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UBERON:0002619

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Name:regional part of cerebral cortex
Namespace:FANTOM
Definition:"A regional part of brain that is part of a cerebral cortex [Obol]." [OBOL:automatic]
Xrefs:
links:

FMA:242193
MA:0000187
NIF_GrossAnatomy:birnlex_1173

SCTID:119408004
Synonyms: "cerebral cortex part" EXACT []
"region of cerebral cortex" EXACT [FMA:242193]
"segment of cerebral cortex" NARROW [NIF_GrossAnatomy:birnlex_1173]
Comments:todo - check MA term
Alt_id: UBERON:0003208
UBERON:NIF_GrossAnatomy_birnlex_1173-FMA_68603

Ontology association
Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.

link to ontology dataset
data


Parents

is_a:UBERON:0002791(regional part of telencephalon)
part_of:UBERON:0000956(cerebral cortex)



Children

is a:UBERON:0000411 (visual cortex),UBERON:0001950 (neocortex),UBERON:0003022 (lobe parts of cerebral cortex)

Ontology Tree: Loaded from BioPortal


FF samples
It includes FANTOM5 samples that overlay the Uberon ontology


Human (Homo sapiens)

... further results Mouse (Mus musculus)

... further results


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0002619 (regional part of cerebral cortex), sorted by p-values
Analyst: Hideya Kawaji

link to source dataset
human : data
mouse : data


P-valueFFCPShort description
6.39e-147FFCP PHASE1:Hg19::chr10:11047712..11047726,+#_9c43c1a3f73aa62d6e6dc1f717ca81a5p@chr10:11047712..11047726, +
6.39e-147FFCP PHASE2:Hg19::chr10:11047712..11047726,+#_9c43c1a3f73aa62d6e6dc1f717ca81a5p@chr10:11047712..11047726, +
2.03e-143FFCP PHASE2:Hg19::chr8:89554929..89554960,+#_09f626665f3868d91fb08460cf80cc28p1@ENST00000518631
2.03e-143FFCP PHASE1:Hg19::chr8:89554929..89554960,+#_09f626665f3868d91fb08460cf80cc28p1@ENST00000518631
3.12e-135FFCP PHASE1:Hg19::chr10:10504250..10504278,+#_593e33466ff4b2474fc9a7f67afd6c6ap@chr10:10504250..10504278, +
3.12e-135FFCP PHASE2:Hg19::chr10:10504250..10504278,+#_593e33466ff4b2474fc9a7f67afd6c6ap@chr10:10504250..10504278, +
5.14e-135FFCP PHASE2:Hg19::chr18:70305745..70305761,-#_cc9539d68b3e99b101842c5174e64c8cp@chr18:70305745..70305761, -
5.14e-135FFCP PHASE1:Hg19::chr18:70305745..70305761,-#_cc9539d68b3e99b101842c5174e64c8cp@chr18:70305745..70305761, -
3.13e-133FFCP PHASE1:Hg19::chr18:70305621..70305634,-#_20a7830520074461aec69a87b075a2a7-, p@chr18:70305621..70305634
3.13e-133FFCP PHASE2:Hg19::chr18:70305621..70305634,-#_20a7830520074461aec69a87b075a2a7p@chr18:70305621..70305634, -
4.09e-133FFCP PHASE2:Hg19::chr22:43821065..43821115,+#_d6a0428dac670c9633439fc96f60c5b1p4@MPPED1
4.09e-133FFCP PHASE1:Hg19::chr22:43821065..43821115,+#_d6a0428dac670c9633439fc96f60c5b1p4@MPPED1
1.23e-128FFCP PHASE1:Hg19::chr10:11047746..11047768,+#_a374ec0d693f9bc92cd90518f657eca6p@chr10:11047746..11047768, +
1.23e-128FFCP PHASE2:Hg19::chr10:11047746..11047768,+#_a374ec0d693f9bc92cd90518f657eca6+, p@chr10:11047746..11047768
5.96e-126FFCP PHASE2:Hg19::chr19:54462560..54462571,+#_342b17e86a386e1a653ef18e210193a0p@chr19:54462560..54462571, +
5.96e-126FFCP PHASE1:Hg19::chr19:54462560..54462571,+#_342b17e86a386e1a653ef18e210193a0p@chr19:54462560..54462571, +
3.78e-125FFCP PHASE1:Hg19::chr10:11046599..11046616,+#_6d2ca38825dd1789b8520563e60a48adp@chr10:11046599..11046616, +
3.78e-125FFCP PHASE2:Hg19::chr10:11046599..11046616,+#_6d2ca38825dd1789b8520563e60a48adp@chr10:11046599..11046616, +
8.7e-125FFCP PHASE2:Hg19::chr8:110987986..110988010,-#_6fcda0d3ff8d945d7ed5b0890ee30e79p1@KCNV1
8.7e-125FFCP PHASE1:Hg19::chr8:110987986..110988010,-#_6fcda0d3ff8d945d7ed5b0890ee30e79p1@KCNV1
1.21e-124FFCP PHASE1:Hg19::chr5:17404114..17404134,+#_ce48a8379c6753177e64e9db12b8aa7ep1@ENST00000508677
1.21e-124FFCP PHASE2:Hg19::chr5:17404114..17404134,+#_ce48a8379c6753177e64e9db12b8aa7ep1@ENST00000508677
1.58e-124FFCP PHASE2:Hg19::chr11:133402367..133402378,-#_a8d6eced612acbecf585966bf109c447p8@OPCML
1.58e-124FFCP PHASE1:Hg19::chr11:133402367..133402378,-#_a8d6eced612acbecf585966bf109c447p8@OPCML
1.06e-123FFCP PHASE1:Hg19::chr14:70546905..70546935,-#_3c0699948606ff2af89a35680d5da4aep3@SLC8A3
1.06e-123FFCP PHASE2:Hg19::chr14:70546905..70546935,-#_3c0699948606ff2af89a35680d5da4aep3@SLC8A3
1.29e-122FFCP PHASE2:Hg19::chr16:758668..758696,+#_2cddf32e6c843758e15d03323faba0d1p@chr16:758668..758696, +
1.29e-122FFCP PHASE1:Hg19::chr16:758668..758696,+#_2cddf32e6c843758e15d03323faba0d1p@chr16:758668..758696, +
1.69e-122FFCP PHASE2:Hg19::chr5:22754690..22754720,+#_523067231d497a7a3b947edefc9ad71fp@chr5:22754690..22754720, +
1.69e-122FFCP PHASE1:Hg19::chr5:22754690..22754720,+#_523067231d497a7a3b947edefc9ad71fp@chr5:22754690..22754720, +
1.94e-122FFCP PHASE1:Hg19::chr8:67405573..67405590,+#_0b0e7b16991655aa9eef51ce6a3787bbp7@C8orf46
1.94e-122FFCP PHASE2:Hg19::chr8:67405573..67405590,+#_0b0e7b16991655aa9eef51ce6a3787bbp7@C8orf46
9.52e-122FFCP PHASE2:Hg19::chr9:10612907..10612918,-#_4b0cfc1730bd5de594eac69c72a4e11dp17@PTPRD
9.52e-122FFCP PHASE1:Hg19::chr9:10612907..10612918,-#_4b0cfc1730bd5de594eac69c72a4e11dp17@PTPRD
2.69e-121FFCP PHASE1:Hg19::chr12:62585176..62585196,-#_264a36cba1cc0b6641f1f14b905d03a0p14@FAM19A2
2.69e-121FFCP PHASE2:Hg19::chr12:62585176..62585196,-#_264a36cba1cc0b6641f1f14b905d03a0p14@FAM19A2
3.31e-121FFCP PHASE1:Hg19::chr10:11047633..11047685,+#_d5bec0ac0a7e7678690caf9349e86fe6p@chr10:11047633..11047685, +
3.31e-121FFCP PHASE2:Hg19::chr10:11047633..11047685,+#_d5bec0ac0a7e7678690caf9349e86fe6p@chr10:11047633..11047685, +
3.47e-121FFCP PHASE1:Hg19::chr18:70305699..70305738,-#_30fe0ac374b73820a490e55614ee133cp@chr18:70305699..70305738, -
3.47e-121FFCP PHASE2:Hg19::chr18:70305699..70305738,-#_30fe0ac374b73820a490e55614ee133cp@chr18:70305699..70305738, -
4.77e-121FFCP PHASE2:Hg19::chr6:160311995..160312034,+#_ac424b279878b80f7d71cdf42cf73549p@chr6:160311995..160312034, +
4.77e-121FFCP PHASE1:Hg19::chr6:160311995..160312034,+#_ac424b279878b80f7d71cdf42cf73549p@chr6:160311995..160312034, +
7.04e-121FFCP PHASE2:Hg19::chr12:87232669..87232696,-#_cfe9a02c4c3b37600c168448c8a39749p6@MGAT4C
7.04e-121FFCP PHASE2:Hg19::chr11:133402347..133402360,-#_cfe9a02c4c3b37600c168448c8a39749p6@OPCML
7.04e-121FFCP PHASE1:Hg19::chr11:133402347..133402360,-#_cfe9a02c4c3b37600c168448c8a39749p6@OPCML
7.04e-121FFCP PHASE1:Hg19::chr12:87232669..87232696,-#_cfe9a02c4c3b37600c168448c8a39749p6@MGAT4C
3.65e-120FFCP PHASE1:Hg19::chr8:110986427..110986445,-#_eddc8e570ab22f4421fddfbf1ac01bebp4@KCNV1
3.65e-120FFCP PHASE2:Hg19::chr8:110986427..110986445,-#_eddc8e570ab22f4421fddfbf1ac01bebp4@KCNV1
6.45e-120FFCP PHASE2:Hg19::chr20:1975321..1975338,-#_3176d312caa66e227b2eabf6afc637d4p3@PDYN
6.45e-120FFCP PHASE1:Hg19::chr20:1975321..1975338,-#_3176d312caa66e227b2eabf6afc637d4p3@PDYN
6.9e-120FFCP PHASE2:Hg19::chr6:62390886..62390903,-#_f6573b753544480f277cde99fbced321p1@ENST00000511849
6.9e-120FFCP PHASE2:Hg19::chr4:39064313..39064326,+#_f6573b753544480f277cde99fbced321p7@KLHL5
6.9e-120FFCP PHASE1:Hg19::chr4:39064313..39064326,+#_f6573b753544480f277cde99fbced321p7@KLHL5
6.9e-120FFCP PHASE1:Hg19::chr6:62390886..62390903,-#_f6573b753544480f277cde99fbced321p1@ENST00000511849
3.39e-119FFCP PHASE1:Hg19::chr6:12718426..12718446,+#_dd58c678a707930072e1882bd654e4c1p24@PHACTR1
3.39e-119FFCP PHASE2:Hg19::chr6:12718426..12718446,+#_dd58c678a707930072e1882bd654e4c1p24@PHACTR1
4.33e-118FFCP PHASE1:Hg19::chr15:30231269..30231299,-#_1698ed3d73fe0164623e5c5451cfb160p@chr15:30231269..30231299, -
4.33e-118FFCP PHASE2:Hg19::chr15:30231269..30231299,-#_1698ed3d73fe0164623e5c5451cfb160p@chr15:30231269..30231299, -
5.62e-118FFCP PHASE2:Hg19::chr11:45564023..45564028,-#_1d795cd13239a1df21424e875136ab40p1@ENST00000525855, p1@ENST00000527642, p1@ENST00000533315
5.62e-118FFCP PHASE1:Hg19::chr11:45564023..45564028,-#_1d795cd13239a1df21424e875136ab40p1@ENST00000525855, p1@ENST00000527642, p1@ENST00000533315
1.93e-117FFCP PHASE1:Hg19::chr10:116852602..116852626,+#_86bedcbf8c192e58010f9b86e286798ep5@ATRNL1
1.93e-117FFCP PHASE2:Hg19::chr10:116852602..116852626,+#_86bedcbf8c192e58010f9b86e286798ep5@ATRNL1
2.85e-117FFCP PHASE2:Hg19::chr5:94621232..94621256,-#_93b09a47551adc54d1a428b89fb1eea5p@chr5:94621232..94621256, -
2.85e-117FFCP PHASE1:Hg19::chr5:94621232..94621256,-#_93b09a47551adc54d1a428b89fb1eea5p@chr5:94621232..94621256, -
3.31e-117FFCP PHASE2:Hg19::chr2:136343886..136343897,+#_463b50b4a23dc1f0b36fb48082a4c364p4@R3HDM1
3.31e-117FFCP PHASE1:Hg19::chr2:136343886..136343897,+#_463b50b4a23dc1f0b36fb48082a4c364p4@R3HDM1
3.05e-116FFCP PHASE1:Hg19::chr12:122794425..122794445,-#_182d9112bf483884eef3949c91c986d7p@chr12:122794425..122794445, -
3.05e-116FFCP PHASE2:Hg19::chr12:122794425..122794445,-#_182d9112bf483884eef3949c91c986d7p@chr12:122794425..122794445, -
3.22e-116FFCP PHASE1:Hg19::chr2:10508688..10508712,+#_0cfa2df595bc13549bb5e1ce6009d1c8p8@HPCAL1
3.22e-116FFCP PHASE2:Hg19::chr2:10508688..10508712,+#_0cfa2df595bc13549bb5e1ce6009d1c8p8@HPCAL1
5.63e-116FFCP PHASE2:Hg19::chr12:14133429..14133438,-#_e91670c508f156ca87c98190c01618d5p3@GRIN2B
5.63e-116FFCP PHASE1:Hg19::chr12:14133429..14133438,-#_e91670c508f156ca87c98190c01618d5p3@GRIN2B
8.78e-116FFCP PHASE1:Hg19::chr17:37764312..37764326,-#_3fb007f73d2694ee99b70a5930f80314p2@NEUROD2
8.78e-116FFCP PHASE2:Hg19::chr17:37764312..37764326,-#_3fb007f73d2694ee99b70a5930f80314p2@NEUROD2
5.0e-115FFCP PHASE1:Hg19::chr16:758701..758727,+#_78236344d876ab5966ffbd7930a53524p@chr16:758701..758727, +
5.0e-115FFCP PHASE2:Hg19::chr16:758701..758727,+#_78236344d876ab5966ffbd7930a53524p@chr16:758701..758727, +
9.57e-115FFCP PHASE2:Hg19::chr5:80255907..80255942,+#_abc5fcbda447b4f2e4e08c5ddb64d765p@chr5:80255907..80255942, +
9.57e-115FFCP PHASE1:Hg19::chr5:80255907..80255942,+#_abc5fcbda447b4f2e4e08c5ddb64d765p@chr5:80255907..80255942, +
1.52e-114FFCP PHASE1:Hg19::chr11:84431459..84431498,-#_b20e09edf4472bc26fddd3d1dff0c50fp@chr11:84431459..84431498, -
1.52e-114FFCP PHASE2:Hg19::chr11:84431459..84431498,-#_b20e09edf4472bc26fddd3d1dff0c50fp@chr11:84431459..84431498, -
1.78e-114FFCP PHASE2:Hg19::chr1:177134348..177134360,-#_cdef4cec38217afceeb382186ee7667cp10@ASTN1
1.78e-114FFCP PHASE1:Hg19::chr1:177134348..177134360,-#_cdef4cec38217afceeb382186ee7667cp10@ASTN1
3.85e-114FFCP PHASE2:Hg19::chr4:6474536..6474563,-#_27e7773dfa41b4e714e8821400bbee0cp9@PPP2R2C
3.85e-114FFCP PHASE1:Hg19::chr4:6474536..6474563,-#_27e7773dfa41b4e714e8821400bbee0cp9@PPP2R2C
5.17e-114FFCP PHASE1:Hg19::chr17:36757284..36757327,+#_e4b341d30f14cf4ede0326c9afbfbd6cp@chr17:36757284..36757327, +
5.17e-114FFCP PHASE2:Hg19::chr17:36757284..36757327,+#_e4b341d30f14cf4ede0326c9afbfbd6cp@chr17:36757284..36757327, +
1.21e-113FFCP PHASE2:Hg19::chr1:50575292..50575326,+#_73f54ecfc3c55c822b0dbb9662e43080p8@ELAVL4
1.21e-113FFCP PHASE1:Hg19::chr1:50575292..50575326,+#_73f54ecfc3c55c822b0dbb9662e43080p8@ELAVL4
1.49e-113FFCP PHASE1:Hg19::chr10:14372834..14372846,-#_64234fb81c997772b4fdf7fc20b06f4ep12@FRMD4A
1.49e-113FFCP PHASE2:Hg19::chr10:14372834..14372846,-#_64234fb81c997772b4fdf7fc20b06f4ep12@FRMD4A
2.98e-113FFCP PHASE2:Hg19::chr6:53976259..53976270,+#_f156722c1dc87c24455706105b89ad6fp5@MLIP
2.98e-113FFCP PHASE1:Hg19::chr6:53976259..53976270,+#_f156722c1dc87c24455706105b89ad6fp5@MLIP
3.32e-113FFCP PHASE1:Hg19::chr5:56910048..56910074,+#_85ae4ea7e821c1df19c6b4136ed5febcp1@ENST00000509844
3.32e-113FFCP PHASE2:Hg19::chr5:56910048..56910074,+#_85ae4ea7e821c1df19c6b4136ed5febcp1@ENST00000509844
8.18e-113FFCP PHASE1:Hg19::chr4:176812842..176812866,-#_c3c57837823562e8fe504d9ae6407dd2p14@GPM6A
8.18e-113FFCP PHASE2:Hg19::chr4:176812842..176812866,-#_c3c57837823562e8fe504d9ae6407dd2p14@GPM6A
9.32e-113FFCP PHASE1:Hg19::chr5:63256975..63257005,-#_ae0e8627b778633c050a83d317737d40p1@HTR1A
9.32e-113FFCP PHASE2:Hg19::chr5:63256975..63257005,-#_ae0e8627b778633c050a83d317737d40p1@HTR1A
1.04e-112FFCP PHASE2:Hg19::chr11:133280516..133280530,-#_5dcd0fa8eebaca15a06256df968fa3cap@chr11:133280516..133280530, -
1.04e-112FFCP PHASE1:Hg19::chr11:133280516..133280530,-#_5dcd0fa8eebaca15a06256df968fa3cap@chr11:133280516..133280530, -


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