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UBERON:0002435

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Name:striatum
Namespace:FANTOM
Definition:"A region of the forebrain consisting of the caudate nucleus, putamen and fundus striati.[GO]." [GOC:jl, Wikipedia:Striatum]
Xrefs:
links:

ABA:STR
BM:N
BTO:0000418
EFO:0000109
EMAPA:17549
FMA:77618
FMA:83683
[1]
[ 200px-BrainCaudatePutamen.svg.png 200px-BrainCaudatePutamen.svg.png]
MA:0000891
MESH:A.08.186.211.730.885.105.487.550
ncithesaurus:Striatum

NIF_GrossAnatomy:birnlex_1672
Synonyms: "corpus striatum" RELATED [MA:0000891]
"neostriatum" EXACT [GO:0021756, Wikipedia:Striatum]
"striate nucleus" EXACT [GO:0021756, Wikipedia:Striatum]
Comments:AO notes: FMA divides striatum of neuraxis into 4, neostriatum is seperate class. In NIF these are synonyms. TODO - check striatum vs corpus striatum see http://en.wikipedia.org/wiki/Striatum#History. Check caudoputamen
Alt_id: UBERON:MA_0000891-FMA_77618
Subset: uberon_slim

Ontology association
Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.

link to ontology dataset
data


Parents

is_a:UBERON:0011300(gray matter of telencephalon)
part_of:UBERON:0000204(ventral part of telencephalon),UBERON:0000369(corpus striatum),UBERON:0002420(basal ganglion),UBERON:0006098(basal nuclear complex)



Children

part of:UBERON:0001873 (caudate nucleus),UBERON:0001874 (putamen),CL:0002613 (striatum neuron),UBERON:0005382 (dorsal striatum),UBERON:0005403 (ventral striatum)

Ontology Tree: Loaded from BioPortal


FF samples
It includes FANTOM5 samples that overlay the Uberon ontology


Human (Homo sapiens)

... further results Mouse (Mus musculus)

... further results


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0002435 (striatum), sorted by p-values
Analyst: Hideya Kawaji

link to source dataset
human : data
mouse : data


P-valueFFCPShort description
2.57e-195FFCP PHASE1:Hg19::chr12:6031299..6031315,-#_e77ddbee804b5c08cb31b2b6d890004ep@chr12:6031299..6031315, -
2.57e-195FFCP PHASE1:Hg19::chr13:112726433..112726446,+#_e77ddbee804b5c08cb31b2b6d890004ep@chr13:112726433..112726446, +
2.57e-195FFCP PHASE1:Hg19::chr14:78638610..78638621,+#_e77ddbee804b5c08cb31b2b6d890004ep@chr14:78638610..78638621, +
2.57e-195FFCP PHASE1:Hg19::chr18:47967428..47967437,-#_e77ddbee804b5c08cb31b2b6d890004ep@chr18:47967428..47967437, -
2.57e-195FFCP PHASE1:Hg19::chr1:31352916..31352926,-#_e77ddbee804b5c08cb31b2b6d890004ep@chr1:31352916..31352926, -
2.57e-195FFCP PHASE2:Hg19::chr12:6031299..6031315,-#_e77ddbee804b5c08cb31b2b6d890004ep@chr12:6031299..6031315, -
2.57e-195FFCP PHASE2:Hg19::chr18:47967428..47967437,-#_e77ddbee804b5c08cb31b2b6d890004ep@chr18:47967428..47967437, -
2.57e-195FFCP PHASE2:Hg19::chr1:31352916..31352926,-#_e77ddbee804b5c08cb31b2b6d890004ep@chr1:31352916..31352926, -
2.57e-195FFCP PHASE2:Hg19::chr13:112726433..112726446,+#_e77ddbee804b5c08cb31b2b6d890004ep@chr13:112726433..112726446, +
2.57e-195FFCP PHASE2:Hg19::chr2:152828264..152828299,-#_e77ddbee804b5c08cb31b2b6d890004ep@chr2:152828264..152828299, -
2.57e-195FFCP PHASE1:Hg19::chr2:152828264..152828299,-#_e77ddbee804b5c08cb31b2b6d890004ep@chr2:152828264..152828299, -
2.57e-195FFCP PHASE2:Hg19::chr14:78638610..78638621,+#_e77ddbee804b5c08cb31b2b6d890004ep@chr14:78638610..78638621, +
6.72e-157FFCP PHASE2:Hg19::chr15:35546024..35546035,-#_181d5d015df4ea1866b9bfc0c74d828fp@chr15:35546024..35546035, -
6.72e-157FFCP PHASE2:Hg19::chr3:57807798..57807809,+#_181d5d015df4ea1866b9bfc0c74d828fp@chr3:57807798..57807809, +
6.72e-157FFCP PHASE2:Hg19::chr2:3853961..3853984,+#_181d5d015df4ea1866b9bfc0c74d828fp@chr2:3853961..3853984, +
6.72e-157FFCP PHASE1:Hg19::chr10:97261874..97261887,-#_181d5d015df4ea1866b9bfc0c74d828fp@chr10:97261874..97261887, -
6.72e-157FFCP PHASE1:Hg19::chr15:35546024..35546035,-#_181d5d015df4ea1866b9bfc0c74d828fp@chr15:35546024..35546035, -
6.72e-157FFCP PHASE1:Hg19::chr17:19390211..19390223,+#_181d5d015df4ea1866b9bfc0c74d828fp@chr17:19390211..19390223, +
6.72e-157FFCP PHASE1:Hg19::chr20:9496091..9496106,+#_181d5d015df4ea1866b9bfc0c74d828fp@chr20:9496091..9496106, +
6.72e-157FFCP PHASE1:Hg19::chr2:127783377..127783391,+#_181d5d015df4ea1866b9bfc0c74d828fp2@BC051739
6.72e-157FFCP PHASE1:Hg19::chr2:3853961..3853984,+#_181d5d015df4ea1866b9bfc0c74d828fp@chr2:3853961..3853984, +
6.72e-157FFCP PHASE1:Hg19::chr3:57807798..57807809,+#_181d5d015df4ea1866b9bfc0c74d828f+, p@chr3:57807798..57807809
6.72e-157FFCP PHASE2:Hg19::chr20:9496091..9496106,+#_181d5d015df4ea1866b9bfc0c74d828fp@chr20:9496091..9496106, +
6.72e-157FFCP PHASE2:Hg19::chr2:127783377..127783391,+#_181d5d015df4ea1866b9bfc0c74d828fp2@BC051739
6.72e-157FFCP PHASE2:Hg19::chr10:97261874..97261887,-#_181d5d015df4ea1866b9bfc0c74d828fp@chr10:97261874..97261887, -
6.72e-157FFCP PHASE2:Hg19::chr17:19390211..19390223,+#_181d5d015df4ea1866b9bfc0c74d828fp@chr17:19390211..19390223, +
1.5e-156FFCP PHASE2:Hg19::chr3:156008856..156008863,+#_1ee3adcdbf68bfd6e4b8fbc63a4f3d16p23@KCNAB1
1.5e-156FFCP PHASE1:Hg19::chr3:156008856..156008863,+#_1ee3adcdbf68bfd6e4b8fbc63a4f3d16p23@KCNAB1
3.35e-156FFCP PHASE1:Hg19::chr14:74893023..74893028,-#_db5663c280d001f644ceec308c756788p6@SYNDIG1L
3.35e-156FFCP PHASE2:Hg19::chr14:74893023..74893028,-#_db5663c280d001f644ceec308c756788p6@SYNDIG1L
6.94e-147FFCP PHASE2:Hg19::chr15:37777334..37777345,-#_bc39c24b917648d264cc8e3f4876e93dp@chr15:37777334..37777345, -
6.94e-147FFCP PHASE2:Hg19::chr3:63542313..63542321,+#_bc39c24b917648d264cc8e3f4876e93d+, p@chr3:63542313..63542321
6.94e-147FFCP PHASE1:Hg19::chrX:102663083..102663098,+#_bc39c24b917648d264cc8e3f4876e93dp@chrX:102663083..102663098, +
6.94e-147FFCP PHASE1:Hg19::chr11:47617035..47617045,-#_bc39c24b917648d264cc8e3f4876e93dp@chr11:47617035..47617045, -
6.94e-147FFCP PHASE1:Hg19::chr12:51984146..51984157,+#_bc39c24b917648d264cc8e3f4876e93dp11@SCN8A
6.94e-147FFCP PHASE1:Hg19::chr13:42614200..42614212,+#_bc39c24b917648d264cc8e3f4876e93dp2@DGKH
6.94e-147FFCP PHASE1:Hg19::chr15:37777334..37777345,-#_bc39c24b917648d264cc8e3f4876e93dp@chr15:37777334..37777345, -
6.94e-147FFCP PHASE1:Hg19::chr3:63542313..63542321,+#_bc39c24b917648d264cc8e3f4876e93dp@chr3:63542313..63542321, +
6.94e-147FFCP PHASE1:Hg19::chr4:71945904..71945922,+#_bc39c24b917648d264cc8e3f4876e93dp@chr4:71945904..71945922, +
6.94e-147FFCP PHASE1:Hg19::chr5:119669209..119669216,-#_bc39c24b917648d264cc8e3f4876e93dp5@ENST00000514240
6.94e-147FFCP PHASE1:Hg19::chr5:35195732..35195740,-#_bc39c24b917648d264cc8e3f4876e93dp22@PRLR
6.94e-147FFCP PHASE2:Hg19::chr12:51984146..51984157,+#_bc39c24b917648d264cc8e3f4876e93dp11@SCN8A
6.94e-147FFCP PHASE2:Hg19::chr4:71945904..71945922,+#_bc39c24b917648d264cc8e3f4876e93dp@chr4:71945904..71945922, +
6.94e-147FFCP PHASE2:Hg19::chr5:119669209..119669216,-#_bc39c24b917648d264cc8e3f4876e93dp5@ENST00000514240
6.94e-147FFCP PHASE2:Hg19::chr8:115354253..115354290,+#_bc39c24b917648d264cc8e3f4876e93dp@chr8:115354253..115354290, +
6.94e-147FFCP PHASE2:Hg19::chr5:35195732..35195740,-#_bc39c24b917648d264cc8e3f4876e93dp22@PRLR
6.94e-147FFCP PHASE2:Hg19::chr17:7271778..7271784,+#_bc39c24b917648d264cc8e3f4876e93dp@chr17:7271778..7271784, +
6.94e-147FFCP PHASE2:Hg19::chr18:11752139..11752148,+#_bc39c24b917648d264cc8e3f4876e93dp27@GNAL
6.94e-147FFCP PHASE2:Hg19::chr18:47967443..47967452,-#_bc39c24b917648d264cc8e3f4876e93dp@chr18:47967443..47967452, -
6.94e-147FFCP PHASE2:Hg19::chr18:54898506..54898515,+#_bc39c24b917648d264cc8e3f4876e93dp@chr18:54898506..54898515, +
6.94e-147FFCP PHASE1:Hg19::chr8:115354253..115354290,+#_bc39c24b917648d264cc8e3f4876e93dp@chr8:115354253..115354290, +
6.94e-147FFCP PHASE2:Hg19::chr13:42614200..42614212,+#_bc39c24b917648d264cc8e3f4876e93dp2@DGKH
6.94e-147FFCP PHASE1:Hg19::chr17:7271778..7271784,+#_bc39c24b917648d264cc8e3f4876e93dp@chr17:7271778..7271784, +
6.94e-147FFCP PHASE1:Hg19::chr18:11752139..11752148,+#_bc39c24b917648d264cc8e3f4876e93dp27@GNAL
6.94e-147FFCP PHASE1:Hg19::chr18:47967443..47967452,-#_bc39c24b917648d264cc8e3f4876e93dp@chr18:47967443..47967452, -
6.94e-147FFCP PHASE1:Hg19::chr18:54898506..54898515,+#_bc39c24b917648d264cc8e3f4876e93dp@chr18:54898506..54898515, +
6.94e-147FFCP PHASE2:Hg19::chrX:102663083..102663098,+#_bc39c24b917648d264cc8e3f4876e93dp@chrX:102663083..102663098, +
6.94e-147FFCP PHASE2:Hg19::chr11:47617035..47617045,-#_bc39c24b917648d264cc8e3f4876e93dp@chr11:47617035..47617045, -
2.79e-131FFCP PHASE2:Hg19::chr10:97261796..97261806,-#_2bcb86f7d59fdddfed2a45aeedc7de2ap@chr10:97261796..97261806, -
2.79e-131FFCP PHASE2:Hg19::chr10:97261901..97261919,-#_2bcb86f7d59fdddfed2a45aeedc7de2ap@chr10:97261901..97261919, -
2.79e-131FFCP PHASE2:Hg19::chr11:26497871..26497889,+#_2bcb86f7d59fdddfed2a45aeedc7de2ap@chr11:26497871..26497889, +
2.79e-131FFCP PHASE1:Hg19::chr2:234227370..234227385,+#_2bcb86f7d59fdddfed2a45aeedc7de2ap@chr2:234227370..234227385, +
2.79e-131FFCP PHASE1:Hg19::chr3:63428975..63428978,+#_2bcb86f7d59fdddfed2a45aeedc7de2ap10@SYNPR
2.79e-131FFCP PHASE1:Hg19::chr5:121648127..121648167,-#_2bcb86f7d59fdddfed2a45aeedc7de2ap@chr5:121648127..121648167, -
2.79e-131FFCP PHASE2:Hg19::chr3:63428975..63428978,+#_2bcb86f7d59fdddfed2a45aeedc7de2ap10@SYNPR
2.79e-131FFCP PHASE1:Hg19::chr10:97261796..97261806,-#_2bcb86f7d59fdddfed2a45aeedc7de2ap@chr10:97261796..97261806, -
2.79e-131FFCP PHASE1:Hg19::chr10:97261901..97261919,-#_2bcb86f7d59fdddfed2a45aeedc7de2ap@chr10:97261901..97261919, -
2.79e-131FFCP PHASE1:Hg19::chr11:26497871..26497889,+#_2bcb86f7d59fdddfed2a45aeedc7de2ap@chr11:26497871..26497889, +
2.79e-131FFCP PHASE2:Hg19::chr5:121648127..121648167,-#_2bcb86f7d59fdddfed2a45aeedc7de2ap@chr5:121648127..121648167, -
2.79e-131FFCP PHASE2:Hg19::chr2:234227370..234227385,+#_2bcb86f7d59fdddfed2a45aeedc7de2ap@chr2:234227370..234227385, +
3.91e-131FFCP PHASE1:Hg19::chr7:111424575..111424587,-#_38404cc64a613f888d78255cc237b1a3p9@DOCK4
3.91e-131FFCP PHASE2:Hg19::chr7:111424575..111424587,-#_38404cc64a613f888d78255cc237b1a3p9@DOCK4
3.91e-131FFCP PHASE2:Hg19::chr1:242372439..242372456,+#_38404cc64a613f888d78255cc237b1a3p1@ENST00000421878
3.91e-131FFCP PHASE1:Hg19::chr1:242372439..242372456,+#_38404cc64a613f888d78255cc237b1a3p1@ENST00000421878
5.46e-131FFCP PHASE1:Hg19::chr19:1236637..1236645,-#_835e734955139ad24657c898b3591978p@chr19:1236637..1236645, -
5.46e-131FFCP PHASE2:Hg19::chr2:212989626..212989648,-#_835e734955139ad24657c898b3591978p@chr2:212989626..212989648, -
5.46e-131FFCP PHASE1:Hg19::chr2:212989626..212989648,-#_835e734955139ad24657c898b3591978p@chr2:212989626..212989648, -
5.46e-131FFCP PHASE1:Hg19::chr3:85007662..85007678,+#_835e734955139ad24657c898b3591978p8@CADM2
5.46e-131FFCP PHASE1:Hg19::chr14:101123580..101123593,+#_835e734955139ad24657c898b3591978p1@LINC00523
5.46e-131FFCP PHASE2:Hg19::chr3:85007662..85007678,+#_835e734955139ad24657c898b3591978p8@CADM2
5.46e-131FFCP PHASE2:Hg19::chr19:1236637..1236645,-#_835e734955139ad24657c898b3591978p@chr19:1236637..1236645, -
5.46e-131FFCP PHASE2:Hg19::chr14:101123580..101123593,+#_835e734955139ad24657c898b3591978p1@LINC00523
1.07e-130FFCP PHASE1:Hg19::chr11:26495467..26495474,+#_805e81e57cd019a14706daa7996b8a6fp8@ANO3
1.07e-130FFCP PHASE2:Hg19::chr22:24828830..24828842,+#_805e81e57cd019a14706daa7996b8a6fp14@ADORA2A
1.07e-130FFCP PHASE2:Hg19::chr11:26495467..26495474,+#_805e81e57cd019a14706daa7996b8a6fp8@ANO3
1.07e-130FFCP PHASE1:Hg19::chr22:24828830..24828842,+#_805e81e57cd019a14706daa7996b8a6fp14@ADORA2A
4.07e-130FFCP PHASE2:Hg19::chr16:84027018..84027029,+#_f87e7d893bd48e0daae8d11b0c804980p@chr16:84027018..84027029, +
4.07e-130FFCP PHASE1:Hg19::chr16:84027018..84027029,+#_f87e7d893bd48e0daae8d11b0c804980p@chr16:84027018..84027029, +
5.62e-113FFCP PHASE1:Hg19::chr3:154147920..154147931,-#_fc72d900ffb2942358754cea37d7f65fp3@GPR149
5.62e-113FFCP PHASE2:Hg19::chr13:98995904..98995913,+#_fc72d900ffb2942358754cea37d7f65fp@chr13:98995904..98995913, +
5.62e-113FFCP PHASE2:Hg19::chr3:154147920..154147931,-#_fc72d900ffb2942358754cea37d7f65fp3@GPR149
5.62e-113FFCP PHASE1:Hg19::chr13:98995904..98995913,+#_fc72d900ffb2942358754cea37d7f65fp@chr13:98995904..98995913, +
7.5e-113FFCP PHASE1:Hg19::chr11:80886203..80886231,+#_0a28506f8d847025562ae8386a9a8610p@chr11:80886203..80886231, +
7.5e-113FFCP PHASE1:Hg19::chrX:37765754..37765765,+#_0a28506f8d847025562ae8386a9a8610p11@ENST00000449263
7.5e-113FFCP PHASE2:Hg19::chrX:37765754..37765765,+#_0a28506f8d847025562ae8386a9a8610p11@ENST00000449263
7.5e-113FFCP PHASE1:Hg19::chr6:12890045..12890049,+#_0a28506f8d847025562ae8386a9a8610p@chr6:12890045..12890049, +
7.5e-113FFCP PHASE2:Hg19::chr11:80886203..80886231,+#_0a28506f8d847025562ae8386a9a8610p@chr11:80886203..80886231, +
7.5e-113FFCP PHASE2:Hg19::chr6:12890045..12890049,+#_0a28506f8d847025562ae8386a9a8610p@chr6:12890045..12890049, +
1.0e-112FFCP PHASE2:Hg19::chr2:242171468..242171498,-#_3fc91b4cb23062dbd2bb35f0d554b885p@chr2:242171468..242171498, -
1.0e-112FFCP PHASE2:Hg19::chr2:7112752..7112770,+#_3fc91b4cb23062dbd2bb35f0d554b885p@chr2:7112752..7112770, +