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UBERON:0002514

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Name:intramembranous bone
Namespace:FANTOM
Definition:"Bone tissue forms directly within mesenchyme, and does not replace other tissues[TAO]. Intramembranous ossification is the formation of bone in which osteoblasts secrete a collagen-proteoglycan matrix that binds calcium salts and becomes calcified[GO]. Intramembranous ossification is the way flat bones and the shell of a turtle are formed[GO]. Unlike endochondral ossification, cartilage is not present during intramembranous ossification[WP]." [GO:0001957, Wikipedia:Intramembranous_ossification]
Xrefs:
links:

TAO:0001644

ZFA:0001635
Synonyms: "membrane bone" RELATED [AEO:0000085]
Alt_id: UBERON:MA_0002837-ZFA_0001635

Ontology association
Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.

link to ontology dataset
data


Parents

is_a:UBERON:0001474(bone element)
develops_from:UBERON:0003104(mesenchyme)



Children

is a:UBERON:0002244 (premaxilla),UBERON:0002397 (maxilla)

Ontology Tree: Loaded from BioPortal


FF samples
It includes FANTOM5 samples that overlay the Uberon ontology


Human (Homo sapiens)

  • 10813-111B3 (normal embryonic palatal mesenchymal cell line:HEPM)


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0002514 (intramembranous bone), sorted by p-values
Analyst: Hideya Kawaji

link to source dataset
human : data
mouse : data


P-valueFFCPShort description
5.42e-195FFCP PHASE2:Hg19::chr17:54893192..54893195,-#_a7077f2e3b9fe96fb7dda1d7da71929fp14@C17orf67
5.42e-195FFCP PHASE1:Hg19::chr17:54893192..54893195,-#_a7077f2e3b9fe96fb7dda1d7da71929fp14@C17orf67
9.37e-99FFCP PHASE1:Hg19::chr17:54893292..54893300,-#_eb31da55f19578a6763d1bcaa4f394bep13@C17orf67
9.37e-99FFCP PHASE2:Hg19::chr17:54893213..54893220,-#_eb31da55f19578a6763d1bcaa4f394bep12@C17orf67
9.37e-99FFCP PHASE1:Hg19::chr17:54893213..54893220,-#_eb31da55f19578a6763d1bcaa4f394bep12@C17orf67
9.37e-99FFCP PHASE1:Hg19::chr8:57353655..57353662,-#_eb31da55f19578a6763d1bcaa4f394bep@chr8:57353655..57353662, -
9.37e-99FFCP PHASE2:Hg19::chr17:54893269..54893278,-#_eb31da55f19578a6763d1bcaa4f394bep11@C17orf67
9.37e-99FFCP PHASE2:Hg19::chr8:57353655..57353662,-#_eb31da55f19578a6763d1bcaa4f394bep@chr8:57353655..57353662, -
9.37e-99FFCP PHASE1:Hg19::chr17:54893269..54893278,-#_eb31da55f19578a6763d1bcaa4f394bep11@C17orf67
9.37e-99FFCP PHASE2:Hg19::chr17:54893292..54893300,-#_eb31da55f19578a6763d1bcaa4f394bep13@C17orf67
2.39e-66FFCP PHASE1:Hg19::chr4:151503647..151503656,+#_a96ea19f65b95520c848592d8c3bb6f1p14@MAB21L2
2.39e-66FFCP PHASE2:Hg19::chr4:151503647..151503656,+#_a96ea19f65b95520c848592d8c3bb6f1p14@MAB21L2
2.39e-66FFCP PHASE2:Hg19::chr5:75912402..75912418,-#_a96ea19f65b95520c848592d8c3bb6f1p@chr5:75912402..75912418, -
2.39e-66FFCP PHASE1:Hg19::chr5:75912402..75912418,-#_a96ea19f65b95520c848592d8c3bb6f1p@chr5:75912402..75912418, -
4.66e-66FFCP PHASE1:Hg19::chr4:151505582..151505614,+#_cb493a05078c2cabbd3035b627db98d2p@chr4:151505582..151505614, +
4.66e-66FFCP PHASE2:Hg19::chr4:151505582..151505614,+#_cb493a05078c2cabbd3035b627db98d2p@chr4:151505582..151505614, +
1.46e-50FFCP PHASE2:Hg19::chr3:157823323..157823328,+#_5e73d951729c6885d520ff45ac1009f3p17@RSRC1
1.46e-50FFCP PHASE1:Hg19::chr8:57354278..57354286,+#_5e73d951729c6885d520ff45ac1009f3p@chr8:57354278..57354286, +
1.46e-50FFCP PHASE2:Hg19::chr17:54893196..54893207,-#_5e73d951729c6885d520ff45ac1009f3p9@C17orf67
1.46e-50FFCP PHASE1:Hg19::chr3:157823323..157823328,+#_5e73d951729c6885d520ff45ac1009f3p17@RSRC1
1.46e-50FFCP PHASE2:Hg19::chr8:57354278..57354286,+#_5e73d951729c6885d520ff45ac1009f3+, p@chr8:57354278..57354286
1.46e-50FFCP PHASE1:Hg19::chr17:54893196..54893207,-#_5e73d951729c6885d520ff45ac1009f3p9@C17orf67
2.42e-50FFCP PHASE1:Hg19::chr8:57802672..57802682,-#_5cae14decd4efe8a57e1035f2d35794fp@chr8:57802672..57802682, -
2.42e-50FFCP PHASE2:Hg19::chr8:57802672..57802682,-#_5cae14decd4efe8a57e1035f2d35794fp@chr8:57802672..57802682, -
3.99e-50FFCP PHASE2:Hg19::chr17:76930661..76930674,+#_57cc08dd1bd9389f0404c280c6de9969p1@AK123925
3.99e-50FFCP PHASE2:Hg19::chr5:75913767..75913778,-#_57cc08dd1bd9389f0404c280c6de9969p@chr5:75913767..75913778, -
3.99e-50FFCP PHASE1:Hg19::chr5:75913767..75913778,-#_57cc08dd1bd9389f0404c280c6de9969p@chr5:75913767..75913778, -
3.99e-50FFCP PHASE1:Hg19::chr17:76930661..76930674,+#_57cc08dd1bd9389f0404c280c6de9969p1@AK123925
3.99e-50FFCP PHASE2:Hg19::chr12:85673913..85673919,+#_57cc08dd1bd9389f0404c280c6de9969p7@ALX1
3.99e-50FFCP PHASE1:Hg19::chr12:85673913..85673919,+#_57cc08dd1bd9389f0404c280c6de9969p7@ALX1
6.58e-50FFCP PHASE1:Hg19::chr2:33519090..33519092,+#_89be10955720bd3b74a0855a7353724ep@chr2:33519090..33519092, +
6.58e-50FFCP PHASE2:Hg19::chr2:33519090..33519092,+#_89be10955720bd3b74a0855a7353724ep@chr2:33519090..33519092, +
6.58e-50FFCP PHASE2:Hg19::chr13:28961248..28961262,-#_89be10955720bd3b74a0855a7353724ep23@FLT1
6.58e-50FFCP PHASE1:Hg19::chr13:28961248..28961262,-#_89be10955720bd3b74a0855a7353724ep23@FLT1
6.62e-41FFCP PHASE2:Hg19::chr8:57353666..57353675,-#_cf57feb5c470e4987c159b54e864803ep@chr8:57353666..57353675, -
6.62e-41FFCP PHASE1:Hg19::chr8:57354143..57354152,+#_cf57feb5c470e4987c159b54e864803ep@chr8:57354143..57354152, +
6.62e-41FFCP PHASE1:Hg19::chr8:57353779..57353790,-#_cf57feb5c470e4987c159b54e864803ep@chr8:57353779..57353790, -
6.62e-41FFCP PHASE2:Hg19::chr8:57354143..57354152,+#_cf57feb5c470e4987c159b54e864803ep@chr8:57354143..57354152, +
6.62e-41FFCP PHASE2:Hg19::chr8:57353779..57353790,-#_cf57feb5c470e4987c159b54e864803e-, p@chr8:57353779..57353790
6.62e-41FFCP PHASE1:Hg19::chr8:57353666..57353675,-#_cf57feb5c470e4987c159b54e864803ep@chr8:57353666..57353675, -
1.48e-40FFCP PHASE1:Hg19::chr1:75600308..75600316,+#_db72ca8556297fa2ad8d17684d3beb92p8@LHX8
1.48e-40FFCP PHASE2:Hg19::chr1:6615391..6615401,+#_db72ca8556297fa2ad8d17684d3beb92p2@TAS1R1
1.48e-40FFCP PHASE1:Hg19::chr20:49253452..49253461,-#_db72ca8556297fa2ad8d17684d3beb92p12@FAM65C
1.48e-40FFCP PHASE2:Hg19::chr1:75600308..75600316,+#_db72ca8556297fa2ad8d17684d3beb92p8@LHX8
1.48e-40FFCP PHASE1:Hg19::chr1:6615391..6615401,+#_db72ca8556297fa2ad8d17684d3beb92p2@TAS1R1
1.48e-40FFCP PHASE2:Hg19::chr20:49253452..49253461,-#_db72ca8556297fa2ad8d17684d3beb92p12@FAM65C
2.21e-40FFCP PHASE2:Hg19::chr16:67687543..67687559,-#_a883ebc33d2b51e0ab1ed7266f6bbf0ap@chr16:67687543..67687559, -
2.21e-40FFCP PHASE1:Hg19::chr16:67687543..67687559,-#_a883ebc33d2b51e0ab1ed7266f6bbf0ap@chr16:67687543..67687559, -
2.21e-40FFCP PHASE2:Hg19::chr5:75912831..75912842,-#_a883ebc33d2b51e0ab1ed7266f6bbf0ap@chr5:75912831..75912842, -
2.21e-40FFCP PHASE1:Hg19::chr5:75912831..75912842,-#_a883ebc33d2b51e0ab1ed7266f6bbf0ap@chr5:75912831..75912842, -
3.3e-40FFCP PHASE1:Hg19::chr6:46190219..46190230,-#_7aabaef326eb6fb2acce9bcf9b655edep@chr6:46190219..46190230, -
3.3e-40FFCP PHASE1:Hg19::chr9:125165007..125165016,+#_7aabaef326eb6fb2acce9bcf9b655edep@chr9:125165007..125165016, +
3.3e-40FFCP PHASE2:Hg19::chr6:46190219..46190230,-#_7aabaef326eb6fb2acce9bcf9b655edep@chr6:46190219..46190230, -
3.3e-40FFCP PHASE2:Hg19::chr9:125165007..125165016,+#_7aabaef326eb6fb2acce9bcf9b655edep@chr9:125165007..125165016, +
1.84e-34FFCP PHASE1:Hg19::chr10:15760985..15760992,-#_18c06f93c83199f42eb02ad962ea0dcfp@chr10:15760985..15760992, -
1.84e-34FFCP PHASE1:Hg19::chr8:57359557..57359570,-#_18c06f93c83199f42eb02ad962ea0dcfp5@PENK
1.84e-34FFCP PHASE2:Hg19::chr8:57359557..57359570,-#_18c06f93c83199f42eb02ad962ea0dcfp5@PENK
1.84e-34FFCP PHASE2:Hg19::chr4:8594472..8594473,+#_18c06f93c83199f42eb02ad962ea0dcfp4@CPZ
1.84e-34FFCP PHASE2:Hg19::chr10:15760985..15760992,-#_18c06f93c83199f42eb02ad962ea0dcfp@chr10:15760985..15760992, -
1.84e-34FFCP PHASE1:Hg19::chr4:8594472..8594473,+#_18c06f93c83199f42eb02ad962ea0dcfp4@CPZ
2.58e-34FFCP PHASE1:Hg19::chr14:61125018..61125037,-#_54143d7fccfeef8ef10ab96783615919p9@SIX1
2.58e-34FFCP PHASE2:Hg19::chr14:61125018..61125037,-#_54143d7fccfeef8ef10ab96783615919p9@SIX1
5.05e-34FFCP PHASE1:Hg19::chr6:134327986..134327991,-#_7e1214622e3b5170151fe231399cbab4p@chr6:134327986..134327991, -
5.05e-34FFCP PHASE2:Hg19::chr6:134327986..134327991,-#_7e1214622e3b5170151fe231399cbab4p@chr6:134327986..134327991, -
7.06e-34FFCP PHASE2:Hg19::chr13:58291223..58291226,+#_bb4754e90212e9fee78c437100d49853p@chr13:58291223..58291226, +
7.06e-34FFCP PHASE1:Hg19::chr8:57353676..57353688,-#_bb4754e90212e9fee78c437100d49853-, p@chr8:57353676..57353688
7.06e-34FFCP PHASE2:Hg19::chr8:57353676..57353688,-#_bb4754e90212e9fee78c437100d49853p@chr8:57353676..57353688, -
7.06e-34FFCP PHASE1:Hg19::chr13:58291223..58291226,+#_bb4754e90212e9fee78c437100d49853p@chr13:58291223..58291226, +
9.85e-34FFCP PHASE2:Hg19::chr5:127873659..127873667,-#_0d3fd292adef110f2997daa97721291cp12@FBN2
9.85e-34FFCP PHASE2:Hg19::chrX:133792540..133792551,-#_0d3fd292adef110f2997daa97721291cp4@PLAC1
9.85e-34FFCP PHASE2:Hg19::chr5:19721484..19721507,-#_0d3fd292adef110f2997daa97721291c-, p@chr5:19721484..19721507
9.85e-34FFCP PHASE1:Hg19::chrX:133792540..133792551,-#_0d3fd292adef110f2997daa97721291cp4@PLAC1
9.85e-34FFCP PHASE1:Hg19::chr5:127873659..127873667,-#_0d3fd292adef110f2997daa97721291cp12@FBN2
9.85e-34FFCP PHASE1:Hg19::chr5:19721484..19721507,-#_0d3fd292adef110f2997daa97721291cp@chr5:19721484..19721507, -
7.48e-30FFCP PHASE2:Hg19::chr8:57354360..57354367,+#_3c47ba577cef5d986d2c41fa5bbb52eb+, p@chr8:57354360..57354367
7.48e-30FFCP PHASE1:Hg19::chr8:57353982..57353991,-#_3c47ba577cef5d986d2c41fa5bbb52eb-, p@chr8:57353982..57353991
7.48e-30FFCP PHASE2:Hg19::chr8:57353982..57353991,-#_3c47ba577cef5d986d2c41fa5bbb52ebp@chr8:57353982..57353991, -
7.48e-30FFCP PHASE1:Hg19::chr8:57353804..57353821,-#_3c47ba577cef5d986d2c41fa5bbb52ebp@chr8:57353804..57353821, -
7.48e-30FFCP PHASE2:Hg19::chr8:57353804..57353821,-#_3c47ba577cef5d986d2c41fa5bbb52ebp@chr8:57353804..57353821, -
7.48e-30FFCP PHASE1:Hg19::chr8:57354360..57354367,+#_3c47ba577cef5d986d2c41fa5bbb52ebp@chr8:57354360..57354367, +
9.99e-30FFCP PHASE1:Hg19::chr3:157824322..157824334,-#_28f8408f4e0357dce981f10d46855b13p7@SHOX2
9.99e-30FFCP PHASE2:Hg19::chr3:157824322..157824334,-#_28f8408f4e0357dce981f10d46855b13p7@SHOX2
9.99e-30FFCP PHASE2:Hg19::chr10:15762107..15762114,-#_28f8408f4e0357dce981f10d46855b13p10@ITGA8
9.99e-30FFCP PHASE1:Hg19::chr10:15762107..15762114,-#_28f8408f4e0357dce981f10d46855b13p10@ITGA8
1.33e-29FFCP PHASE1:Hg19::chr17:79071218..79071221,-#_b131ee736fd685a5a6db86f215c89691p@chr17:79071218..79071221, -
1.33e-29FFCP PHASE2:Hg19::chrX:132670143..132670152,-#_b131ee736fd685a5a6db86f215c89691p@chrX:132670143..132670152, -
1.33e-29FFCP PHASE2:Hg19::chr17:79071218..79071221,-#_b131ee736fd685a5a6db86f215c89691p@chr17:79071218..79071221, -
1.33e-29FFCP PHASE2:Hg19::chr22:28193943..28193956,-#_b131ee736fd685a5a6db86f215c89691p@chr22:28193943..28193956, -
1.33e-29FFCP PHASE1:Hg19::chr22:28193943..28193956,-#_b131ee736fd685a5a6db86f215c89691p@chr22:28193943..28193956, -
1.33e-29FFCP PHASE1:Hg19::chrX:132670143..132670152,-#_b131ee736fd685a5a6db86f215c89691p@chrX:132670143..132670152, -
1.78e-29FFCP PHASE2:Hg19::chr1:21904551..21904569,-#_5a9f89c474fd7431a727af9d7b429349p@chr1:21904551..21904569, -
1.78e-29FFCP PHASE1:Hg19::chr1:21904551..21904569,-#_5a9f89c474fd7431a727af9d7b429349p@chr1:21904551..21904569, -
3.16e-29FFCP PHASE1:Hg19::chr1:156470861..156470868,-#_8b92b45f8a21cc658f42e0991c3d0ffap18@MEF2D
3.16e-29FFCP PHASE2:Hg19::chr14:89044406..89044416,+#_8b92b45f8a21cc658f42e0991c3d0ffap@chr14:89044406..89044416, +
3.16e-29FFCP PHASE1:Hg19::chr14:89044406..89044416,+#_8b92b45f8a21cc658f42e0991c3d0ffap@chr14:89044406..89044416, +
3.16e-29FFCP PHASE1:Hg19::chr8:57359975..57359992,-#_8b92b45f8a21cc658f42e0991c3d0ffap@chr8:57359975..57359992, -
3.16e-29FFCP PHASE2:Hg19::chr8:57359975..57359992,-#_8b92b45f8a21cc658f42e0991c3d0ffa-, p@chr8:57359975..57359992
3.16e-29FFCP PHASE2:Hg19::chr1:156470861..156470868,-#_8b92b45f8a21cc658f42e0991c3d0ffap18@MEF2D
4.2e-29FFCP PHASE1:Hg19::chr13:36046127..36046134,+#_04f4da55b4c4ab820c86fe2811c01216p@chr13:36046127..36046134, +
4.2e-29FFCP PHASE2:Hg19::chr1:75602768..75602785,+#_04f4da55b4c4ab820c86fe2811c01216+, p@chr1:75602768..75602785










Property "Property value" (as page type) with input value "UBPROP:0000001 "Bone that forms directly within mesenchyme, and does not replace other tissues.[TAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.