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UBERON:0002546

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Name:cranial placode
Namespace:FANTOM
Definition:"Ectodermal placode that develops in the head into a part of the sensory nervous system. With a few exceptions (lens, adenohypophyseal), cranial placodes are neurogenic" https://github.com/seger/aao/issues/4, UBERON:cjm
Xrefs:
links:

AAO:0010466
MAT:0000369
MIAA:0000369

XAO:0000305
Synonyms: "placode" BROAD [Wikipedia:Placode]
Comments:Editor note: to avoid confusion, we include neurogenic placode as a subclass. Do not merge. Terminological notes: The term placode or placodes also applies to developing organs such as teeth, mammary glands, hair follicles, feathers and scales. We include a separate parent class for this. Taxon notes: Comparisons of developmental gene expression suggest that the anterior ectoderm in amphioxus may be homologous to the vertebrate olfactory placode, the only vertebrate placode with primary, not secondary, neurons[PMID:11523831].
Alt_id: UBERON:MIAA_0000369-XAO_0000305

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data


Parents

is_a:UBERON:0005085(ectodermal placode)
part_of:UBERON:0000033(head)



Children

is a:UBERON:0003073 (lens placode),UBERON:0009122 (adenohypophyseal placode),UBERON:0009955 (neurogenic placode)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology




Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0002546 (cranial placode), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data


P-valueFFCPShort description
1.41e-88FFCP PHASE2:Hg19::chr22:25595823..25595826,+#_d7408ddd600950bd0d37a333082a72a5p1@CRYBB3
1.41e-88FFCP PHASE1:Hg19::chr22:25595823..25595826,+#_d7408ddd600950bd0d37a333082a72a5p1@CRYBB3
1.87e-86FFCP PHASE2:Mm9::chr9:42207998..42208009,-#_e751c663870c04b3e9be3a6d17109921p6@Tecta
1.87e-86FFCP PHASE1:Mm9::chr4:101908153..101908163,+#_e751c663870c04b3e9be3a6d17109921p@chr4:101908153..101908163, +
1.87e-86FFCP PHASE1:Mm9::chr14:31283085..31283097,-#_e751c663870c04b3e9be3a6d17109921p@chr14:31283085..31283097, -
1.87e-86FFCP PHASE1:Mm9::chr6:113251614..113251623,+#_e751c663870c04b3e9be3a6d17109921p@chr6:113251614..113251623, +
1.87e-86FFCP PHASE1:Mm9::chr1:63733478..63733491,-#_e751c663870c04b3e9be3a6d17109921p1@Dytn
1.87e-86FFCP PHASE1:Mm9::chr19:10536767..10536777,-#_e751c663870c04b3e9be3a6d17109921p@chr19:10536767..10536777, -
1.87e-86FFCP PHASE2:Mm9::chr16:96494788..96494801,+#_e751c663870c04b3e9be3a6d17109921p12@B3galt5
1.87e-86FFCP PHASE1:Mm9::chr15:103146966..103146971,-#_e751c663870c04b3e9be3a6d17109921p@chr15:103146966..103146971, -
1.87e-86FFCP PHASE2:Mm9::chr12:13508015..13508019,+#_e751c663870c04b3e9be3a6d17109921p@chr12:13508015..13508019, +
1.87e-86FFCP PHASE2:Mm9::chr16:45693840..45693856,-#_e751c663870c04b3e9be3a6d17109921p1@Tmprss7
1.87e-86FFCP PHASE1:Mm9::chr19:55256373..55256384,+#_e751c663870c04b3e9be3a6d17109921p@chr19:55256373..55256384, +
1.87e-86FFCP PHASE1:Mm9::chr13:78322370..78322376,-#_e751c663870c04b3e9be3a6d17109921p4@uc007rhb.1
1.87e-86FFCP PHASE1:Mm9::chr7:109052262..109052291,-#_e751c663870c04b3e9be3a6d17109921p1@Tomt
1.87e-86FFCP PHASE1:Mm9::chrX:154140781..154140788,+#_e751c663870c04b3e9be3a6d17109921p@chrX:154140781..154140788, +
1.87e-86FFCP PHASE1:Mm9::chr3:69811606..69811616,+#_e751c663870c04b3e9be3a6d17109921p2@Otol1
1.87e-86FFCP PHASE2:Mm9::chr13:78257454..78257465,+#_e751c663870c04b3e9be3a6d17109921p@chr13:78257454..78257465, +
1.87e-86FFCP PHASE2:Mm9::chrX:154140781..154140788,+#_e751c663870c04b3e9be3a6d17109921p@chrX:154140781..154140788, +
1.87e-86FFCP PHASE1:Mm9::chr9:42207887..42207960,-#_e751c663870c04b3e9be3a6d17109921p1@Tecta
1.87e-86FFCP PHASE2:Mm9::chr10:107349392..107349413,-#_e751c663870c04b3e9be3a6d17109921p2@Otogl
1.87e-86FFCP PHASE1:Mm9::chr13:58283583..58283607,-#_e751c663870c04b3e9be3a6d17109921p@chr13:58283583..58283607, -
1.87e-86FFCP PHASE2:Mm9::chr1:93218682..93218691,+#_e751c663870c04b3e9be3a6d17109921p2@Espnl
1.87e-86FFCP PHASE2:Mm9::chr4:154208086..154208123,+#_e751c663870c04b3e9be3a6d17109921p@chr4:154208086..154208123, +
1.87e-86FFCP PHASE1:Mm9::chr3:35012397..35012405,+#_e751c663870c04b3e9be3a6d17109921p@chr3:35012397..35012405, +
1.87e-86FFCP PHASE1:Mm9::chr15:89215306..89215315,+#_e751c663870c04b3e9be3a6d17109921p@chr15:89215306..89215315, +
1.87e-86FFCP PHASE1:Mm9::chr10:107349430..107349440,-#_e751c663870c04b3e9be3a6d17109921p3@Otogl
1.87e-86FFCP PHASE2:Mm9::chr13:43699228..43699239,+#_e751c663870c04b3e9be3a6d17109921p@chr13:43699228..43699239, +
1.87e-86FFCP PHASE2:Mm9::chr15:85334335..85334353,+#_e751c663870c04b3e9be3a6d17109921p@chr15:85334335..85334353, +
1.87e-86FFCP PHASE2:Mm9::chr9:42207397..42207408,-#_e751c663870c04b3e9be3a6d17109921p@chr9:42207397..42207408, -
1.87e-86FFCP PHASE2:Mm9::chr6:113251614..113251623,+#_e751c663870c04b3e9be3a6d17109921p@chr6:113251614..113251623, +
1.87e-86FFCP PHASE1:Mm9::chr11:8405038..8405048,-#_e751c663870c04b3e9be3a6d17109921p@chr11:8405038..8405048, -
1.87e-86FFCP PHASE2:Mm9::chr3:154459246..154459253,+#_e751c663870c04b3e9be3a6d17109921p@chr3:154459246..154459253, +
1.87e-86FFCP PHASE1:Mm9::chr5:30710403..30710406,-#_e751c663870c04b3e9be3a6d17109921p10@Otof
1.87e-86FFCP PHASE1:Mm9::chr1:172843885..172843890,-#_e751c663870c04b3e9be3a6d17109921p@chr1:172843885..172843890, -
1.87e-86FFCP PHASE1:Mm9::chr12:13508015..13508019,+#_e751c663870c04b3e9be3a6d17109921p@chr12:13508015..13508019, +
1.87e-86FFCP PHASE2:Mm9::chr13:78322383..78322395,-#_e751c663870c04b3e9be3a6d17109921p2@uc007rhb.1
1.87e-86FFCP PHASE1:Mm9::chr9:42206745..42206774,-#_e751c663870c04b3e9be3a6d17109921p@chr9:42206745..42206774, -
1.87e-86FFCP PHASE1:Mm9::chr2:67011921..67011934,+#_e751c663870c04b3e9be3a6d17109921p2@Gm1322
1.87e-86FFCP PHASE1:Mm9::chr14:63099970..63099980,-#_e751c663870c04b3e9be3a6d17109921p@chr14:63099970..63099980, -
1.87e-86FFCP PHASE1:Mm9::chr9:66860888..66860899,+#_e751c663870c04b3e9be3a6d17109921p@chr9:66860888..66860899, +
1.87e-86FFCP PHASE2:Mm9::chr18:38104702..38104718,-#_e751c663870c04b3e9be3a6d17109921p@chr18:38104702..38104718, -
1.87e-86FFCP PHASE2:Mm9::chr9:41495920..41495928,-#_e751c663870c04b3e9be3a6d17109921p@chr9:41495920..41495928, -
1.87e-86FFCP PHASE1:Mm9::chr7:109265277..109265288,-#_e751c663870c04b3e9be3a6d17109921p4@Chrna10
1.87e-86FFCP PHASE1:Mm9::chr4:115556939..115556945,+#_e751c663870c04b3e9be3a6d17109921p4@Kncn
1.87e-86FFCP PHASE1:Mm9::chr14:47293487..47293493,-#_e751c663870c04b3e9be3a6d17109921p@chr14:47293487..47293493, -
1.87e-86FFCP PHASE1:Mm9::chr7:27964761..27964768,+#_e751c663870c04b3e9be3a6d17109921p@chr7:27964761..27964768, +
1.87e-86FFCP PHASE2:Mm9::chr10:80806020..80806031,-#_e751c663870c04b3e9be3a6d17109921p3@Gipc3
1.87e-86FFCP PHASE1:Mm9::chr2:128881546..128881553,-#_e751c663870c04b3e9be3a6d17109921p@chr2:128881546..128881553, -
1.87e-86FFCP PHASE2:Mm9::chr6:86745686..86745727,-#_e751c663870c04b3e9be3a6d17109921p@chr6:86745686..86745727, -
1.87e-86FFCP PHASE2:Mm9::chr10:67371994..67372010,+#_e751c663870c04b3e9be3a6d17109921p@chr10:67371994..67372010, +
1.87e-86FFCP PHASE2:Mm9::chr9:42207852..42207876,-#_e751c663870c04b3e9be3a6d17109921p2@Tecta
1.87e-86FFCP PHASE1:Mm9::chr18:81314626..81314636,+#_e751c663870c04b3e9be3a6d17109921p@chr18:81314626..81314636, +
1.87e-86FFCP PHASE2:Mm9::chr3:31585340..31585360,+#_e751c663870c04b3e9be3a6d17109921p@chr3:31585340..31585360, +
1.87e-86FFCP PHASE2:Mm9::chr1:172843796..172843799,-#_e751c663870c04b3e9be3a6d17109921p@chr1:172843796..172843799, -
1.87e-86FFCP PHASE2:Mm9::chr5:30710455..30710464,-#_e751c663870c04b3e9be3a6d17109921p9@Otof
1.87e-86FFCP PHASE1:Mm9::chr9:42208142..42208157,-#_e751c663870c04b3e9be3a6d17109921p10@Tecta
1.87e-86FFCP PHASE1:Mm9::chr4:151505798..151505818,-#_e751c663870c04b3e9be3a6d17109921p21@Espn
1.87e-86FFCP PHASE2:Mm9::chr15:97806034..97806061,+#_e751c663870c04b3e9be3a6d17109921p@chr15:97806034..97806061, +
1.87e-86FFCP PHASE2:Mm9::chr14:20649897..20649907,+#_e751c663870c04b3e9be3a6d17109921p@chr14:20649897..20649907, +
1.87e-86FFCP PHASE2:Mm9::chr10:108316802..108316807,-#_e751c663870c04b3e9be3a6d17109921p@chr10:108316802..108316807, -
1.87e-86FFCP PHASE1:Mm9::chr13:76964459..76964469,+#_e751c663870c04b3e9be3a6d17109921p15@Mctp1
1.87e-86FFCP PHASE2:Mm9::chr9:50968647..50968668,-#_e751c663870c04b3e9be3a6d17109921p@chr9:50968647..50968668, -
1.87e-86FFCP PHASE2:Mm9::chr14:63099970..63099980,-#_e751c663870c04b3e9be3a6d17109921p@chr14:63099970..63099980, -
1.87e-86FFCP PHASE2:Mm9::chr5:3909290..3909299,+#_e751c663870c04b3e9be3a6d17109921p@chr5:3909290..3909299, +
1.87e-86FFCP PHASE1:Mm9::chr5:3909310..3909321,+#_e751c663870c04b3e9be3a6d17109921p@chr5:3909310..3909321, +
1.87e-86FFCP PHASE1:Mm9::chr1:182528371..182528385,+#_e751c663870c04b3e9be3a6d17109921p@chr1:182528371..182528385, +
1.87e-86FFCP PHASE2:Mm9::chr8:125802236..125802251,-#_e751c663870c04b3e9be3a6d17109921p3@Fanca
1.87e-86FFCP PHASE1:Mm9::chr9:42207777..42207789,-#_e751c663870c04b3e9be3a6d17109921p7@Tecta
1.87e-86FFCP PHASE1:Mm9::chr17:13983102..13983126,+#_e751c663870c04b3e9be3a6d17109921p@chr17:13983102..13983126, +
1.87e-86FFCP PHASE1:Mm9::chr19:4140290..4140321,+#_e751c663870c04b3e9be3a6d17109921p2@Gpr152
1.87e-86FFCP PHASE1:Mm9::chr11:11599532..11599539,-#_e751c663870c04b3e9be3a6d17109921p@chr11:11599532..11599539, -
1.87e-86FFCP PHASE2:Mm9::chr3:35012397..35012405,+#_e751c663870c04b3e9be3a6d17109921p@chr3:35012397..35012405, +
1.87e-86FFCP PHASE2:Mm9::chr4:115556972..115556979,+#_e751c663870c04b3e9be3a6d17109921p3@Kncn
1.87e-86FFCP PHASE2:Mm9::chr17:13983102..13983126,+#_e751c663870c04b3e9be3a6d17109921p@chr17:13983102..13983126, +
1.87e-86FFCP PHASE1:Mm9::chr10:107349309..107349318,-#_e751c663870c04b3e9be3a6d17109921p4@Otogl
1.87e-86FFCP PHASE2:Mm9::chr9:92087926..92087938,+#_e751c663870c04b3e9be3a6d17109921p2@Plscr5
1.87e-86FFCP PHASE2:Mm9::chr9:42206730..42206739,-#_e751c663870c04b3e9be3a6d17109921p@chr9:42206730..42206739, -
1.87e-86FFCP PHASE2:Mm9::chr3:58626291..58626298,-#_e751c663870c04b3e9be3a6d17109921p@chr3:58626291..58626298, -
1.87e-86FFCP PHASE2:Mm9::chr19:10536797..10536802,-#_e751c663870c04b3e9be3a6d17109921p@chr19:10536797..10536802, -
1.87e-86FFCP PHASE2:Mm9::chr9:56208792..56208814,-#_e751c663870c04b3e9be3a6d17109921p@chr9:56208792..56208814, -
1.87e-86FFCP PHASE1:Mm9::chr12:109905468..109905474,+#_e751c663870c04b3e9be3a6d17109921p@chr12:109905468..109905474, +
1.87e-86FFCP PHASE2:Mm9::chr13:48087761..48087775,-#_e751c663870c04b3e9be3a6d17109921p@chr13:48087761..48087775, -
1.87e-86FFCP PHASE1:Mm9::chr16:93971325..93971337,-#_e751c663870c04b3e9be3a6d17109921p@chr16:93971325..93971337, -
1.87e-86FFCP PHASE2:Mm9::chr3:69811606..69811616,+#_e751c663870c04b3e9be3a6d17109921p2@Otol1
1.87e-86FFCP PHASE1:Mm9::chr1:93235253..93235264,+#_e751c663870c04b3e9be3a6d17109921p@chr1:93235253..93235264, +
1.87e-86FFCP PHASE2:Mm9::chr18:81327205..81327211,+#_e751c663870c04b3e9be3a6d17109921p@chr18:81327205..81327211, +
1.87e-86FFCP PHASE2:Mm9::chr11:11599532..11599539,-#_e751c663870c04b3e9be3a6d17109921p@chr11:11599532..11599539, -
1.87e-86FFCP PHASE2:Mm9::chr12:77084875..77084885,+#_e751c663870c04b3e9be3a6d17109921p@chr12:77084875..77084885, +
1.87e-86FFCP PHASE2:Mm9::chr11:4689776..4689785,-#_e751c663870c04b3e9be3a6d17109921p@chr11:4689776..4689785, -
1.87e-86FFCP PHASE2:Mm9::chr3:100724698..100724706,+#_e751c663870c04b3e9be3a6d17109921p@chr3:100724698..100724706, +
1.87e-86FFCP PHASE2:Mm9::chr3:106986057..106986062,+#_e751c663870c04b3e9be3a6d17109921p1@Kcna10
1.87e-86FFCP PHASE2:Mm9::chr9:42208023..42208043,-#_e751c663870c04b3e9be3a6d17109921p4@Tecta
1.87e-86FFCP PHASE2:Mm9::chr1:63733478..63733491,-#_e751c663870c04b3e9be3a6d17109921p1@Dytn
1.87e-86FFCP PHASE1:Mm9::chr19:10536797..10536802,-#_e751c663870c04b3e9be3a6d17109921p@chr19:10536797..10536802, -
1.87e-86FFCP PHASE1:Mm9::chr3:100724698..100724706,+#_e751c663870c04b3e9be3a6d17109921p@chr3:100724698..100724706, +
1.87e-86FFCP PHASE1:Mm9::chr17:31335869..31335899,-#_e751c663870c04b3e9be3a6d17109921p1@Tmprss3
1.87e-86FFCP PHASE1:Mm9::chr8:13435173..13435186,+#_e751c663870c04b3e9be3a6d17109921p6@Fam70b
1.87e-86FFCP PHASE1:Mm9::chr13:78322383..78322395,-#_e751c663870c04b3e9be3a6d17109921p2@uc007rhb.1
1.87e-86FFCP PHASE2:Mm9::chr19:55255206..55255223,+#_e751c663870c04b3e9be3a6d17109921p1@Tectb