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UBERON:0003071

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Name:eye primordium
Namespace:FANTOM
Definition:"Portion of tissue that is part of the anterior neural keel and will form the optic vesicle[ZFA]. A paired ectodermal placode that becomes invaginated to form the embryonic lens vesicles." [GO:0046619, ZFA:0000570]
Xrefs:
links:

AAO:0011038
EFO:0003541
EHDAA2:0004431
TAO:0000570
XAO:0000227
XAO:0004090

ZFA:0000570
Synonyms: "eye anlage" RELATED [XAO:0000227]
"eye field" RELATED []
"eye placode" EXACT [OBOL:automatic]
"occular primordium" EXACT []
"ocular primordium" EXACT []
"optic field" RELATED []
"optic placode" EXACT [GO:0046619]
"optic placode of camera-type eye" EXACT [GO:0046619, UBERON:cjm]
"optic primordium" EXACT []
Comments:AO notes: TODO - check that GO's optic placode is the same as ZFA's eye primordium; we may want to have separate term for ocular primordium precursor. XAO has both optic field and eye primordium
Alt_id: UBERON:0005060
UBERON:XAO_0000227-ZFA_0000570

Ontology association
Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.

link to ontology dataset
data


Parents

is_a:UBERON:0005291(embryonic tissue),UBERON:0007497(developing epithelial placode),UBERON:0010371(ecto-epithelium)
develops_from:UBERON:0003056(pre-chordal neural plate)
part_of:UBERON:0003056(pre-chordal neural plate)



Children

develops from:UBERON:0004128 (optic vesicle),UBERON:0010312 (immature eye)

Ontology Tree: Loaded from BioPortal


FF samples
It includes FANTOM5 samples that overlay the Uberon ontology




Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0003071 (eye primordium), sorted by p-values
Analyst: Hideya Kawaji

link to source dataset
human : data
mouse : data


P-valueFFCPShort description
1.31e-86FFCP PHASE2:Mm9::chr4:133799669..133799683,+#_b362d8d269176b10751de4e3ba5bb9fdp1@E130218I03Rik
1.31e-86FFCP PHASE2:Mm9::chr16:21743134..21743139,-#_b362d8d269176b10751de4e3ba5bb9fdp@chr16:21743134..21743139, -
1.31e-86FFCP PHASE2:Mm9::chr11:77532283..77532316,-#_b362d8d269176b10751de4e3ba5bb9fdp@chr11:77532283..77532316, -
1.31e-86FFCP PHASE2:Mm9::chr3:129525389..129525400,-#_b362d8d269176b10751de4e3ba5bb9fdp@chr3:129525389..129525400, -
1.31e-86FFCP PHASE2:Mm9::chr11:77532391..77532408,-#_b362d8d269176b10751de4e3ba5bb9fdp@chr11:77532391..77532408, -
1.31e-86FFCP PHASE2:Mm9::chr2:90827760..90827769,+#_b362d8d269176b10751de4e3ba5bb9fdp6@Celf1
1.31e-86FFCP PHASE1:Mm9::chr17:31818106..31818119,+#_b362d8d269176b10751de4e3ba5bb9fdp@chr17:31818106..31818119, +
1.31e-86FFCP PHASE1:Mm9::chr11:77532283..77532316,-#_b362d8d269176b10751de4e3ba5bb9fdp@chr11:77532283..77532316, -
1.31e-86FFCP PHASE2:Mm9::chr11:3622192..3622225,-#_b362d8d269176b10751de4e3ba5bb9fdp3@Osbp2
1.31e-86FFCP PHASE2:Mm9::chr17:31817987..31818013,+#_b362d8d269176b10751de4e3ba5bb9fdp@chr17:31817987..31818013, +
1.31e-86FFCP PHASE2:Mm9::chr10:67364011..67364018,-#_b362d8d269176b10751de4e3ba5bb9fdp5@Zfp365
1.31e-86FFCP PHASE2:Mm9::chr10:127668442..127668453,+#_b362d8d269176b10751de4e3ba5bb9fdp@chr10:127668442..127668453, +
1.31e-86FFCP PHASE2:Mm9::chr14:118451218..118451221,-#_b362d8d269176b10751de4e3ba5bb9fdp4@Dct
1.31e-86FFCP PHASE1:Mm9::chr14:118451218..118451221,-#_b362d8d269176b10751de4e3ba5bb9fdp4@Dct
1.31e-86FFCP PHASE2:Mm9::chr9:89697580..89697585,-#_b362d8d269176b10751de4e3ba5bb9fdp1@Mir184
1.31e-86FFCP PHASE1:Mm9::chr17:31815126..31815139,-#_b362d8d269176b10751de4e3ba5bb9fdp@chr17:31815126..31815139, -
1.31e-86FFCP PHASE2:Mm9::chr17:31818263..31818276,+#_b362d8d269176b10751de4e3ba5bb9fdp@chr17:31818263..31818276, +
1.31e-86FFCP PHASE1:Mm9::chr9:89697580..89697585,-#_b362d8d269176b10751de4e3ba5bb9fdp1@Mir184
1.31e-86FFCP PHASE1:Mm9::chr4:133799669..133799683,+#_b362d8d269176b10751de4e3ba5bb9fdp1@E130218I03Rik
1.31e-86FFCP PHASE2:Mm9::chr17:31818106..31818119,+#_b362d8d269176b10751de4e3ba5bb9fdp@chr17:31818106..31818119, +
1.31e-86FFCP PHASE1:Mm9::chr3:129525389..129525400,-#_b362d8d269176b10751de4e3ba5bb9fdp@chr3:129525389..129525400, -
1.31e-86FFCP PHASE1:Mm9::chr10:67364011..67364018,-#_b362d8d269176b10751de4e3ba5bb9fdp5@Zfp365
1.31e-86FFCP PHASE1:Mm9::chr16:21743134..21743139,-#_b362d8d269176b10751de4e3ba5bb9fd-, p@chr16:21743134..21743139
1.31e-86FFCP PHASE2:Mm9::chr17:31815126..31815139,-#_b362d8d269176b10751de4e3ba5bb9fdp@chr17:31815126..31815139, -
1.31e-86FFCP PHASE1:Mm9::chr11:3622163..3622187,-#_b362d8d269176b10751de4e3ba5bb9fdp8@Osbp2
1.31e-86FFCP PHASE1:Mm9::chr2:90827760..90827769,+#_b362d8d269176b10751de4e3ba5bb9fdp6@Celf1
1.31e-86FFCP PHASE1:Mm9::chr10:127668442..127668453,+#_b362d8d269176b10751de4e3ba5bb9fdp@chr10:127668442..127668453, +
1.31e-86FFCP PHASE1:Mm9::chr17:31817987..31818013,+#_b362d8d269176b10751de4e3ba5bb9fdp@chr17:31817987..31818013, +
1.31e-86FFCP PHASE2:Mm9::chr11:3622163..3622187,-#_b362d8d269176b10751de4e3ba5bb9fdp8@Osbp2
1.31e-86FFCP PHASE1:Mm9::chr17:31818263..31818276,+#_b362d8d269176b10751de4e3ba5bb9fdp@chr17:31818263..31818276, +
1.31e-86FFCP PHASE1:Mm9::chr11:77532391..77532408,-#_b362d8d269176b10751de4e3ba5bb9fdp@chr11:77532391..77532408, -
1.31e-86FFCP PHASE1:Mm9::chr11:3622192..3622225,-#_b362d8d269176b10751de4e3ba5bb9fdp3@Osbp2
2.3e-78FFCP PHASE1:Mm9::chr10:127668637..127668650,+#_239f7de7c5b23215d6b8c9012026cb52p3@LOC100504989, p3@Timeless
2.3e-78FFCP PHASE1:Mm9::chr7:64675015..64675028,+#_239f7de7c5b23215d6b8c9012026cb52p@chr7:64675015..64675028, +
2.3e-78FFCP PHASE2:Mm9::chr10:127668637..127668650,+#_239f7de7c5b23215d6b8c9012026cb52p3@LOC100504989, p3@Timeless
2.3e-78FFCP PHASE2:Mm9::chr7:64675015..64675028,+#_239f7de7c5b23215d6b8c9012026cb52p@chr7:64675015..64675028, +
2.82e-78FFCP PHASE2:Mm9::chr6:97891135..97891147,+#_3564d323f27a6fc14886f5fb92fcf06bp@chr6:97891135..97891147, +
2.82e-78FFCP PHASE1:Mm9::chr2:105509100..105509107,+#_3564d323f27a6fc14886f5fb92fcf06bp6@Pax6
2.82e-78FFCP PHASE1:Mm9::chr6:97891135..97891147,+#_3564d323f27a6fc14886f5fb92fcf06bp@chr6:97891135..97891147, +
2.82e-78FFCP PHASE2:Mm9::chr2:105509100..105509107,+#_3564d323f27a6fc14886f5fb92fcf06bp6@Pax6
3.46e-78FFCP PHASE2:Mm9::chr14:49498256..49498278,+#_a11b6832c4d80cc09d26e770677077e3p1@4933429O19Rik
3.46e-78FFCP PHASE1:Mm9::chr14:49498256..49498278,+#_a11b6832c4d80cc09d26e770677077e3p1@4933429O19Rik
4.97e-77FFCP PHASE2:Mm9::chr1:65147224..65147236,-#_8dc99c3d4a72fec688f6a91251b2ad66p@chr1:65147224..65147236, -
4.97e-77FFCP PHASE2:Mm9::chr2:93906955..93906973,-#_8dc99c3d4a72fec688f6a91251b2ad66p2@Hsd17b12
4.97e-77FFCP PHASE1:Mm9::chr4:19208009..19208054,+#_8dc99c3d4a72fec688f6a91251b2ad66p1@Cngb3
4.97e-77FFCP PHASE1:Mm9::chr1:152166537..152166579,+#_8dc99c3d4a72fec688f6a91251b2ad66p1@Pdc
4.97e-77FFCP PHASE2:Mm9::chr1:38092602..38092616,+#_8dc99c3d4a72fec688f6a91251b2ad66p@chr1:38092602..38092616, +
4.97e-77FFCP PHASE2:Mm9::chr8:77582172..77582183,+#_8dc99c3d4a72fec688f6a91251b2ad66p@chr8:77582172..77582183, +
4.97e-77FFCP PHASE2:Mm9::chr3:34488839..34488876,+#_8dc99c3d4a72fec688f6a91251b2ad66p1@ENSMUST00000173365
4.97e-77FFCP PHASE1:Mm9::chr14:52730585..52730607,+#_8dc99c3d4a72fec688f6a91251b2ad66p1@Rpgrip1
4.97e-77FFCP PHASE2:Mm9::chr6:85969237..85969247,+#_8dc99c3d4a72fec688f6a91251b2ad66p@chr6:85969237..85969247, +
4.97e-77FFCP PHASE1:Mm9::chr17:31816514..31816526,+#_8dc99c3d4a72fec688f6a91251b2ad66p@chr17:31816514..31816526, +
4.97e-77FFCP PHASE1:Mm9::chr6:115162924..115162933,+#_8dc99c3d4a72fec688f6a91251b2ad66p@chr6:115162924..115162933, +
4.97e-77FFCP PHASE1:Mm9::chr14:49501519..49501530,-#_8dc99c3d4a72fec688f6a91251b2ad66p@chr14:49501519..49501530, -
4.97e-77FFCP PHASE1:Mm9::chr11:95705150..95705170,+#_8dc99c3d4a72fec688f6a91251b2ad66p3@Gngt2
4.97e-77FFCP PHASE2:Mm9::chr14:52730585..52730607,+#_8dc99c3d4a72fec688f6a91251b2ad66p1@Rpgrip1
4.97e-77FFCP PHASE1:Mm9::chr5:112686483..112686494,+#_8dc99c3d4a72fec688f6a91251b2ad66p@chr5:112686483..112686494, +
4.97e-77FFCP PHASE2:Mm9::chr10:127668799..127668810,+#_8dc99c3d4a72fec688f6a91251b2ad66p5@LOC100504989, p5@Timeless
4.97e-77FFCP PHASE1:Mm9::chr5:112696408..112696421,-#_8dc99c3d4a72fec688f6a91251b2ad66p@chr5:112696408..112696421, -
4.97e-77FFCP PHASE2:Mm9::chr17:31817947..31817965,+#_8dc99c3d4a72fec688f6a91251b2ad66p@chr17:31817947..31817965, +
4.97e-77FFCP PHASE2:Mm9::chr6:115162924..115162933,+#_8dc99c3d4a72fec688f6a91251b2ad66p@chr6:115162924..115162933, +
4.97e-77FFCP PHASE1:Mm9::chr17:31818629..31818644,+#_8dc99c3d4a72fec688f6a91251b2ad66p@chr17:31818629..31818644, +
4.97e-77FFCP PHASE2:Mm9::chr17:31816514..31816526,+#_8dc99c3d4a72fec688f6a91251b2ad66p@chr17:31816514..31816526, +
4.97e-77FFCP PHASE1:Mm9::chr5:113504891..113504916,-#_8dc99c3d4a72fec688f6a91251b2ad66p@chr5:113504891..113504916, -
4.97e-77FFCP PHASE2:Mm9::chr5:112698505..112698537,-#_8dc99c3d4a72fec688f6a91251b2ad66p@chr5:112698505..112698537, -
4.97e-77FFCP PHASE2:Mm9::chr4:19208009..19208054,+#_8dc99c3d4a72fec688f6a91251b2ad66p1@Cngb3
4.97e-77FFCP PHASE1:Mm9::chr8:77582194..77582219,+#_8dc99c3d4a72fec688f6a91251b2ad66p@chr8:77582194..77582219, +
4.97e-77FFCP PHASE2:Mm9::chr1:38092538..38092550,+#_8dc99c3d4a72fec688f6a91251b2ad66p@chr1:38092538..38092550, +
4.97e-77FFCP PHASE2:Mm9::chr5:112692580..112692595,+#_8dc99c3d4a72fec688f6a91251b2ad66p@chr5:112692580..112692595, +
4.97e-77FFCP PHASE1:Mm9::chr3:129525435..129525448,-#_8dc99c3d4a72fec688f6a91251b2ad66p2@Rrh
4.97e-77FFCP PHASE2:Mm9::chr7:28282354..28282365,+#_8dc99c3d4a72fec688f6a91251b2ad66p@chr7:28282354..28282365, +
4.97e-77FFCP PHASE2:Mm9::chr5:112690963..112690994,+#_8dc99c3d4a72fec688f6a91251b2ad66p@chr5:112690963..112690994, +
4.97e-77FFCP PHASE1:Mm9::chr7:29477874..29477889,+#_8dc99c3d4a72fec688f6a91251b2ad66p6@Fbxo27
4.97e-77FFCP PHASE1:Mm9::chr5:112675556..112675574,-#_8dc99c3d4a72fec688f6a91251b2ad66p@chr5:112675556..112675574, -
4.97e-77FFCP PHASE1:Mm9::chr5:112691047..112691066,+#_8dc99c3d4a72fec688f6a91251b2ad66p@chr5:112691047..112691066, +
4.97e-77FFCP PHASE1:Mm9::chr10:93761330..93761358,-#_8dc99c3d4a72fec688f6a91251b2ad66p1@Gm4792
4.97e-77FFCP PHASE2:Mm9::chr3:129525405..129525428,-#_8dc99c3d4a72fec688f6a91251b2ad66p1@Rrh
4.97e-77FFCP PHASE2:Mm9::chr17:31818629..31818644,+#_8dc99c3d4a72fec688f6a91251b2ad66p@chr17:31818629..31818644, +
4.97e-77FFCP PHASE1:Mm9::chr5:112690729..112690741,+#_8dc99c3d4a72fec688f6a91251b2ad66p@chr5:112690729..112690741, +
4.97e-77FFCP PHASE1:Mm9::chr17:31816584..31816600,+#_8dc99c3d4a72fec688f6a91251b2ad66p@chr17:31816584..31816600, +
4.97e-77FFCP PHASE1:Mm9::chr9:107964319..107964338,-#_8dc99c3d4a72fec688f6a91251b2ad66p11@Rnf123
4.97e-77FFCP PHASE2:Mm9::chr5:112691047..112691066,+#_8dc99c3d4a72fec688f6a91251b2ad66p@chr5:112691047..112691066, +
4.97e-77FFCP PHASE1:Mm9::chr1:65147201..65147212,-#_8dc99c3d4a72fec688f6a91251b2ad66p@chr1:65147201..65147212, -
4.97e-77FFCP PHASE1:Mm9::chr10:127668686..127668697,+#_8dc99c3d4a72fec688f6a91251b2ad66p4@LOC100504989, p4@Timeless
4.97e-77FFCP PHASE1:Mm9::chr5:113507470..113507483,-#_8dc99c3d4a72fec688f6a91251b2ad66p@chr5:113507470..113507483, -
4.97e-77FFCP PHASE2:Mm9::chr15:36655026..36655032,+#_8dc99c3d4a72fec688f6a91251b2ad66p@chr15:36655026..36655032, +
4.97e-77FFCP PHASE2:Mm9::chr5:112686483..112686494,+#_8dc99c3d4a72fec688f6a91251b2ad66p@chr5:112686483..112686494, +
4.97e-77FFCP PHASE1:Mm9::chr17:31818215..31818239,-#_8dc99c3d4a72fec688f6a91251b2ad66p@chr17:31818215..31818239, -
4.97e-77FFCP PHASE1:Mm9::chr5:112690636..112690656,+#_8dc99c3d4a72fec688f6a91251b2ad66p@chr5:112690636..112690656, +
4.97e-77FFCP PHASE2:Mm9::chr5:113504891..113504916,-#_8dc99c3d4a72fec688f6a91251b2ad66p@chr5:113504891..113504916, -
4.97e-77FFCP PHASE1:Mm9::chr14:35413322..35413333,-#_8dc99c3d4a72fec688f6a91251b2ad66p1@Opn4
4.97e-77FFCP PHASE2:Mm9::chr9:107964319..107964338,-#_8dc99c3d4a72fec688f6a91251b2ad66p11@Rnf123
4.97e-77FFCP PHASE1:Mm9::chr5:112698505..112698537,-#_8dc99c3d4a72fec688f6a91251b2ad66p@chr5:112698505..112698537, -
4.97e-77FFCP PHASE2:Mm9::chr5:113507470..113507483,-#_8dc99c3d4a72fec688f6a91251b2ad66p@chr5:113507470..113507483, -
4.97e-77FFCP PHASE1:Mm9::chr5:112681470..112681483,-#_8dc99c3d4a72fec688f6a91251b2ad66p@chr5:112681470..112681483, -
4.97e-77FFCP PHASE2:Mm9::chr10:127668480..127668491,+#_8dc99c3d4a72fec688f6a91251b2ad66p@chr10:127668480..127668491, +
4.97e-77FFCP PHASE2:Mm9::chr17:31816584..31816600,+#_8dc99c3d4a72fec688f6a91251b2ad66p@chr17:31816584..31816600, +
4.97e-77FFCP PHASE1:Mm9::chr5:113506190..113506202,-#_8dc99c3d4a72fec688f6a91251b2ad66p@chr5:113506190..113506202, -
4.97e-77FFCP PHASE2:Mm9::chr8:77582194..77582219,+#_8dc99c3d4a72fec688f6a91251b2ad66p@chr8:77582194..77582219, +
4.97e-77FFCP PHASE2:Mm9::chr16:56204438..56204451,+#_8dc99c3d4a72fec688f6a91251b2ad66p1@Impg2