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UBERON:0002780

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Name:regional part of forebrain
Namespace:FANTOM
Definition:"A regional part of brain that is part of a forebrain [Obol]." [OBOL:automatic]
Xrefs:
links:

FMA:61996

NIF_GrossAnatomy:birnlex_1677
Synonyms: "anatomical structure of brain of forebrain" EXACT [OBOL:automatic]
"biological structure of brain of forebrain" EXACT [OBOL:automatic]
"brain anatomical structure of forebrain" EXACT [OBOL:automatic]
"brain biological structure of forebrain" EXACT [OBOL:automatic]
"forebrain anatomical structure of brain" EXACT [OBOL:automatic]
"forebrain biological structure of brain" EXACT [OBOL:automatic]
"forebrain brain anatomical structure" EXACT [OBOL:automatic]
"forebrain brain biological structure" EXACT [OBOL:automatic]
"forebrain neuraxis segment" EXACT [OBOL:automatic]
"forebrain regional part of brain" EXACT [OBOL:automatic]
"forebrain segment" EXACT [FMA:61996]
"forebrain segment of brain" EXACT [OBOL:automatic]
"neuraxis segment of forebrain" EXACT [OBOL:automatic]
"regional part of brain of forebrain" EXACT [OBOL:automatic]
"segment of brain of forebrain" EXACT [OBOL:automatic]
"segment of forebrain" EXACT [NIF_GrossAnatomy:birnlex_1677]
Alt_id: UBERON:NIF_GrossAnatomy_birnlex_1677-FMA_61996

Ontology association
Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.

link to ontology dataset
data


Parents

is_a:UBERON:0002616(regional part of brain)
part_of:UBERON:0001890(forebrain)



Children

is a:UBERON:0001893 (telencephalon),UBERON:0001894 (diencephalon),UBERON:0002743 (basal forebrain),UBERON:0002784 (regional part of diencephalon),UBERON:0002791 (regional part of telencephalon),UBERON:0006098 (basal nuclear complex)

Ontology Tree: Loaded from BioPortal


FF samples
It includes FANTOM5 samples that overlay the Uberon ontology


Human (Homo sapiens)

... further results Mouse (Mus musculus)

... further results


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0002780 (regional part of forebrain), sorted by p-values
Analyst: Hideya Kawaji

link to source dataset
human : data
mouse : data


P-valueFFCPShort description
6.11e-141FFCP PHASE1:Hg19::chr5:89977201..89977236,+#_bb3e0c092361a6f46c4ccb79166db5fcp@chr5:89977201..89977236, +
6.11e-141FFCP PHASE2:Hg19::chr5:89977201..89977236,+#_bb3e0c092361a6f46c4ccb79166db5fcp@chr5:89977201..89977236, +
2.38e-133FFCP PHASE2:Hg19::chr18:55019840..55019850,+#_53cefab13af2f92cff1404dfdc5e41dfp5@ST8SIA3
2.38e-133FFCP PHASE1:Hg19::chr18:55019840..55019850,+#_53cefab13af2f92cff1404dfdc5e41dfp5@ST8SIA3
6.8e-130FFCP PHASE2:Hg19::chr6:12717031..12717057,+#_883e41aecb00c17a9b96d25ae9b93906p5@PHACTR1
6.8e-130FFCP PHASE1:Hg19::chr6:12717031..12717057,+#_883e41aecb00c17a9b96d25ae9b93906p5@PHACTR1
2.27e-128FFCP PHASE1:Hg19::chr6:12716992..12717005,+#_0c71e1f193d43aa5bccc6a9581de8df0p3@PHACTR1
2.27e-128FFCP PHASE2:Hg19::chr6:12716992..12717005,+#_0c71e1f193d43aa5bccc6a9581de8df0p3@PHACTR1
6.39e-128FFCP PHASE1:Hg19::chr10:104178839..104178855,-#_9a941ee9ade52fa052ca10ae271dd45ep6@PSD
6.39e-128FFCP PHASE2:Hg19::chr10:104178839..104178855,-#_9a941ee9ade52fa052ca10ae271dd45ep6@PSD
7.77e-125FFCP PHASE2:Hg19::chr20:61806320..61806344,+#_851641970241f91cf0c875a8bddfa4eap@chr20:61806320..61806344, +
7.77e-125FFCP PHASE1:Hg19::chr20:61806320..61806344,+#_851641970241f91cf0c875a8bddfa4eap@chr20:61806320..61806344, +
3.82e-123FFCP PHASE1:Hg19::chr19:35633957..35633969,+#_616106d5fdd8b60e35031dfb84cc2ff7p2@FXYD7
3.82e-123FFCP PHASE2:Hg19::chr19:35633957..35633969,+#_616106d5fdd8b60e35031dfb84cc2ff7p2@FXYD7
1.09e-121FFCP PHASE2:Hg19::chr6:108487289..108487302,+#_ab66587f5788ebf1edd98f14aad9c019p1@NR2E1
1.09e-121FFCP PHASE1:Hg19::chr6:108487289..108487302,+#_ab66587f5788ebf1edd98f14aad9c019p1@NR2E1
2.87e-118FFCP PHASE1:Hg19::chr11:133402410..133402434,-#_b39b53c139ac68ca4e9f8870c59bc742p5@OPCML
2.87e-118FFCP PHASE2:Hg19::chr11:133402410..133402434,-#_b39b53c139ac68ca4e9f8870c59bc742p5@OPCML
7.25e-118FFCP PHASE1:Hg19::chr7:154002369..154002398,+#_48464271d13bde94561655f30f3be36fp4@DPP6
7.25e-118FFCP PHASE2:Hg19::chr7:154002369..154002398,+#_48464271d13bde94561655f30f3be36fp4@DPP6
8.87e-118FFCP PHASE1:Hg19::chrX:13835312..13835321,-#_12e01344722bff7e2877cde722b37fe8p9@GPM6B
8.87e-118FFCP PHASE2:Hg19::chrX:13835312..13835321,-#_12e01344722bff7e2877cde722b37fe8p9@GPM6B
1.66e-117FFCP PHASE2:Hg19::chr4:6514469..6514483,-#_88f279f0ad5106cf0ca7370aa1ae410bp@chr4:6514469..6514483, -
1.66e-117FFCP PHASE1:Hg19::chr4:6514469..6514483,-#_88f279f0ad5106cf0ca7370aa1ae410bp@chr4:6514469..6514483, -
2.75e-117FFCP PHASE2:Hg19::chr12:14133429..14133438,-#_678b92b378c95eab565dbf3394aa4f51p3@GRIN2B
2.75e-117FFCP PHASE1:Hg19::chr12:14133429..14133438,-#_678b92b378c95eab565dbf3394aa4f51p3@GRIN2B
2.82e-116FFCP PHASE2:Hg19::chr6:12717819..12717851,+#_4d66c9bb26e8fad3796a1ae60e6674eap4@PHACTR1
2.82e-116FFCP PHASE1:Hg19::chr6:12717819..12717851,+#_4d66c9bb26e8fad3796a1ae60e6674eap4@PHACTR1
2.93e-116FFCP PHASE2:Hg19::chr8:104831416..104831427,+#_823d06c094038e6be173f926016016d4p8@RIMS2
2.93e-116FFCP PHASE1:Hg19::chr8:104831416..104831427,+#_823d06c094038e6be173f926016016d4p8@RIMS2
5.58e-116FFCP PHASE1:Hg19::chr1:70033108..70033121,+#_d22c024a1ce73582599674a9f4528864p8@LRRC7
5.58e-116FFCP PHASE2:Hg19::chr1:70033108..70033121,+#_d22c024a1ce73582599674a9f4528864p8@LRRC7
6.52e-116FFCP PHASE2:Hg19::chr1:35391249..35391269,-#_290f0afc897587a80bac33f78b05b5cep4@DLGAP3
6.52e-116FFCP PHASE1:Hg19::chr1:35391249..35391269,-#_290f0afc897587a80bac33f78b05b5cep4@DLGAP3
6.61e-116FFCP PHASE1:Hg19::chr6:12717801..12717817,+#_e5920efc645524d3f78e1a5f36f20beep8@PHACTR1
6.61e-116FFCP PHASE2:Hg19::chr6:12717801..12717817,+#_e5920efc645524d3f78e1a5f36f20beep8@PHACTR1
5.28e-115FFCP PHASE2:Hg19::chr7:111424462..111424496,-#_bcfd0a7ecce05c81816c747e238dc95fp3@DOCK4
5.28e-115FFCP PHASE1:Hg19::chr7:111424462..111424496,-#_bcfd0a7ecce05c81816c747e238dc95fp3@DOCK4
5.97e-115FFCP PHASE1:Hg19::chr5:89936560..89936586,+#_fb9ebde650c940d62f668105733ef31bp3@GPR98
5.97e-115FFCP PHASE2:Hg19::chr5:89936560..89936586,+#_fb9ebde650c940d62f668105733ef31bp3@GPR98
1.02e-114FFCP PHASE1:Hg19::chr1:35391417..35391476,-#_397eabc18ca05b1e82c18da5a93caed3p2@DLGAP3
1.02e-114FFCP PHASE2:Hg19::chr1:35391417..35391476,-#_397eabc18ca05b1e82c18da5a93caed3p2@DLGAP3
1.06e-114FFCP PHASE2:Hg19::chr16:14280513..14280524,+#_c19b051e04680c6a47cb68284f33c6eap5@MKL2
1.06e-114FFCP PHASE1:Hg19::chr16:14280513..14280524,+#_c19b051e04680c6a47cb68284f33c6eap5@MKL2
8.42e-114FFCP PHASE2:Hg19::chr6:97753454..97753523,+#_f338abc3b73f5d127b940d7d630c9187p1@uc003ppd.1
8.42e-114FFCP PHASE1:Hg19::chr6:97753454..97753523,+#_f338abc3b73f5d127b940d7d630c9187p1@uc003ppd.1
3.53e-113FFCP PHASE1:Hg19::chr1:70035018..70035044,+#_d8041a0483dc3995a8fb6fb1f5ddebfap@chr1:70035018..70035044, +
3.53e-113FFCP PHASE2:Hg19::chr1:70035018..70035044,+#_d8041a0483dc3995a8fb6fb1f5ddebfap@chr1:70035018..70035044, +
5.22e-113FFCP PHASE1:Hg19::chr4:46392101..46392112,-#_67c3fb504f4882c93a6063da0aae4af7p6@GABRA2
5.22e-113FFCP PHASE2:Hg19::chr4:46392101..46392112,-#_67c3fb504f4882c93a6063da0aae4af7p6@GABRA2
5.23e-113FFCP PHASE1:Hg19::chr12:120242250..120242273,-#_f943cb9db6e815035326f93462dee195p6@CIT
5.23e-113FFCP PHASE2:Hg19::chr12:120242250..120242273,-#_f943cb9db6e815035326f93462dee195p6@CIT
1.08e-112FFCP PHASE1:Hg19::chr19:49016319..49016405,-#_54918fdd883d081b950aac0927c0bb55p2@LMTK3
1.08e-112FFCP PHASE2:Hg19::chr19:49016319..49016405,-#_54918fdd883d081b950aac0927c0bb55p2@LMTK3
1.26e-112FFCP PHASE1:Hg19::chrX:13835472..13835483,-#_2063de52055c969cade52f4241584e4fp10@GPM6B
1.26e-112FFCP PHASE2:Hg19::chrX:13835472..13835483,-#_2063de52055c969cade52f4241584e4fp10@GPM6B
1.39e-112FFCP PHASE2:Hg19::chr5:80255907..80255942,+#_427023e8222ac5b0c68a0ac0446b57cfp@chr5:80255907..80255942, +
1.39e-112FFCP PHASE1:Hg19::chr5:80255907..80255942,+#_427023e8222ac5b0c68a0ac0446b57cfp@chr5:80255907..80255942, +
1.42e-112FFCP PHASE2:Hg19::chr17:61194578..61194599,+#_1ae437e3a9269f6501f55b120b40028dp@chr17:61194578..61194599, +
1.42e-112FFCP PHASE1:Hg19::chr17:61194578..61194599,+#_1ae437e3a9269f6501f55b120b40028dp@chr17:61194578..61194599, +
1.66e-112FFCP PHASE1:Hg19::chr5:89977181..89977199,+#_7a13259503c4fbf4fb9984e4b4148ca8p@chr5:89977181..89977199, +
1.66e-112FFCP PHASE2:Hg19::chr5:89977181..89977199,+#_7a13259503c4fbf4fb9984e4b4148ca8p@chr5:89977181..89977199, +
6.89e-112FFCP PHASE1:Hg19::chr7:94843638..94843650,-#_eb1ba38ce5e5de2ee418777742748d0cp1@ENST00000417881
6.89e-112FFCP PHASE2:Hg19::chr7:94843638..94843650,-#_eb1ba38ce5e5de2ee418777742748d0cp1@ENST00000417881
7.85e-112FFCP PHASE2:Hg19::chr7:154002341..154002355,+#_9c4844885c0be94cee42a05800748200p6@DPP6
7.85e-112FFCP PHASE1:Hg19::chr7:154002341..154002355,+#_9c4844885c0be94cee42a05800748200p6@DPP6
1.02e-111FFCP PHASE1:Hg19::chr5:27038708..27038730,-#_32a855aaf31babc110be11a7d2acb99dp2@CDH9
1.02e-111FFCP PHASE2:Hg19::chr5:27038708..27038730,-#_32a855aaf31babc110be11a7d2acb99dp2@CDH9
1.42e-111FFCP PHASE2:Hg19::chr2:3134361..3134374,-#_a6734a59734ae4ee924fbb2cf316590bp@chr2:3134361..3134374, -
1.42e-111FFCP PHASE1:Hg19::chr2:3134361..3134374,-#_a6734a59734ae4ee924fbb2cf316590bp@chr2:3134361..3134374, -
1.94e-111FFCP PHASE1:Hg19::chr6:155538132..155538147,+#_ea42db352a7cb45a33de06e1908b295ap3@TIAM2
1.94e-111FFCP PHASE2:Hg19::chr6:155538132..155538147,+#_ea42db352a7cb45a33de06e1908b295ap3@TIAM2
3.18e-111FFCP PHASE1:Hg19::chr3:124103620..124103704,+#_bc52a119b7ca265d17c4efd1727b29d2p1@KALRN
3.18e-111FFCP PHASE2:Hg19::chr3:124103620..124103704,+#_bc52a119b7ca265d17c4efd1727b29d2p1@KALRN
4.18e-111FFCP PHASE1:Hg19::chr1:177134053..177134069,-#_5833ea0f8581577dab17ce713d31eca2p4@ASTN1
4.18e-111FFCP PHASE2:Hg19::chr1:177134053..177134069,-#_5833ea0f8581577dab17ce713d31eca2p4@ASTN1
5.69e-111FFCP PHASE2:Hg19::chr11:132982177..132982181,-#_1eb49ab3535e69a550ce5e0194f015d7p@chr11:132982177..132982181, -
5.69e-111FFCP PHASE1:Hg19::chr11:132982177..132982181,-#_1eb49ab3535e69a550ce5e0194f015d7p@chr11:132982177..132982181, -
7.54e-111FFCP PHASE2:Hg19::chr8:63161215..63161235,+#_14d780526ecd38295c95e7fbfd2ee861p5@NKAIN3
7.54e-111FFCP PHASE1:Hg19::chr8:63161215..63161235,+#_14d780526ecd38295c95e7fbfd2ee861p5@NKAIN3
1.27e-110FFCP PHASE2:Hg19::chr12:99548462..99548482,-#_e73e8b07f1f0635e8c8d2965df79dfe4p9@ANKS1B
1.27e-110FFCP PHASE1:Hg19::chr12:99548462..99548482,-#_e73e8b07f1f0635e8c8d2965df79dfe4p9@ANKS1B
1.38e-110FFCP PHASE1:Hg19::chr15:80735246..80735321,+#_dc6cbf30516c6216c08764e2a29586e1p3@ARNT2
1.38e-110FFCP PHASE2:Hg19::chr15:80735246..80735321,+#_dc6cbf30516c6216c08764e2a29586e1p3@ARNT2
2.12e-110FFCP PHASE1:Hg19::chr20:1791316..1791339,-#_3e0cbabaf214f64620486f8e27871cefp@chr20:1791316..1791339, -
2.12e-110FFCP PHASE2:Hg19::chr20:1791316..1791339,-#_3e0cbabaf214f64620486f8e27871cef-, p@chr20:1791316..1791339
2.27e-110FFCP PHASE2:Hg19::chr9:112629781..112629806,+#_30735919c820fbed52b89ab812435c64p14@PALM2-AKAP2
2.27e-110FFCP PHASE1:Hg19::chr9:112629781..112629806,+#_30735919c820fbed52b89ab812435c64p14@PALM2-AKAP2
3.45e-110FFCP PHASE2:Hg19::chrX:13835398..13835429,-#_9d7ce64479a73e35a5f5143bae3903e5p6@GPM6B
3.45e-110FFCP PHASE1:Hg19::chrX:13835398..13835429,-#_9d7ce64479a73e35a5f5143bae3903e5p6@GPM6B
4.23e-110FFCP PHASE2:Hg19::chr2:74612644..74612670,+#_554916425bbaaaf9e77622fa98c3e6e7p1@ENST00000412957
4.23e-110FFCP PHASE1:Hg19::chr2:74612644..74612670,+#_554916425bbaaaf9e77622fa98c3e6e7p1@ENST00000412957
5.12e-110FFCP PHASE1:Hg19::chr12:99548342..99548354,-#_74e7ca1c54eaa288a5c71dc3ad61e4eep7@ANKS1B
5.12e-110FFCP PHASE2:Hg19::chr12:99548342..99548354,-#_74e7ca1c54eaa288a5c71dc3ad61e4eep7@ANKS1B
7.19e-110FFCP PHASE2:Hg19::chr20:1791288..1791304,-#_bc435cfa4d063b87cc86ad58c963dab4p@chr20:1791288..1791304, -
7.19e-110FFCP PHASE1:Hg19::chr20:1791288..1791304,-#_bc435cfa4d063b87cc86ad58c963dab4p@chr20:1791288..1791304, -
9.49e-110FFCP PHASE1:Hg19::chr21:43917145..43917190,-#_35bcde3fd1dc9c8d4f47cf9e5fb2cc56p@chr21:43917145..43917190, -
9.49e-110FFCP PHASE2:Hg19::chr21:43917145..43917190,-#_35bcde3fd1dc9c8d4f47cf9e5fb2cc56p@chr21:43917145..43917190, -
1.01e-109FFCP PHASE1:Hg19::chr6:155538093..155538109,+#_e13651add36fc436e5f996cb114f8529p2@TIAM2
1.01e-109FFCP PHASE2:Hg19::chr6:155538093..155538109,+#_e13651add36fc436e5f996cb114f8529p2@TIAM2