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UBERON:0003051

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Name:ear vesicle
Namespace:FANTOM
Definition:"The saccular invagination of ectoderm from which the vertebrate inner ear develops[BTO]. Epithelial sac present beside the fifth rhombomere; forms the semicircular canals dorsally and the otolith organs ventrally, and houses the acoustico-vestibular sensory epithelia (maculae) of hair cells[ZFA]. epithelial sac of invaginated ectoderm formed from the otic placode that gives rise to the structures of the inner ear[MP]" [BTO:0002661, MP:0009806, Wikipedia:Otic_vesicle, ZFIN:curator]
Xrefs:
links:

AAO:0011080
BTO:0002661
EHDAA2:0001342
EMAPA:16669
[ Gray40.png Gray40.png]
[ 200px-Gray40.png 200px-Gray40.png]
ncithesaurus:Otic_Vesicle
SCTID:308792006
TAO:0000051
VHOG:0001148
XAO:0000006

ZFA:0000051
Synonyms: "auditory vesicle" RELATED [BTO:0002661]
"otic vesicle" EXACT []
"otocyst" RELATED []
"OV" RELATED []
Alt_id: UBERON:0004373
UBERON:XAO_0000006-ZFA_0000051
Subset: vertebrate_core

Ontology association
Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.

link to ontology dataset
data


Parents

is_a:UBERON:0005291(embryonic tissue),UBERON:0007497(developing epithelial placode),UBERON:0010314(structure with developmental contribution from neural crest),UBERON:0010371(ecto-epithelium)
develops_from:UBERON:0009123(otic cup)
part_of:UBERON:0000922(embryo),UBERON:0000924(ectoderm)



Children

develops from:UBERON:0001846 (internal ear),UBERON:0012175 (acoustico-facial VII-VIII ganglion complex)
part of:UBERON:0005641 (otocyst epithelium)

Ontology Tree: Loaded from BioPortal


FF samples
It includes FANTOM5 samples that overlay the Uberon ontology




Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0003051 (ear vesicle), sorted by p-values
Analyst: Hideya Kawaji

link to source dataset
human : data
mouse : data


P-valueFFCPShort description
1.87e-86FFCP PHASE2:Mm9::chr12:13572961..13572974,+#_75fc3970308be340c9f348f4c3017776p@chr12:13572961..13572974, +
1.87e-86FFCP PHASE1:Mm9::chr15:89215306..89215315,+#_75fc3970308be340c9f348f4c3017776p@chr15:89215306..89215315, +
1.87e-86FFCP PHASE2:Mm9::chr7:29733825..29733837,-#_75fc3970308be340c9f348f4c3017776p@chr7:29733825..29733837, -
1.87e-86FFCP PHASE2:Mm9::chr1:182528371..182528385,+#_75fc3970308be340c9f348f4c3017776p@chr1:182528371..182528385, +
1.87e-86FFCP PHASE1:Mm9::chr10:80806020..80806031,-#_75fc3970308be340c9f348f4c3017776p3@Gipc3
1.87e-86FFCP PHASE1:Mm9::chr16:93971325..93971337,-#_75fc3970308be340c9f348f4c3017776p@chr16:93971325..93971337, -
1.87e-86FFCP PHASE1:Mm9::chr2:136942131..136942142,-#_75fc3970308be340c9f348f4c3017776p6@Jag1
1.87e-86FFCP PHASE2:Mm9::chr17:31335869..31335899,-#_75fc3970308be340c9f348f4c3017776p1@Tmprss3
1.87e-86FFCP PHASE1:Mm9::chr3:154693281..154693317,-#_75fc3970308be340c9f348f4c3017776p@chr3:154693281..154693317, -
1.87e-86FFCP PHASE1:Mm9::chr10:97109753..97109764,+#_75fc3970308be340c9f348f4c3017776p3@Epyc
1.87e-86FFCP PHASE2:Mm9::chr9:42207375..42207384,-#_75fc3970308be340c9f348f4c3017776p@chr9:42207375..42207384, -
1.87e-86FFCP PHASE1:Mm9::chr19:4140290..4140321,+#_75fc3970308be340c9f348f4c3017776p2@Gpr152
1.87e-86FFCP PHASE1:Mm9::chr10:107349378..107349390,-#_75fc3970308be340c9f348f4c3017776p1@Otogl
1.87e-86FFCP PHASE1:Mm9::chr7:109052262..109052291,-#_75fc3970308be340c9f348f4c3017776p1@Tomt
1.87e-86FFCP PHASE2:Mm9::chr15:89215306..89215315,+#_75fc3970308be340c9f348f4c3017776p@chr15:89215306..89215315, +
1.87e-86FFCP PHASE2:Mm9::chr17:13983160..13983167,+#_75fc3970308be340c9f348f4c3017776p@chr17:13983160..13983167, +
1.87e-86FFCP PHASE2:Mm9::chr3:81012915..81012923,+#_75fc3970308be340c9f348f4c3017776p@chr3:81012915..81012923, +
1.87e-86FFCP PHASE1:Mm9::chr5:144115382..144115389,+#_75fc3970308be340c9f348f4c3017776p@chr5:144115382..144115389, +
1.87e-86FFCP PHASE2:Mm9::chr2:53464168..53464175,+#_75fc3970308be340c9f348f4c3017776p@chr2:53464168..53464175, +
1.87e-86FFCP PHASE1:Mm9::chr1:43454162..43454170,-#_75fc3970308be340c9f348f4c3017776p@chr1:43454162..43454170, -
1.87e-86FFCP PHASE1:Mm9::chr9:42207983..42207995,-#_75fc3970308be340c9f348f4c3017776p3@Tecta
1.87e-86FFCP PHASE1:Mm9::chr19:10536797..10536802,-#_75fc3970308be340c9f348f4c3017776p@chr19:10536797..10536802, -
1.87e-86FFCP PHASE2:Mm9::chr13:48087761..48087775,-#_75fc3970308be340c9f348f4c3017776p@chr13:48087761..48087775, -
1.87e-86FFCP PHASE1:Mm9::chr4:151505798..151505818,-#_75fc3970308be340c9f348f4c3017776p21@Espn
1.87e-86FFCP PHASE2:Mm9::chr13:43699188..43699216,+#_75fc3970308be340c9f348f4c3017776p@chr13:43699188..43699216, +
1.87e-86FFCP PHASE1:Mm9::chr6:29428397..29428407,-#_75fc3970308be340c9f348f4c3017776p@chr6:29428397..29428407, -
1.87e-86FFCP PHASE1:Mm9::chr17:31335869..31335899,-#_75fc3970308be340c9f348f4c3017776p1@Tmprss3
1.87e-86FFCP PHASE1:Mm9::chr5:30710403..30710406,-#_75fc3970308be340c9f348f4c3017776p10@Otof
1.87e-86FFCP PHASE2:Mm9::chr11:4689837..4689845,-#_75fc3970308be340c9f348f4c3017776p@chr11:4689837..4689845, -
1.87e-86FFCP PHASE2:Mm9::chr13:76964459..76964469,+#_75fc3970308be340c9f348f4c3017776p15@Mctp1
1.87e-86FFCP PHASE1:Mm9::chr8:13414289..13414295,+#_75fc3970308be340c9f348f4c3017776p@chr8:13414289..13414295, +
1.87e-86FFCP PHASE1:Mm9::chr1:182528388..182528403,+#_75fc3970308be340c9f348f4c3017776p@chr1:182528388..182528403, +
1.87e-86FFCP PHASE2:Mm9::chr4:115556939..115556945,+#_75fc3970308be340c9f348f4c3017776p4@Kncn
1.87e-86FFCP PHASE1:Mm9::chr9:42207375..42207384,-#_75fc3970308be340c9f348f4c3017776p@chr9:42207375..42207384, -
1.87e-86FFCP PHASE1:Mm9::chr18:66033526..66033539,-#_75fc3970308be340c9f348f4c3017776p@chr18:66033526..66033539, -
1.87e-86FFCP PHASE2:Mm9::chr19:22767090..22767099,+#_75fc3970308be340c9f348f4c3017776p18@Trpm3
1.87e-86FFCP PHASE2:Mm9::chr1:172843796..172843799,-#_75fc3970308be340c9f348f4c3017776p@chr1:172843796..172843799, -
1.87e-86FFCP PHASE2:Mm9::chr4:130461150..130461185,+#_75fc3970308be340c9f348f4c3017776p@chr4:130461150..130461185, +
1.87e-86FFCP PHASE1:Mm9::chr3:35012397..35012405,+#_75fc3970308be340c9f348f4c3017776p@chr3:35012397..35012405, +
1.87e-86FFCP PHASE2:Mm9::chr9:42207998..42208009,-#_75fc3970308be340c9f348f4c3017776p6@Tecta
1.87e-86FFCP PHASE1:Mm9::chr5:68423014..68423037,+#_75fc3970308be340c9f348f4c3017776p1@Grxcr1
1.87e-86FFCP PHASE1:Mm9::chr8:94180607..94180619,-#_75fc3970308be340c9f348f4c3017776p@chr8:94180607..94180619, -
1.87e-86FFCP PHASE1:Mm9::chr1:172843796..172843799,-#_75fc3970308be340c9f348f4c3017776p@chr1:172843796..172843799, -
1.87e-86FFCP PHASE2:Mm9::chr14:47293496..47293510,-#_75fc3970308be340c9f348f4c3017776p@chr14:47293496..47293510, -
1.87e-86FFCP PHASE1:Mm9::chr14:102297728..102297742,+#_75fc3970308be340c9f348f4c3017776p@chr14:102297728..102297742, +
1.87e-86FFCP PHASE1:Mm9::chr1:78523144..78523177,+#_75fc3970308be340c9f348f4c3017776p@chr1:78523144..78523177, +
1.87e-86FFCP PHASE2:Mm9::chr9:92087926..92087938,+#_75fc3970308be340c9f348f4c3017776p2@Plscr5
1.87e-86FFCP PHASE2:Mm9::chr5:147854240..147854249,-#_75fc3970308be340c9f348f4c3017776p@chr5:147854240..147854249, -
1.87e-86FFCP PHASE1:Mm9::chr2:14685072..14685084,+#_75fc3970308be340c9f348f4c3017776p41@Cacnb2
1.87e-86FFCP PHASE1:Mm9::chr12:77084875..77084885,+#_75fc3970308be340c9f348f4c3017776p@chr12:77084875..77084885, +
1.87e-86FFCP PHASE2:Mm9::chr10:107349418..107349423,-#_75fc3970308be340c9f348f4c3017776p5@Otogl
1.87e-86FFCP PHASE2:Mm9::chr6:86746562..86746579,-#_75fc3970308be340c9f348f4c3017776p@chr6:86746562..86746579, -
1.87e-86FFCP PHASE2:Mm9::chr9:42207792..42207805,-#_75fc3970308be340c9f348f4c3017776p11@Tecta
1.87e-86FFCP PHASE1:Mm9::chr11:89702580..89702593,-#_75fc3970308be340c9f348f4c3017776p@chr11:89702580..89702593, -
1.87e-86FFCP PHASE2:Mm9::chr19:21028739..21028785,-#_75fc3970308be340c9f348f4c3017776p1@Tmc1
1.87e-86FFCP PHASE1:Mm9::chr14:20649897..20649907,+#_75fc3970308be340c9f348f4c3017776p@chr14:20649897..20649907, +
1.87e-86FFCP PHASE2:Mm9::chr12:77084875..77084885,+#_75fc3970308be340c9f348f4c3017776p@chr12:77084875..77084885, +
1.87e-86FFCP PHASE2:Mm9::chr3:154459184..154459195,+#_75fc3970308be340c9f348f4c3017776p@chr3:154459184..154459195, +
1.87e-86FFCP PHASE2:Mm9::chr9:41495920..41495928,-#_75fc3970308be340c9f348f4c3017776p@chr9:41495920..41495928, -
1.87e-86FFCP PHASE2:Mm9::chr14:102297747..102297765,+#_75fc3970308be340c9f348f4c3017776p@chr14:102297747..102297765, +
1.87e-86FFCP PHASE2:Mm9::chr16:96494788..96494801,+#_75fc3970308be340c9f348f4c3017776p12@B3galt5
1.87e-86FFCP PHASE1:Mm9::chr16:45693840..45693856,-#_75fc3970308be340c9f348f4c3017776p1@Tmprss7
1.87e-86FFCP PHASE1:Mm9::chr14:63099970..63099980,-#_75fc3970308be340c9f348f4c3017776p@chr14:63099970..63099980, -
1.87e-86FFCP PHASE2:Mm9::chr19:55255206..55255223,+#_75fc3970308be340c9f348f4c3017776p1@Tectb
1.87e-86FFCP PHASE1:Mm9::chr6:30619443..30619450,-#_75fc3970308be340c9f348f4c3017776p13@Tsga14
1.87e-86FFCP PHASE2:Mm9::chr1:93218682..93218691,+#_75fc3970308be340c9f348f4c3017776p2@Espnl
1.87e-86FFCP PHASE2:Mm9::chr7:133957514..133957529,+#_75fc3970308be340c9f348f4c3017776p@chr7:133957514..133957529, +
1.87e-86FFCP PHASE1:Mm9::chr10:107156949..107156956,-#_75fc3970308be340c9f348f4c3017776p3@Ptprq
1.87e-86FFCP PHASE2:Mm9::chr4:101908153..101908163,+#_75fc3970308be340c9f348f4c3017776p@chr4:101908153..101908163, +
1.87e-86FFCP PHASE2:Mm9::chr12:13508015..13508019,+#_75fc3970308be340c9f348f4c3017776p@chr12:13508015..13508019, +
1.87e-86FFCP PHASE2:Mm9::chr10:97109753..97109764,+#_75fc3970308be340c9f348f4c3017776p3@Epyc
1.87e-86FFCP PHASE2:Mm9::chr13:78322370..78322376,-#_75fc3970308be340c9f348f4c3017776p4@uc007rhb.1
1.87e-86FFCP PHASE2:Mm9::chr5:3909290..3909299,+#_75fc3970308be340c9f348f4c3017776p@chr5:3909290..3909299, +
1.87e-86FFCP PHASE2:Mm9::chr13:37195838..37195870,-#_75fc3970308be340c9f348f4c3017776p@chr13:37195838..37195870, -
1.87e-86FFCP PHASE1:Mm9::chr18:81327205..81327211,+#_75fc3970308be340c9f348f4c3017776p@chr18:81327205..81327211, +
1.87e-86FFCP PHASE1:Mm9::chr1:93218682..93218691,+#_75fc3970308be340c9f348f4c3017776p2@Espnl
1.87e-86FFCP PHASE2:Mm9::chr8:13414289..13414295,+#_75fc3970308be340c9f348f4c3017776p@chr8:13414289..13414295, +
1.87e-86FFCP PHASE1:Mm9::chr17:27252925..27252939,+#_75fc3970308be340c9f348f4c3017776p@chr17:27252925..27252939, +
1.87e-86FFCP PHASE2:Mm9::chr2:9811162..9811171,-#_75fc3970308be340c9f348f4c3017776p2@9230102O04Rik
1.87e-86FFCP PHASE2:Mm9::chr16:93971357..93971363,-#_75fc3970308be340c9f348f4c3017776p@chr16:93971357..93971363, -
1.87e-86FFCP PHASE2:Mm9::chr11:4689776..4689785,-#_75fc3970308be340c9f348f4c3017776p@chr11:4689776..4689785, -
1.87e-86FFCP PHASE1:Mm9::chr11:114603036..114603048,+#_75fc3970308be340c9f348f4c3017776p@chr11:114603036..114603048, +
1.87e-86FFCP PHASE1:Mm9::chr12:13508046..13508055,+#_75fc3970308be340c9f348f4c3017776p@chr12:13508046..13508055, +
1.87e-86FFCP PHASE1:Mm9::chr13:78257518..78257522,+#_75fc3970308be340c9f348f4c3017776p@chr13:78257518..78257522, +
1.87e-86FFCP PHASE1:Mm9::chr14:47293496..47293510,-#_75fc3970308be340c9f348f4c3017776p@chr14:47293496..47293510, -
1.87e-86FFCP PHASE1:Mm9::chr3:69811606..69811616,+#_75fc3970308be340c9f348f4c3017776p2@Otol1
1.87e-86FFCP PHASE2:Mm9::chr18:59222033..59222043,+#_75fc3970308be340c9f348f4c3017776p7@A730017C20Rik
1.87e-86FFCP PHASE1:Mm9::chr18:59222033..59222043,+#_75fc3970308be340c9f348f4c3017776p7@A730017C20Rik
1.87e-86FFCP PHASE2:Mm9::chr13:58283583..58283607,-#_75fc3970308be340c9f348f4c3017776p@chr13:58283583..58283607, -
1.87e-86FFCP PHASE1:Mm9::chr17:13983160..13983167,+#_75fc3970308be340c9f348f4c3017776p@chr17:13983160..13983167, +
1.87e-86FFCP PHASE1:Mm9::chr2:152453066..152453075,-#_75fc3970308be340c9f348f4c3017776p@chr2:152453066..152453075, -
1.87e-86FFCP PHASE1:Mm9::chr3:31585340..31585360,+#_75fc3970308be340c9f348f4c3017776p@chr3:31585340..31585360, +
1.87e-86FFCP PHASE1:Mm9::chr11:102123554..102123566,+#_75fc3970308be340c9f348f4c3017776p4@BC030867
1.87e-86FFCP PHASE2:Mm9::chr3:35012397..35012405,+#_75fc3970308be340c9f348f4c3017776p@chr3:35012397..35012405, +
1.87e-86FFCP PHASE1:Mm9::chr15:89215319..89215330,+#_75fc3970308be340c9f348f4c3017776p@chr15:89215319..89215330, +
1.87e-86FFCP PHASE1:Mm9::chr14:31283072..31283081,-#_75fc3970308be340c9f348f4c3017776p@chr14:31283072..31283081, -
1.87e-86FFCP PHASE2:Mm9::chr5:68423014..68423037,+#_75fc3970308be340c9f348f4c3017776p1@Grxcr1
1.87e-86FFCP PHASE2:Mm9::chr1:182528388..182528403,+#_75fc3970308be340c9f348f4c3017776p@chr1:182528388..182528403, +
1.87e-86FFCP PHASE1:Mm9::chr10:80806047..80806059,-#_75fc3970308be340c9f348f4c3017776p4@Gipc3
1.87e-86FFCP PHASE1:Mm9::chr16:93971357..93971363,-#_75fc3970308be340c9f348f4c3017776p@chr16:93971357..93971363, -










Property "Property value" (as page type) with input value "UBPROP:0000001 "Epithelial sac present beside the fifth rhombomere; forms the semicircular canals dorsally and the otolith organs ventrally, and houses the acoustico-vestibular sensory epithelia (maculae) of hair cells. Kimmel et al, 1995. (Also see Anatomical Atlas entry for ear by T. Whitfield.)[TAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.