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UBERON:0002680

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Name:regional part of metencephalon
Namespace:FANTOM
Definition:"A regional part of brain that is part of a metencephalon [Obol]." [OBOL:automatic]
Xrefs:
links:

FMA:67942

NIF_GrossAnatomy:birnlex_1361
Synonyms: "anatomical structure of brain of epencephalon-2" EXACT [OBOL:automatic]
"anatomical structure of brain of metencephalon" EXACT [OBOL:automatic]
"biological structure of brain of epencephalon-2" EXACT [OBOL:automatic]
"biological structure of brain of metencephalon" EXACT [OBOL:automatic]
"brain anatomical structure of epencephalon-2" EXACT [OBOL:automatic]
"brain anatomical structure of metencephalon" EXACT [OBOL:automatic]
"brain biological structure of epencephalon-2" EXACT [OBOL:automatic]
"brain biological structure of metencephalon" EXACT [OBOL:automatic]
"epencephalon-2 anatomical structure of brain" EXACT [OBOL:automatic]
"epencephalon-2 biological structure of brain" EXACT [OBOL:automatic]
"epencephalon-2 brain anatomical structure" EXACT [OBOL:automatic]
"epencephalon-2 brain biological structure" EXACT [OBOL:automatic]
"epencephalon-2 neuraxis segment" EXACT [OBOL:automatic]
"epencephalon-2 regional part of brain" EXACT [OBOL:automatic]
"epencephalon-2 segment of brain" EXACT [OBOL:automatic]
"metencephalon anatomical structure of brain" EXACT [OBOL:automatic]
"metencephalon biological structure of brain" EXACT [OBOL:automatic]
"metencephalon brain anatomical structure" EXACT [OBOL:automatic]
"metencephalon brain biological structure" EXACT [OBOL:automatic]
"metencephalon neuraxis segment" EXACT [OBOL:automatic]
"metencephalon regional part of brain" EXACT [OBOL:automatic]
"metencephalon segment of brain" EXACT [OBOL:automatic]
"metencephalon subdivision" EXACT [FMA:67942]
"neuraxis segment of epencephalon-2" EXACT [OBOL:automatic]
"neuraxis segment of metencephalon" EXACT [OBOL:automatic]
"regional part of brain of epencephalon-2" EXACT [OBOL:automatic]
"regional part of brain of metencephalon" EXACT [OBOL:automatic]
"segment of brain of epencephalon-2" EXACT [OBOL:automatic]
"segment of brain of metencephalon" EXACT [OBOL:automatic]
"segment of metencephalon" EXACT [NIF_GrossAnatomy:birnlex_1361]
Alt_id: UBERON:NIF_GrossAnatomy_birnlex_1361-FMA_67942

Ontology association
Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.

link to ontology dataset
data


Parents

is_a:UBERON:0000477(anatomical cluster),UBERON:0002616(regional part of brain),UBERON:0010314(structure with developmental contribution from neural crest)
part_of:UBERON:0001895(metencephalon)



Children

is a:UBERON:0000988 (pons),UBERON:0002037 (cerebellum)

Ontology Tree: Loaded from BioPortal


FF samples
It includes FANTOM5 samples that overlay the Uberon ontology


Human (Homo sapiens)

... further results Mouse (Mus musculus)

... further results


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0002680 (regional part of metencephalon), sorted by p-values
Analyst: Hideya Kawaji

link to source dataset
human : data
mouse : data


P-valueFFCPShort description
4.91e-91FFCP PHASE1:Hg19::chr11:27742115..27742119,-#_5827581d21ab4b6e291ecfac0ee2e13fp17@BDNF
4.91e-91FFCP PHASE2:Hg19::chr11:27742115..27742119,-#_5827581d21ab4b6e291ecfac0ee2e13fp17@BDNF
1.37e-87FFCP PHASE2:Hg19::chr11:123448159..123448170,+#_691075566591f542a78745d8c40bbd6ap4@AB384137
1.37e-87FFCP PHASE1:Hg19::chr11:123448159..123448170,+#_691075566591f542a78745d8c40bbd6ap4@AB384137
1.37e-87FFCP PHASE1:Hg19::chr15:79724672..79724683,+#_691075566591f542a78745d8c40bbd6ap1@KIAA1024
1.37e-87FFCP PHASE1:Hg19::chr17:50236110..50236119,-#_691075566591f542a78745d8c40bbd6ap22@CA10
1.37e-87FFCP PHASE1:Hg19::chr17:72667462..72667471,+#_691075566591f542a78745d8c40bbd6ap11@RAB37
1.37e-87FFCP PHASE1:Hg19::chr17:72857611..72857619,-#_691075566591f542a78745d8c40bbd6ap@chr17:72857611..72857619, -
1.37e-87FFCP PHASE2:Hg19::chr9:135538143..135538152,-#_691075566591f542a78745d8c40bbd6ap2@CU680380
1.37e-87FFCP PHASE1:Hg19::chr6:72922728..72922737,+#_691075566591f542a78745d8c40bbd6ap29@RIMS1
1.37e-87FFCP PHASE1:Hg19::chr9:135538143..135538152,-#_691075566591f542a78745d8c40bbd6ap2@CU680380
1.37e-87FFCP PHASE2:Hg19::chr15:79724672..79724683,+#_691075566591f542a78745d8c40bbd6ap1@KIAA1024
1.37e-87FFCP PHASE2:Hg19::chr17:50236110..50236119,-#_691075566591f542a78745d8c40bbd6ap22@CA10
1.37e-87FFCP PHASE2:Hg19::chr17:72667462..72667471,+#_691075566591f542a78745d8c40bbd6ap11@RAB37
1.37e-87FFCP PHASE2:Hg19::chr17:72857611..72857619,-#_691075566591f542a78745d8c40bbd6ap@chr17:72857611..72857619, -
1.37e-87FFCP PHASE2:Hg19::chr6:72922728..72922737,+#_691075566591f542a78745d8c40bbd6ap29@RIMS1
3.19e-78FFCP PHASE2:Hg19::chr11:122733138..122733178,+#_737b8a37cd50ac2efeee3b652fd78764p3@CRTAM
3.19e-78FFCP PHASE1:Hg19::chr11:122733138..122733178,+#_737b8a37cd50ac2efeee3b652fd78764p3@CRTAM
3.19e-78FFCP PHASE2:Hg19::chr5:20575610..20575619,-#_737b8a37cd50ac2efeee3b652fd78764p11@CDH18
3.19e-78FFCP PHASE1:Hg19::chr5:20575610..20575619,-#_737b8a37cd50ac2efeee3b652fd78764p11@CDH18
2.16e-70FFCP PHASE2:Hg19::chr9:135457457..135457468,+#_7e3337643e31246586c71cec46e4e062p4@BARHL1
2.16e-70FFCP PHASE1:Hg19::chr9:135457457..135457468,+#_7e3337643e31246586c71cec46e4e062p4@BARHL1
2.58e-70FFCP PHASE1:Hg19::chr4:117873850..117873861,-#_ca02317aaf8eb5cc04d7ae03993bc0f8p@chr4:117873850..117873861, -
2.58e-70FFCP PHASE1:Hg19::chr17:72667518..72667529,+#_ca02317aaf8eb5cc04d7ae03993bc0f8p8@RAB37
2.58e-70FFCP PHASE1:Hg19::chr1:159842835..159842846,-#_ca02317aaf8eb5cc04d7ae03993bc0f8p1@ENST00000536764
2.58e-70FFCP PHASE1:Hg19::chr20:30616906..30616921,-#_ca02317aaf8eb5cc04d7ae03993bc0f8p@chr20:30616906..30616921, -
2.58e-70FFCP PHASE2:Hg19::chr1:159842835..159842846,-#_ca02317aaf8eb5cc04d7ae03993bc0f8p1@ENST00000536764
2.58e-70FFCP PHASE2:Hg19::chr20:30616906..30616921,-#_ca02317aaf8eb5cc04d7ae03993bc0f8p@chr20:30616906..30616921, -
2.58e-70FFCP PHASE2:Hg19::chr4:117873850..117873861,-#_ca02317aaf8eb5cc04d7ae03993bc0f8p@chr4:117873850..117873861, -
2.58e-70FFCP PHASE2:Hg19::chr17:72667518..72667529,+#_ca02317aaf8eb5cc04d7ae03993bc0f8p8@RAB37
3.09e-70FFCP PHASE2:Hg19::chr17:50235999..50236008,-#_29c1661b54557a10961c301ad5d38e28p21@CA10
3.09e-70FFCP PHASE2:Hg19::chr20:62795787..62795793,+#_29c1661b54557a10961c301ad5d38e28p8@MYT1
3.09e-70FFCP PHASE1:Hg19::chr17:50235999..50236008,-#_29c1661b54557a10961c301ad5d38e28p21@CA10
3.09e-70FFCP PHASE1:Hg19::chr20:62795787..62795793,+#_29c1661b54557a10961c301ad5d38e28p8@MYT1
9.93e-69FFCP PHASE1:Hg19::chr22:26565113..26565124,+#_9e2fad1a678a3bdbb1116c4bb4aee528p7@SEZ6L
9.93e-69FFCP PHASE2:Hg19::chr22:26565113..26565124,+#_9e2fad1a678a3bdbb1116c4bb4aee528p7@SEZ6L
3.04e-66FFCP PHASE1:Hg19::chr2:72381655..72381673,-#_691e356e515347d87d1e0230c44a6615p@chr2:72381655..72381673, -
3.04e-66FFCP PHASE2:Hg19::chr2:72381655..72381673,-#_691e356e515347d87d1e0230c44a6615p@chr2:72381655..72381673, -
3.75e-66FFCP PHASE1:Hg19::chr6:146350267..146350276,+#_25bcc9108f32d57c85d5dd566f02fe40p10@GRM1
3.75e-66FFCP PHASE1:Hg19::chr6:152884494..152884503,-#_25bcc9108f32d57c85d5dd566f02fe40p@chr6:152884494..152884503, -
3.75e-66FFCP PHASE1:Hg19::chr6:31334809..31334819,-#_25bcc9108f32d57c85d5dd566f02fe40p1@DHFRP2
3.75e-66FFCP PHASE1:Hg19::chr6:34004237..34004248,-#_25bcc9108f32d57c85d5dd566f02fe40p@chr6:34004237..34004248, -
3.75e-66FFCP PHASE1:Hg19::chr6:34041419..34041429,-#_25bcc9108f32d57c85d5dd566f02fe40p@chr6:34041419..34041429, -
3.75e-66FFCP PHASE1:Hg19::chr6:34046479..34046486,-#_25bcc9108f32d57c85d5dd566f02fe40p@chr6:34046479..34046486, -
3.75e-66FFCP PHASE1:Hg19::chr6:70647902..70647917,+#_25bcc9108f32d57c85d5dd566f02fe40p@chr6:70647902..70647917, +
3.75e-66FFCP PHASE1:Hg19::chr6:72922523..72922536,+#_25bcc9108f32d57c85d5dd566f02fe40p26@RIMS1
3.75e-66FFCP PHASE1:Hg19::chr6:72922559..72922568,+#_25bcc9108f32d57c85d5dd566f02fe40p28@RIMS1
3.75e-66FFCP PHASE1:Hg19::chr6:72922572..72922582,+#_25bcc9108f32d57c85d5dd566f02fe40p30@RIMS1
3.75e-66FFCP PHASE1:Hg19::chr6:72922664..72922672,+#_25bcc9108f32d57c85d5dd566f02fe40p31@RIMS1
3.75e-66FFCP PHASE2:Hg19::chr12:113682304..113682315,+#_25bcc9108f32d57c85d5dd566f02fe40p17@TPCN1
3.75e-66FFCP PHASE1:Hg19::chr7:119913819..119913824,-#_25bcc9108f32d57c85d5dd566f02fe40p@chr7:119913819..119913824, -
3.75e-66FFCP PHASE1:Hg19::chr7:1277107..1277145,-#_25bcc9108f32d57c85d5dd566f02fe40p@chr7:1277107..1277145, -
3.75e-66FFCP PHASE1:Hg19::chr7:128518888..128518897,-#_25bcc9108f32d57c85d5dd566f02fe40p@chr7:128518888..128518897, -
3.75e-66FFCP PHASE1:Hg19::chr7:128520567..128520578,-#_25bcc9108f32d57c85d5dd566f02fe40p@chr7:128520567..128520578, -
3.75e-66FFCP PHASE1:Hg19::chr7:14025135..14025147,-#_25bcc9108f32d57c85d5dd566f02fe40p42@ETV1
3.75e-66FFCP PHASE1:Hg19::chr7:155302128..155302137,-#_25bcc9108f32d57c85d5dd566f02fe40p@chr7:155302128..155302137, -
3.75e-66FFCP PHASE2:Hg19::chr2:202634440..202634472,-#_25bcc9108f32d57c85d5dd566f02fe40p@chr2:202634440..202634472, -
3.75e-66FFCP PHASE1:Hg19::chr7:29162047..29162055,+#_25bcc9108f32d57c85d5dd566f02fe40p@chr7:29162047..29162055, +
3.75e-66FFCP PHASE1:Hg19::chr7:29237354..29237369,+#_25bcc9108f32d57c85d5dd566f02fe40p32@CHN2
3.75e-66FFCP PHASE1:Hg19::chr7:31569075..31569083,+#_25bcc9108f32d57c85d5dd566f02fe40p3@CCDC129
3.75e-66FFCP PHASE1:Hg19::chr7:44308399..44308433,-#_25bcc9108f32d57c85d5dd566f02fe40p17@CAMK2B
3.75e-66FFCP PHASE1:Hg19::chr7:49815147..49815153,+#_25bcc9108f32d57c85d5dd566f02fe40p5@VWC2
3.75e-66FFCP PHASE2:Hg19::chr12:72667119..72667130,+#_25bcc9108f32d57c85d5dd566f02fe40p16@TRHDE
3.75e-66FFCP PHASE2:Hg19::chr12:78430875..78430887,+#_25bcc9108f32d57c85d5dd566f02fe40p1@AB384547
3.75e-66FFCP PHASE1:Hg19::chr7:99995188..99995194,+#_25bcc9108f32d57c85d5dd566f02fe40p@chr7:99995188..99995194, +
3.75e-66FFCP PHASE2:Hg19::chr2:39116996..39117003,+#_25bcc9108f32d57c85d5dd566f02fe40p7@ARHGEF33
3.75e-66FFCP PHASE2:Hg19::chr13:100623731..100623747,-#_25bcc9108f32d57c85d5dd566f02fe40p8@ZIC5
3.75e-66FFCP PHASE2:Hg19::chr13:100633107..100633110,+#_25bcc9108f32d57c85d5dd566f02fe40p7@AK298232
3.75e-66FFCP PHASE2:Hg19::chr13:100633194..100633202,+#_25bcc9108f32d57c85d5dd566f02fe40p6@AK298232
3.75e-66FFCP PHASE2:Hg19::chr2:39892073..39892078,+#_25bcc9108f32d57c85d5dd566f02fe40p25@TMEM178
3.75e-66FFCP PHASE2:Hg19::chr2:39894333..39894353,-#_25bcc9108f32d57c85d5dd566f02fe40p@chr2:39894333..39894353, -
3.75e-66FFCP PHASE2:Hg19::chr13:113624941..113624962,-#_25bcc9108f32d57c85d5dd566f02fe40-, p@chr13:113624941..113624962
3.75e-66FFCP PHASE2:Hg19::chr13:42792979..42793012,+#_25bcc9108f32d57c85d5dd566f02fe40p@chr13:42792979..42793012, +
3.75e-66FFCP PHASE1:Hg19::chr8:140666585..140666599,-#_25bcc9108f32d57c85d5dd566f02fe40p@chr8:140666585..140666599, -
3.75e-66FFCP PHASE1:Hg19::chr21:47268058..47268079,+#_25bcc9108f32d57c85d5dd566f02fe40p5@PCBP3
3.75e-66FFCP PHASE1:Hg19::chr21:47314143..47314154,-#_25bcc9108f32d57c85d5dd566f02fe40p@chr21:47314143..47314154, -
3.75e-66FFCP PHASE1:Hg19::chr22:17891551..17891560,+#_25bcc9108f32d57c85d5dd566f02fe40p@chr22:17891551..17891560, +
3.75e-66FFCP PHASE1:Hg19::chr22:31968960..31968972,+#_25bcc9108f32d57c85d5dd566f02fe40p13@SFI1
3.75e-66FFCP PHASE1:Hg19::chr22:32022290..32022297,-#_25bcc9108f32d57c85d5dd566f02fe40p30@PISD
3.75e-66FFCP PHASE1:Hg19::chr22:51137783..51137794,+#_25bcc9108f32d57c85d5dd566f02fe40p@chr22:51137783..51137794, +
3.75e-66FFCP PHASE1:Hg19::chr2:149835072..149835078,+#_25bcc9108f32d57c85d5dd566f02fe40p39@KIF5C
3.75e-66FFCP PHASE1:Hg19::chr2:155565839..155565848,+#_25bcc9108f32d57c85d5dd566f02fe40p12@KCNJ3
3.75e-66FFCP PHASE1:Hg19::chr2:202634440..202634472,-#_25bcc9108f32d57c85d5dd566f02fe40p@chr2:202634440..202634472, -
3.75e-66FFCP PHASE1:Hg19::chr2:39116996..39117003,+#_25bcc9108f32d57c85d5dd566f02fe40p7@ARHGEF33
3.75e-66FFCP PHASE1:Hg19::chr2:39892073..39892078,+#_25bcc9108f32d57c85d5dd566f02fe40p25@TMEM178
3.75e-66FFCP PHASE1:Hg19::chr2:39894333..39894353,-#_25bcc9108f32d57c85d5dd566f02fe40p@chr2:39894333..39894353, -
3.75e-66FFCP PHASE1:Hg19::chr3:147114396..147114403,-#_25bcc9108f32d57c85d5dd566f02fe40p23@ZIC4
3.75e-66FFCP PHASE1:Hg19::chr3:147139238..147139247,+#_25bcc9108f32d57c85d5dd566f02fe40p26@ZIC1
3.75e-66FFCP PHASE1:Hg19::chr3:147141170..147141181,-#_25bcc9108f32d57c85d5dd566f02fe40p@chr3:147141170..147141181, -
3.75e-66FFCP PHASE1:Hg19::chr3:22062741..22062742,-#_25bcc9108f32d57c85d5dd566f02fe40p@chr3:22062741..22062742, -
3.75e-66FFCP PHASE1:Hg19::chr3:22108225..22108233,-#_25bcc9108f32d57c85d5dd566f02fe40p@chr3:22108225..22108233, -
3.75e-66FFCP PHASE1:Hg19::chr3:22108366..22108373,-#_25bcc9108f32d57c85d5dd566f02fe40p@chr3:22108366..22108373, -
3.75e-66FFCP PHASE1:Hg19::chr3:22108417..22108426,-#_25bcc9108f32d57c85d5dd566f02fe40p@chr3:22108417..22108426, -
3.75e-66FFCP PHASE1:Hg19::chr3:9165885..9165918,+#_25bcc9108f32d57c85d5dd566f02fe40p@chr3:9165885..9165918, +
3.75e-66FFCP PHASE1:Hg19::chr4:114254131..114254143,+#_25bcc9108f32d57c85d5dd566f02fe40p35@ANK2
3.75e-66FFCP PHASE1:Hg19::chr4:117873869..117873879,-#_25bcc9108f32d57c85d5dd566f02fe40p@chr4:117873869..117873879, -
3.75e-66FFCP PHASE1:Hg19::chr4:166678786..166678822,-#_25bcc9108f32d57c85d5dd566f02fe40p@chr4:166678786..166678822, -
3.75e-66FFCP PHASE1:Hg19::chr4:2257102..2257110,-#_25bcc9108f32d57c85d5dd566f02fe40p6@MXD4
3.75e-66FFCP PHASE1:Hg19::chr4:3287626..3287633,+#_25bcc9108f32d57c85d5dd566f02fe40p@chr4:3287626..3287633, +
3.75e-66FFCP PHASE1:Hg19::chr4:718943..718952,+#_25bcc9108f32d57c85d5dd566f02fe40p10@PCGF3