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UBERON:0002616

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Name:regional part of brain
Namespace:FANTOM
Definition:"A multi-tissue structure that is part of a brain [Obol]." [OBOL:automatic]
Xrefs:
links:

FMA:55676
ncithesaurus:Brain_Part
NIF_GrossAnatomy:birnlex_1167

SCTID:384763002
Synonyms: "anatomical structure of brain" EXACT [OBOL:automatic]
"biological structure of brain" EXACT [OBOL:automatic]
"brain anatomical structure" EXACT [OBOL:automatic]
"brain biological structure" EXACT [OBOL:automatic]
"brain part" EXACT []
"neuraxis segment" EXACT [FMA:55676]
"segment of brain" EXACT [NIF_GrossAnatomy:birnlex_1167]
Alt_id: UBERON:NIF_GrossAnatomy_birnlex_1167-FMA_55676

Ontology association
Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.

link to ontology dataset
data


Parents

is_a:UBERON:0000073(regional part of nervous system),UBERON:0004121(ectoderm-derived structure)
part_of:UBERON:0000955(brain)



Children

is a:UBERON:0000369 (corpus striatum),UBERON:0001890 (forebrain),UBERON:0001891 (midbrain),UBERON:0002028 (hindbrain),UBERON:0002275 (reticular formation),UBERON:0002298 (brainstem),UBERON:0002680 (regional part of metencephalon),UBERON:0002780 (regional part of forebrain),UBERON:0002950 (regional part of midbrain),UBERON:0004684 (raphe nuclei),UBERON:0005408 (circumventricular organ),UBERON:0010009 (aggregate regional part of brain),UBERON:0010092 (future metencephalon),UBERON:0010096 (future myelencephalon),UBERON:0015827 (brainstem reticular formation)

Ontology Tree: Loaded from BioPortal


FF samples
It includes FANTOM5 samples that overlay the Uberon ontology


Human (Homo sapiens)

... further results Mouse (Mus musculus)

... further results


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0002616 (regional part of brain), sorted by p-values
Analyst: Hideya Kawaji

link to source dataset
human : data
mouse : data


P-valueFFCPShort description
1.03e-139FFCP PHASE1:Hg19::chr18:55019840..55019850,+#_ba6c931a600123e58ed2d1e553fd5932p5@ST8SIA3
1.03e-139FFCP PHASE2:Hg19::chr18:55019840..55019850,+#_ba6c931a600123e58ed2d1e553fd5932p5@ST8SIA3
1.4e-135FFCP PHASE2:Hg19::chr5:11588907..11588967,-#_22291291f06a50d1fbd3d60a02b72a68p3@CTNND2
1.4e-135FFCP PHASE1:Hg19::chr5:11588907..11588967,-#_22291291f06a50d1fbd3d60a02b72a68p3@CTNND2
1.47e-135FFCP PHASE1:Hg19::chr12:106976678..106976708,+#_5cd69b3257baf52004c83cc782f40de3p2@RFX4
1.47e-135FFCP PHASE2:Hg19::chr12:106976678..106976708,+#_5cd69b3257baf52004c83cc782f40de3p2@RFX4
1.29e-133FFCP PHASE1:Hg19::chr2:74612644..74612670,+#_500f7a015c7334323727edc1732769eap1@ENST00000412957
1.29e-133FFCP PHASE2:Hg19::chr2:74612644..74612670,+#_500f7a015c7334323727edc1732769eap1@ENST00000412957
1.78e-132FFCP PHASE2:Hg19::chr4:46126063..46126087,-#_9754a7de5bf2e12f19be85a904e25b6ep2@GABRG1
1.78e-132FFCP PHASE1:Hg19::chr4:46126063..46126087,-#_9754a7de5bf2e12f19be85a904e25b6ep2@GABRG1
1.89e-132FFCP PHASE1:Hg19::chr2:50201220..50201261,-#_09305b994e9775e2875aadfd075d3d9ap3@NRXN1
1.89e-132FFCP PHASE2:Hg19::chr2:50201220..50201261,-#_09305b994e9775e2875aadfd075d3d9ap3@NRXN1
4.31e-132FFCP PHASE1:Hg19::chr5:87439352..87439386,-#_dcefb1356595c6db32be49934241aa9cp@chr5:87439352..87439386, -
4.31e-132FFCP PHASE2:Hg19::chr5:87439352..87439386,-#_dcefb1356595c6db32be49934241aa9cp@chr5:87439352..87439386, -
5.61e-132FFCP PHASE2:Hg19::chr1:84630610..84630621,+#_a97a47ef60a67242150462d838732605p17@PRKACB
5.61e-132FFCP PHASE1:Hg19::chr1:84630610..84630621,+#_a97a47ef60a67242150462d838732605p17@PRKACB
1.28e-130FFCP PHASE1:Hg19::chr5:112074041..112074101,+#_4c9b5a9fe3d4f56d55a0f8075dbe77b8p4@APC
1.28e-130FFCP PHASE2:Hg19::chr5:112074041..112074101,+#_4c9b5a9fe3d4f56d55a0f8075dbe77b8p4@APC
2.58e-130FFCP PHASE2:Hg19::chr5:11384884..11384916,-#_b8edc7b87056dd6794dad7e32f258b6dp8@CTNND2
2.58e-130FFCP PHASE1:Hg19::chr5:11384884..11384916,-#_b8edc7b87056dd6794dad7e32f258b6dp8@CTNND2
3.44e-130FFCP PHASE1:Hg19::chr12:106976774..106976788,+#_3b4f0c93446efc74932f365452f484fdp1@RFX4
3.44e-130FFCP PHASE2:Hg19::chr12:106976774..106976788,+#_3b4f0c93446efc74932f365452f484fdp1@RFX4
6.81e-130FFCP PHASE1:Hg19::chr6:136847393..136847403,-#_367212f7c4a31d44fdd422a53a9ec979p15@MAP7
6.81e-130FFCP PHASE2:Hg19::chr6:136847393..136847403,-#_367212f7c4a31d44fdd422a53a9ec979p15@MAP7
1.57e-129FFCP PHASE2:Hg19::chr5:146314142..146314146,-#_1753d048add5dbd80b3bf663e6ae2380p@chr5:146314142..146314146, -
1.57e-129FFCP PHASE1:Hg19::chr5:146314142..146314146,-#_1753d048add5dbd80b3bf663e6ae2380-, p@chr5:146314142..146314146
3.15e-129FFCP PHASE2:Hg19::chr18:32398296..32398318,+#_e46d42888347a19a39b51063704497d6p7@DTNA
3.15e-129FFCP PHASE1:Hg19::chr18:32398296..32398318,+#_e46d42888347a19a39b51063704497d6p7@DTNA
5.62e-129FFCP PHASE1:Hg19::chr17:68101117..68101162,+#_b23e55c88f0e09b5f28d9a3b757ad4a0p2@KCNJ16
5.62e-129FFCP PHASE2:Hg19::chr17:68101117..68101162,+#_b23e55c88f0e09b5f28d9a3b757ad4a0p2@KCNJ16
6.58e-129FFCP PHASE2:Hg19::chr1:84630574..84630602,+#_bac21da3bf675384178e603012dfcba5p9@PRKACB
6.58e-129FFCP PHASE1:Hg19::chr1:84630574..84630602,+#_bac21da3bf675384178e603012dfcba5p9@PRKACB
9.65e-129FFCP PHASE1:Hg19::chr3:153838982..153839001,-#_ce5b9a6eaa5a1f0d3cfde242700af0c8p4@ARHGEF26-AS1
9.65e-129FFCP PHASE2:Hg19::chr3:153838982..153839001,-#_ce5b9a6eaa5a1f0d3cfde242700af0c8p4@ARHGEF26-AS1
6.04e-128FFCP PHASE1:Hg19::chr15:79576178..79576222,-#_0a08e5b027621366ebd994c676fcb16bp1@ENST00000559225, p1@ENST00000559979, p1@ENST00000560533
6.04e-128FFCP PHASE2:Hg19::chr15:79576178..79576222,-#_0a08e5b027621366ebd994c676fcb16bp1@ENST00000559225, p1@ENST00000559979, p1@ENST00000560533
6.67e-128FFCP PHASE1:Hg19::chr12:106976656..106976672,+#_6a65dfa52ae2a5c31652412ef3cc6d64p4@RFX4
6.67e-128FFCP PHASE2:Hg19::chr12:106976656..106976672,+#_6a65dfa52ae2a5c31652412ef3cc6d64p4@RFX4
7.68e-128FFCP PHASE2:Hg19::chr5:87437100..87437115,-#_2b843f5b5e801e287eb3e26167829dc3p1@LOC100289347
7.68e-128FFCP PHASE1:Hg19::chr5:87437100..87437115,-#_2b843f5b5e801e287eb3e26167829dc3p1@LOC100289347
1.54e-126FFCP PHASE1:Hg19::chr2:74612614..74612643,+#_3759b6293049151c08d94fee8b5225a6p1@ENST00000418990, p1@ENST00000426715, p1@ENST00000427343
1.54e-126FFCP PHASE2:Hg19::chr2:74612614..74612643,+#_3759b6293049151c08d94fee8b5225a6p1@ENST00000418990, p1@ENST00000426715, p1@ENST00000427343
1.55e-126FFCP PHASE2:Hg19::chr11:35441048..35441059,-#_32884991f85bdab84ff0882dcba7e491p4@SLC1A2
1.55e-126FFCP PHASE1:Hg19::chr11:35441048..35441059,-#_32884991f85bdab84ff0882dcba7e491p4@SLC1A2
1.87e-126FFCP PHASE1:Hg19::chr5:11386115..11386130,-#_288cb56083f916d5c4bb4bfe12dc8eeep2@CTNND2
1.87e-126FFCP PHASE2:Hg19::chr5:11386115..11386130,-#_288cb56083f916d5c4bb4bfe12dc8eeep2@CTNND2
2.32e-126FFCP PHASE1:Hg19::chr6:80131670..80131724,+#_aca905ef8134b036832c3f1a0bbf1123p@chr6:80131670..80131724, +
2.32e-126FFCP PHASE2:Hg19::chr6:80131670..80131724,+#_aca905ef8134b036832c3f1a0bbf1123+, p@chr6:80131670..80131724
2.35e-126FFCP PHASE2:Hg19::chr9:87283501..87283520,+#_f09ee588847064f3ff6ea4792a5c6ce9p17@NTRK2
2.35e-126FFCP PHASE1:Hg19::chr9:87283501..87283520,+#_f09ee588847064f3ff6ea4792a5c6ce9p17@NTRK2
2.47e-126FFCP PHASE1:Hg19::chrX:13835312..13835321,-#_65072b09751e70c0950836c272af9e7bp9@GPM6B
2.47e-126FFCP PHASE2:Hg19::chrX:13835312..13835321,-#_65072b09751e70c0950836c272af9e7bp9@GPM6B
6.64e-126FFCP PHASE1:Hg19::chr17:54230819..54230848,+#_df376d90f78e167d1829362cf75bd97ap1@ANKFN1
6.64e-126FFCP PHASE2:Hg19::chr17:54230819..54230848,+#_df376d90f78e167d1829362cf75bd97ap1@ANKFN1
8.82e-126FFCP PHASE2:Hg19::chr2:73286253..73286279,-#_74805fcc2a45cfa25a80039ac8f27a6ap3@SFXN5
8.82e-126FFCP PHASE1:Hg19::chr2:73286253..73286279,-#_74805fcc2a45cfa25a80039ac8f27a6ap3@SFXN5
1.13e-125FFCP PHASE1:Hg19::chr15:46702499..46702523,+#_9ce5a7dfda997fb95ab4848afab1baaap@chr15:46702499..46702523, +
1.13e-125FFCP PHASE2:Hg19::chr15:46702499..46702523,+#_9ce5a7dfda997fb95ab4848afab1baaap@chr15:46702499..46702523, +
1.15e-125FFCP PHASE1:Hg19::chr6:56716896..56716928,-#_3af9a052a503985cdc198ef1a2de3b0ep8@DST
1.15e-125FFCP PHASE2:Hg19::chr6:56716896..56716928,-#_3af9a052a503985cdc198ef1a2de3b0ep8@DST
1.37e-125FFCP PHASE1:Hg19::chr3:167452969..167453019,+#_c228f40c6e891c3bf01ecb05c82ca091p2@SERPINI1
1.37e-125FFCP PHASE2:Hg19::chr3:167452969..167453019,+#_c228f40c6e891c3bf01ecb05c82ca091p2@SERPINI1
1.38e-125FFCP PHASE2:Hg19::chr5:160279207..160279247,-#_60e24fc3937694621eccf8505a327ccap1@ATP10B
1.38e-125FFCP PHASE1:Hg19::chr5:160279207..160279247,-#_60e24fc3937694621eccf8505a327ccap1@ATP10B
1.45e-125FFCP PHASE1:Hg19::chr4:46126009..46126045,-#_a1acd7957b9d51e08d31d939b09107f6p1@GABRG1
1.45e-125FFCP PHASE2:Hg19::chr4:46126009..46126045,-#_a1acd7957b9d51e08d31d939b09107f6p1@GABRG1
2.45e-125FFCP PHASE2:Hg19::chr1:2005182..2005194,+#_f1a82684b04ef28f91c41a00094676acp8@PRKCZ
2.45e-125FFCP PHASE1:Hg19::chr1:2005182..2005194,+#_f1a82684b04ef28f91c41a00094676acp8@PRKCZ
2.7e-125FFCP PHASE1:Hg19::chrX:139794589..139794595,+#_5094715d9599de1b6294e11d47965f3cp@chrX:139794589..139794595, +
2.7e-125FFCP PHASE2:Hg19::chrX:139794589..139794595,+#_5094715d9599de1b6294e11d47965f3cp@chrX:139794589..139794595, +
2.73e-125FFCP PHASE1:Hg19::chr14:24047772..24047790,-#_852bac6a97d293cc97716d45a2662041p6@JPH4
2.73e-125FFCP PHASE2:Hg19::chr14:24047772..24047790,-#_852bac6a97d293cc97716d45a2662041p6@JPH4
4.98e-125FFCP PHASE1:Hg19::chr5:161275118..161275138,+#_70282e7b2fb0dbc49857f4e9dfa85d2fp3@GABRA1
4.98e-125FFCP PHASE2:Hg19::chr5:161275118..161275138,+#_70282e7b2fb0dbc49857f4e9dfa85d2fp3@GABRA1
1.02e-124FFCP PHASE1:Hg19::chr7:47420733..47420758,-#_c674abcc6d3efa5194df2381abb8e3cd-, p@chr7:47420733..47420758
1.02e-124FFCP PHASE2:Hg19::chr7:47420733..47420758,-#_c674abcc6d3efa5194df2381abb8e3cd-, p@chr7:47420733..47420758
1.87e-124FFCP PHASE1:Hg19::chr17:7558857..7558903,+#_7c1e69bc51aa7a9fdc8053315a564fcep@chr17:7558857..7558903, +
1.87e-124FFCP PHASE2:Hg19::chr17:7558857..7558903,+#_7c1e69bc51aa7a9fdc8053315a564fcep@chr17:7558857..7558903, +
2.2e-124FFCP PHASE1:Hg19::chr1:110082487..110082535,+#_2718c9b479c7b2fb41edf625fa85768cp1@GPR61
2.2e-124FFCP PHASE2:Hg19::chr1:110082487..110082535,+#_2718c9b479c7b2fb41edf625fa85768cp1@GPR61
2.34e-124FFCP PHASE2:Hg19::chr6:29595998..29596020,-#_cdf94611b52789f72f162eea57b1cbdep5@GABBR1
2.34e-124FFCP PHASE1:Hg19::chr6:29595998..29596020,-#_cdf94611b52789f72f162eea57b1cbdep5@GABBR1
4.18e-124FFCP PHASE1:Hg19::chr16:72459772..72459794,+#_d9821de0187286ee99ebdaf54bcd63cbp2@uc002fch.1
4.18e-124FFCP PHASE2:Hg19::chr16:72459772..72459794,+#_d9821de0187286ee99ebdaf54bcd63cbp2@uc002fch.1
4.41e-124FFCP PHASE2:Hg19::chr5:11904100..11904112,-#_6d17ec502e4a94afc970e753622d430cp19@CTNND2
4.41e-124FFCP PHASE1:Hg19::chr5:11904100..11904112,-#_6d17ec502e4a94afc970e753622d430cp19@CTNND2
5.54e-124FFCP PHASE1:Hg19::chr4:46126093..46126106,-#_002e909e7f3f38c3a549400487279ebcp3@GABRG1
5.54e-124FFCP PHASE2:Hg19::chr4:46126093..46126106,-#_002e909e7f3f38c3a549400487279ebcp3@GABRG1
1.31e-123FFCP PHASE1:Hg19::chr18:24443122..24443142,-#_7d64b27dca1db286d219a63b1c0fe740p5@AQP4
1.31e-123FFCP PHASE2:Hg19::chr18:24443122..24443142,-#_7d64b27dca1db286d219a63b1c0fe740p5@AQP4
1.63e-123FFCP PHASE1:Hg19::chr17:36760961..36760976,-#_08f41326be54d40d896de9387014ca53p2@SRCIN1
1.63e-123FFCP PHASE2:Hg19::chr17:36760961..36760976,-#_08f41326be54d40d896de9387014ca53p2@SRCIN1
1.85e-123FFCP PHASE1:Hg19::chr2:210526233..210526258,+#_bd7a4c6b34c54530d02c861fe36cc238p9@MAP2
1.85e-123FFCP PHASE2:Hg19::chr2:210526233..210526258,+#_bd7a4c6b34c54530d02c861fe36cc238p9@MAP2
2.38e-123FFCP PHASE1:Hg19::chr5:161494521..161494557,+#_2a4b75495c7f5865fde8a11d6531eb11p7@GABRG2
2.38e-123FFCP PHASE2:Hg19::chr5:161494521..161494557,+#_2a4b75495c7f5865fde8a11d6531eb11p7@GABRG2
3.91e-123FFCP PHASE2:Hg19::chr1:156217805..156217817,-#_c966ccb8fb58c6826cf31a90bb30c31ep2@PAQR6
3.91e-123FFCP PHASE1:Hg19::chr1:156217805..156217817,-#_c966ccb8fb58c6826cf31a90bb30c31ep2@PAQR6
6.32e-123FFCP PHASE2:Hg19::chr2:73286294..73286310,-#_464bf2f1f9b5402fe4d38538e734445ap4@SFXN5
6.32e-123FFCP PHASE1:Hg19::chr2:73286294..73286310,-#_464bf2f1f9b5402fe4d38538e734445ap4@SFXN5