.96e-49FFCP PHASE1:Mm9::chr9:21934585..21934591,-#_4b3a70556aaf108bdd6b84f5ee30fcd0p@chr9:21934585..21934591, -
4.96e-49FFCP PHASE2:Mm9::chr9:21934585..21934591,-#_4b3a70556aaf108bdd6b84f5ee30fcd0p@chr9:21934585..21934591, -
4.96e-49FFCP PHASE1:Mm9::chr8:75097542..75097549,+#_4b3a70556aaf108bdd6b84f5ee30fcd0p@chr8:75097542..75097549, +
4.96e-49FFCP PHASE1:Mm9::chr2:32482372..32482381,+#_4b3a70556aaf108bdd6b84f5ee30fcd0p@chr2:32482372..32482381, +
4.96e-49FFCP PHASE2:Mm9::chr8:75097542..75097549,+#_4b3a70556aaf108bdd6b84f5ee30fcd0p@chr8:75097542..75097549, +
4.96e-49FFCP PHASE2:Mm9::chr2:32482372..32482381,+#_4b3a70556aaf108bdd6b84f5ee30fcd0p@chr2:32482372..32482381, +
3.15e-44FFCP PHASE2:Mm9::chr6:51525810..51525817,+#_7e781031c4401c9a645fa42e6cb89dabp@chr6:51525810..51525817, +
3.15e-44FFCP PHASE1:Mm9::chr6:51525810..51525817,+#_7e781031c4401c9a645fa42e6cb89dabp@chr6:51525810..51525817, +
9.78e-40FFCP PHASE1:Mm9::chr19:4876870..4876880,-#_6e4fff2082769cadc934a1cdbfa7a6eap@chr19:4876870..4876880, -
9.78e-40FFCP PHASE2:Mm9::chr19:4876870..4876880,-#_6e4fff2082769cadc934a1cdbfa7a6eap@chr19:4876870..4876880, -
1.15e-39FFCP PHASE2:Mm9::chr16:24096441..24096449,+#_81424880b6e7154b72cce0c27e7ae20ap@chr16:24096441..24096449, +
1.15e-39FFCP PHASE1:Mm9::chr16:24096441..24096449,+#_81424880b6e7154b72cce0c27e7ae20ap@chr16:24096441..24096449, +
1.15e-39FFCP PHASE2:Mm9::chr6:4490674..4490679,+#_81424880b6e7154b72cce0c27e7ae20a+, p@chr6:4490674..4490679
1.15e-39FFCP PHASE2:Mm9::chr1:174140324..174140335,-#_81424880b6e7154b72cce0c27e7ae20ap@chr1:174140324..174140335, -
1.15e-39FFCP PHASE1:Mm9::chr11:67063327..67063335,+#_81424880b6e7154b72cce0c27e7ae20ap@chr11:67063327..67063335, +
1.15e-39FFCP PHASE1:Mm9::chr1:174140324..174140335,-#_81424880b6e7154b72cce0c27e7ae20ap@chr1:174140324..174140335, -
1.15e-39FFCP PHASE1:Mm9::chr6:4490674..4490679,+#_81424880b6e7154b72cce0c27e7ae20ap@chr6:4490674..4490679, +
1.15e-39FFCP PHASE2:Mm9::chr11:67063327..67063335,+#_81424880b6e7154b72cce0c27e7ae20ap@chr11:67063327..67063335, +
1.55e-39FFCP PHASE2:Mm9::chr1:174143249..174143260,-#_fa262664c952bc42cc901ee03653005bp@chr1:174143249..174143260, -
1.55e-39FFCP PHASE1:Mm9::chr1:174143249..174143260,-#_fa262664c952bc42cc901ee03653005bp@chr1:174143249..174143260, -
3.03e-39FFCP PHASE1:Mm9::chr6:51525869..51525891,+#_23fcd27be1aef58220a1a5a3103caea2p@chr6:51525869..51525891, +
3.03e-39FFCP PHASE2:Mm9::chr6:51525869..51525891,+#_23fcd27be1aef58220a1a5a3103caea2p@chr6:51525869..51525891, +
9.31e-39FFCP PHASE2:Mm9::chr11:102130083..102130092,+#_36131a2a57da13640b856eaa7f6c3f26p3@Asb16
9.31e-39FFCP PHASE1:Mm9::chr11:102130083..102130092,+#_36131a2a57da13640b856eaa7f6c3f26p3@Asb16
2.41e-35FFCP PHASE2:Mm9::chr7:133604286..133604297,-#_fbec8f43b22e1f371532151a93fa3b83p@chr7:133604286..133604297, -
2.41e-35FFCP PHASE1:Mm9::chr7:133604286..133604297,-#_fbec8f43b22e1f371532151a93fa3b83p@chr7:133604286..133604297, -
2.95e-35FFCP PHASE2:Mm9::chr4:138365748..138365759,-#_316c8ce50d393d8def1fbd046026abd6p5@Pla2g5
2.95e-35FFCP PHASE1:Mm9::chr4:138365748..138365759,-#_316c8ce50d393d8def1fbd046026abd6p5@Pla2g5
9.53e-34FFCP PHASE2:Mm9::chr8:74049600..74049612,-#_006ca76b99a81b897db9037dee3c6ccep2@uc009mdq.1
9.53e-34FFCP PHASE1:Mm9::chr8:74049600..74049612,-#_006ca76b99a81b897db9037dee3c6ccep2@uc009mdq.1
1.23e-33FFCP PHASE2:Mm9::chr2:164773241..164773248,+#_d760c078850abc92a7bac18ce02137cbp3@Mmp9
1.23e-33FFCP PHASE1:Mm9::chr2:164773241..164773248,+#_d760c078850abc92a7bac18ce02137cbp3@Mmp9
1.58e-33FFCP PHASE2:Mm9::chr7:3567707..3567718,-#_df31328948c81d2a8b03c91e7ce00a92p2@Oscar
1.58e-33FFCP PHASE1:Mm9::chr1:166815111..166815121,-#_df31328948c81d2a8b03c91e7ce00a92p@chr1:166815111..166815121, -
1.58e-33FFCP PHASE2:Mm9::chr1:166815111..166815121,-#_df31328948c81d2a8b03c91e7ce00a92p@chr1:166815111..166815121, -
1.58e-33FFCP PHASE1:Mm9::chr7:3567707..3567718,-#_df31328948c81d2a8b03c91e7ce00a92p2@Oscar
2.04e-33FFCP PHASE2:Mm9::chr9:70799951..70799962,-#_2db033de9cbf1c7281d814a05278738bp4@Lipc
2.04e-33FFCP PHASE1:Mm9::chr11:75409652..75409664,+#_2db033de9cbf1c7281d814a05278738b+, p@chr11:75409652..75409664
2.04e-33FFCP PHASE1:Mm9::chr9:70799951..70799962,-#_2db033de9cbf1c7281d814a05278738bp4@Lipc
2.04e-33FFCP PHASE2:Mm9::chr11:75409652..75409664,+#_2db033de9cbf1c7281d814a05278738bp@chr11:75409652..75409664, +
3.38e-33FFCP PHASE1:Mm9::chr15:102196702..102196713,-#_4890f2c499749cb6cff4c3d3d4f28153p6@Sp7
3.38e-33FFCP PHASE2:Mm9::chr15:102196702..102196713,-#_4890f2c499749cb6cff4c3d3d4f28153p6@Sp7
7.17e-33FFCP PHASE2:Mm9::chr8:126415826..126415839,+#_71d314c7f415f27acc09589e22c0cedap@chr8:126415826..126415839, +
7.17e-33FFCP PHASE1:Mm9::chr18:76271498..76271508,+#_71d314c7f415f27acc09589e22c0ceda+, p@chr18:76271498..76271508
7.17e-33FFCP PHASE1:Mm9::chr8:126415826..126415839,+#_71d314c7f415f27acc09589e22c0cedap@chr8:126415826..126415839, +
7.17e-33FFCP PHASE2:Mm9::chr18:76271498..76271508,+#_71d314c7f415f27acc09589e22c0cedap@chr18:76271498..76271508, +
2.67e-30FFCP PHASE2:Mm9::chr2:32482387..32482399,+#_4dd825b33f81688f1a9bd348d996629bp@chr2:32482387..32482399, +
2.67e-30FFCP PHASE1:Mm9::chr2:32482387..32482399,+#_4dd825b33f81688f1a9bd348d996629bp@chr2:32482387..32482399, +
1.1e-29FFCP PHASE1:Mm9::chr12:70396969..70396979,+#_239c816f2675feeabe6e55cd16b79276p@chr12:70396969..70396979, +
1.1e-29FFCP PHASE2:Mm9::chr12:70396969..70396979,+#_239c816f2675feeabe6e55cd16b79276p@chr12:70396969..70396979, +
1.1e-29FFCP PHASE1:Mm9::chr15:58649683..58649688,-#_239c816f2675feeabe6e55cd16b79276p@chr15:58649683..58649688, -
1.1e-29FFCP PHASE2:Mm9::chr15:58649683..58649688,-#_239c816f2675feeabe6e55cd16b79276p@chr15:58649683..58649688, -
1.46e-29FFCP PHASE1:Mm9::chr7:133590998..133591009,-#_5ae1f2d01e1b3a8c50eb7fbcaff73eeep@chr7:133590998..133591009, -
1.46e-29FFCP PHASE2:Mm9::chr7:133590998..133591009,-#_5ae1f2d01e1b3a8c50eb7fbcaff73eeep@chr7:133590998..133591009, -
1.73e-29FFCP PHASE2:Mm9::chr18:60751417..60751432,-#_84f37a654ca620b2605e950009e87d75p2@Myoz3
1.73e-29FFCP PHASE1:Mm9::chr18:60751417..60751432,-#_84f37a654ca620b2605e950009e87d75p2@Myoz3
2.42e-29FFCP PHASE1:Mm9::chr11:67051354..67051366,+#_d57509211e1c6e1c0d3aa3bdd1875c81p2@Myh4
2.42e-29FFCP PHASE2:Mm9::chr11:67051354..67051366,+#_d57509211e1c6e1c0d3aa3bdd1875c81p2@Myh4
7.46e-29FFCP PHASE1:Mm9::chr1:57155729..57155740,-#_afcd807306984bb0bcf1ea163ac8e6c0p@chr1:57155729..57155740, -
7.46e-29FFCP PHASE2:Mm9::chr1:57155729..57155740,-#_afcd807306984bb0bcf1ea163ac8e6c0-, p@chr1:57155729..57155740
9.26e-29FFCP PHASE2:Mm9::chr11:67056544..67056589,-#_90bad6c13934500bc2156a2b7d8acda2-, p@chr11:67056544..67056589
9.26e-29FFCP PHASE1:Mm9::chr11:67056544..67056589,-#_90bad6c13934500bc2156a2b7d8acda2-, p@chr11:67056544..67056589
9.26e-29FFCP PHASE2:Mm9::chr4:43597258..43597265,-#_90bad6c13934500bc2156a2b7d8acda2p1@Msmp
9.26e-29FFCP PHASE1:Mm9::chr4:43597258..43597265,-#_90bad6c13934500bc2156a2b7d8acda2p1@Msmp
1.15e-28FFCP PHASE1:Mm9::chrY:2858251..2858257,+#_84dce02ef6637a0c86340bf13cd081f0p@chrY:2858251..2858257, +
1.15e-28FFCP PHASE1:Mm9::chr6:90552017..90552024,+#_84dce02ef6637a0c86340bf13cd081f0p@chr6:90552017..90552024, +
1.15e-28FFCP PHASE2:Mm9::chr6:90552017..90552024,+#_84dce02ef6637a0c86340bf13cd081f0p@chr6:90552017..90552024, +
1.15e-28FFCP PHASE2:Mm9::chrY:2858251..2858257,+#_84dce02ef6637a0c86340bf13cd081f0p@chrY:2858251..2858257, +
1.43e-28FFCP PHASE1:Mm9::chr6:34436258..34436292,+#_d890dc053b842530871bc1facf821ad6p@chr6:34436258..34436292, +
1.43e-28FFCP PHASE2:Mm9::chr6:34436258..34436292,+#_d890dc053b842530871bc1facf821ad6p@chr6:34436258..34436292, +
2.2e-28FFCP PHASE1:Mm9::chr11:67069796..67069817,-#_4c2d89969bbf040657b00de1ae22471bp@chr11:67069796..67069817, -
2.2e-28FFCP PHASE2:Mm9::chr11:67069796..67069817,-#_4c2d89969bbf040657b00de1ae22471bp@chr11:67069796..67069817, -
2.72e-28FFCP PHASE1:Mm9::chr8:107702369..107702386,+#_9afe6015f5b1c94b9c5abf1af1b13e75p@chr8:107702369..107702386, +
2.72e-28FFCP PHASE2:Mm9::chr8:107702369..107702386,+#_9afe6015f5b1c94b9c5abf1af1b13e75p@chr8:107702369..107702386, +
3.45e-28FFCP PHASE1:Mm9::chr18:78254135..78254146,-#_37e64721bc9df4940a562b632ed0b849p1@Siglec15
3.45e-28FFCP PHASE2:Mm9::chr18:78254135..78254146,-#_37e64721bc9df4940a562b632ed0b849p1@Siglec15
6.5e-28FFCP PHASE2:Mm9::chr7:133591490..133591500,-#_0490cb81098340e2ba6f1a7709aeb29dp6@Atp2a1
6.5e-28FFCP PHASE1:Mm9::chr7:133591490..133591500,-#_0490cb81098340e2ba6f1a7709aeb29dp6@Atp2a1
8.9e-28FFCP PHASE1:Mm9::chr7:133591156..133591165,-#_2e801d430fd8815149cad1e40aeb864ap7@Atp2a1
8.9e-28FFCP PHASE2:Mm9::chr7:133591156..133591165,-#_2e801d430fd8815149cad1e40aeb864ap7@Atp2a1
1.42e-27FFCP PHASE1:Mm9::chr7:133600635..133600663,+#_c652ed96e6e64beaf3c456e910d91e7fp@chr7:133600635..133600663, +
1.42e-27FFCP PHASE1:Mm9::chr7:133592162..133592188,-#_c652ed96e6e64beaf3c456e910d91e7fp@chr7:133592162..133592188, -
1.42e-27FFCP PHASE2:Mm9::chr7:133600635..133600663,+#_c652ed96e6e64beaf3c456e910d91e7fp@chr7:133600635..133600663, +
1.42e-27FFCP PHASE2:Mm9::chr7:133592162..133592188,-#_c652ed96e6e64beaf3c456e910d91e7fp@chr7:133592162..133592188, -
6.75e-27FFCP PHASE2:Mm9::chr11:94837662..94837673,-#_2a7f67133891359fa9c69440a6c550b8p4@Sgca
6.75e-27FFCP PHASE1:Mm9::chr11:94837662..94837673,-#_2a7f67133891359fa9c69440a6c550b8p4@Sgca
1.66e-26FFCP PHASE1:Mm9::chr5:104754379..104754387,+#_8d3ff3c72d556216e46229e338d7161fp1@Mepe
1.66e-26FFCP PHASE2:Mm9::chr5:104754379..104754387,+#_8d3ff3c72d556216e46229e338d7161fp1@Mepe
3.47e-26FFCP PHASE2:Mm9::chr16:32400888..32400899,+#_d28b6346c2fa2136e09ae9a26c6f1d86p2@Tm4sf19
3.47e-26FFCP PHASE2:Mm9::chr12:81581216..81581231,+#_d28b6346c2fa2136e09ae9a26c6f1d86p@chr12:81581216..81581231, +
3.47e-26FFCP PHASE1:Mm9::chr16:32400888..32400899,+#_d28b6346c2fa2136e09ae9a26c6f1d86p2@Tm4sf19
3.47e-26FFCP PHASE1:Mm9::chr12:81581216..81581231,+#_d28b6346c2fa2136e09ae9a26c6f1d86p@chr12:81581216..81581231, +
1.12e-25FFCP PHASE1:Mm9::chr15:97806574..97806585,-#_d3b278bcd9ab5de9608bacfc2521f98ap@chr15:97806574..97806585, -
1.12e-25FFCP PHASE2:Mm9::chr17:34176173..34176200,+#_d3b278bcd9ab5de9608bacfc2521f98ap5@Col11a2
1.12e-25FFCP PHASE1:Mm9::chr17:34176173..34176200,+#_d3b278bcd9ab5de9608bacfc2521f98ap5@Col11a2
1.12e-25FFCP PHASE2:Mm9::chr15:97806574..97806585,-#_d3b278bcd9ab5de9608bacfc2521f98ap@chr15:97806574..97806585, -
1.36e-25FFCP PHASE2:Mm9::chr2:180890942..180890956,-#_d59bc0ac3050836f8dfa6708aa6cec6cp@chr2:180890942..180890956, -
1.36e-25FFCP PHASE1:Mm9::chr18:78254174..78254185,-#_d59bc0ac3050836f8dfa6708aa6cec6cp2@Siglec15