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UBERON:0003075

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Name:neural plate
Namespace:FANTOM
Definition:"A region of embryonic ectodermal cells that lie directly above the notochord. During neurulation, they change shape and produce an infolding of the neural plate (the neural fold) that then seals to form the neural tube[XAO]. The earliest recognizable dorsal ectodermal primordium of the central nervous system present near the end of gastrulation before infolding to form the neural keel; consists of a thickened pseudostratified epithelium[ZFA]" [ISBN:0815318960, OMD:neural+plate, Wikipedia:Neural_plate, ZFIN:curator]
Xrefs:
links:

AAO:0011072
BTO:0001765
EHDAA:346
EHDAA:902
EMAPA:16095
EMAPA:16527
EMAPA:16756
[ Neural_Crest.png Neural_Crest.png]
ncithesaurus:Neural_Plate
RETIRED_EHDAA2:0001252
TAO:0000132
VHOG:0000068
XAO:0000249

ZFA:0000132
Synonyms: "lamina neuralis" RELATED LATIN [Wikipedia:Neural_plate]
"presumptive central nervous system" RELATED []
Alt_id: UBERON:XAO_0000249-ZFA_0000132
Subset: uberon_slim
vertebrate_core

Ontology association
Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.

link to ontology dataset
data


Parents

is_a:UBERON:0005291(embryonic tissue),UBERON:0007497(developing epithelial placode),UBERON:0010371(ecto-epithelium),UBERON:0016879(future central nervous system)
develops_from:UBERON:0002346(neurectoderm),UBERON:0007284(presumptive neural plate)
part_of:UBERON:0000922(embryo),UBERON:0002346(neurectoderm)



Children

develops from:UBERON:0002342 (neural crest),UBERON:0007135 (neural keel)
part of:UBERON:0003056 (pre-chordal neural plate),UBERON:0003057 (chordal neural plate),UBERON:0005061 (neural groove)

Ontology Tree: Loaded from BioPortal


FF samples
It includes FANTOM5 samples that overlay the Uberon ontology




Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0003075 (neural plate), sorted by p-values
Analyst: Hideya Kawaji

link to source dataset
human : data
mouse : data


P-valueFFCPShort description
9.11e-109FFCP PHASE1:Hg19::chr5:11588907..11588967,-#_adda4f6031bc39e99890946d58843526p3@CTNND2
9.11e-109FFCP PHASE2:Hg19::chr5:11588907..11588967,-#_adda4f6031bc39e99890946d58843526p3@CTNND2
3.26e-108FFCP PHASE1:Hg19::chr11:31839488..31839515,-#_851fda54f8583ed73da1e7cf4f8c2378p3@PAX6
3.26e-108FFCP PHASE2:Hg19::chr11:31839488..31839515,-#_851fda54f8583ed73da1e7cf4f8c2378p3@PAX6
7.37e-104FFCP PHASE2:Hg19::chr17:54230819..54230848,+#_691164c45449f3b4cd16a18fc56fc1eep1@ANKFN1
7.37e-104FFCP PHASE1:Hg19::chr17:54230819..54230848,+#_691164c45449f3b4cd16a18fc56fc1eep1@ANKFN1
2.38e-100FFCP PHASE1:Hg19::chr2:74612644..74612670,+#_7f51f75134b74aa09b41e972ad7b5109p1@ENST00000412957
2.38e-100FFCP PHASE2:Hg19::chr2:74612644..74612670,+#_7f51f75134b74aa09b41e972ad7b5109p1@ENST00000412957
3.23e-100FFCP PHASE1:Hg19::chr5:87439352..87439386,-#_f974b5c1b3fbc4ce766b04e504fb109fp@chr5:87439352..87439386, -
3.23e-100FFCP PHASE2:Hg19::chr5:87439352..87439386,-#_f974b5c1b3fbc4ce766b04e504fb109fp@chr5:87439352..87439386, -
1.2e-98FFCP PHASE1:Hg19::chr12:106976678..106976708,+#_48da69992f7a883496c95f17af51898dp2@RFX4
1.2e-98FFCP PHASE2:Hg19::chr12:106976678..106976708,+#_48da69992f7a883496c95f17af51898dp2@RFX4
1.54e-98FFCP PHASE2:Hg19::chr5:11384884..11384916,-#_cadab8b439004de6f88aa89c3346f9f0p8@CTNND2
1.54e-98FFCP PHASE1:Hg19::chr5:11384884..11384916,-#_cadab8b439004de6f88aa89c3346f9f0p8@CTNND2
2.06e-98FFCP PHASE1:Hg19::chr2:50201220..50201261,-#_bc19733dc6f4d880aa153c277eeb06dbp3@NRXN1
2.06e-98FFCP PHASE2:Hg19::chr2:50201220..50201261,-#_bc19733dc6f4d880aa153c277eeb06dbp3@NRXN1
4.02e-98FFCP PHASE1:Hg19::chr8:18541544..18541592,-#_93d4d061e38a73f4b22558b3e8b4707bp2@PSD3
4.02e-98FFCP PHASE2:Hg19::chr8:18541544..18541592,-#_93d4d061e38a73f4b22558b3e8b4707bp2@PSD3
4.6e-98FFCP PHASE2:Hg19::chr18:32398296..32398318,+#_34a01792ba7b26ca746f75d834d3d508p7@DTNA
4.6e-98FFCP PHASE1:Hg19::chr18:32398296..32398318,+#_34a01792ba7b26ca746f75d834d3d508p7@DTNA
9.29e-98FFCP PHASE1:Hg19::chr11:62475005..62475041,-#_cb0684b43718275b277948a4672c9e9cp6@BSCL2
9.29e-98FFCP PHASE2:Hg19::chr11:62475005..62475041,-#_cb0684b43718275b277948a4672c9e9cp6@BSCL2
2.26e-97FFCP PHASE1:Hg19::chr5:146314142..146314146,-#_a13c17713c9cf092b3740d522cef15a1-, p@chr5:146314142..146314146
2.26e-97FFCP PHASE2:Hg19::chr5:146314142..146314146,-#_a13c17713c9cf092b3740d522cef15a1p@chr5:146314142..146314146, -
1.06e-96FFCP PHASE2:Hg19::chr4:165305086..165305179,-#_4d32b1a76d5121947bebdfa3c715c798p2@MARCH1
1.06e-96FFCP PHASE1:Hg19::chr4:165305086..165305179,-#_4d32b1a76d5121947bebdfa3c715c798p2@MARCH1
1.15e-96FFCP PHASE1:Hg19::chr17:36760961..36760976,-#_bee718be99e7dd6d1f225753d7fa2994p2@SRCIN1
1.15e-96FFCP PHASE2:Hg19::chr17:36760961..36760976,-#_bee718be99e7dd6d1f225753d7fa2994p2@SRCIN1
1.21e-96FFCP PHASE2:Hg19::chr4:46126009..46126045,-#_6437a0597f6973b0753d0657a2879445p1@GABRG1
1.21e-96FFCP PHASE1:Hg19::chr4:46126009..46126045,-#_6437a0597f6973b0753d0657a2879445p1@GABRG1
2.85e-96FFCP PHASE2:Hg19::chr19:30016395..30016433,+#_aaa44f693f81f51e27c88fd68f369954+, p@chr19:30016395..30016433
2.85e-96FFCP PHASE1:Hg19::chr19:30016395..30016433,+#_aaa44f693f81f51e27c88fd68f369954p@chr19:30016395..30016433, +
4.51e-96FFCP PHASE1:Hg19::chr5:11386115..11386130,-#_9541d7bc84532cc5974f5cd21dbf1f4ep2@CTNND2
4.51e-96FFCP PHASE2:Hg19::chr5:11386115..11386130,-#_9541d7bc84532cc5974f5cd21dbf1f4ep2@CTNND2
7.48e-96FFCP PHASE1:Hg19::chr12:106976656..106976672,+#_6b74394e6a4930ace2e93e1e71309d86p4@RFX4
7.48e-96FFCP PHASE2:Hg19::chr12:106976656..106976672,+#_6b74394e6a4930ace2e93e1e71309d86p4@RFX4
7.68e-96FFCP PHASE2:Hg19::chr1:84630574..84630602,+#_f85759f6db84e143026fbaf43e3276f9p9@PRKACB
7.68e-96FFCP PHASE1:Hg19::chr1:84630574..84630602,+#_f85759f6db84e143026fbaf43e3276f9p9@PRKACB
8.2e-96FFCP PHASE1:Hg19::chr15:46702499..46702523,+#_231c16a3b305548b5a3dd72d057b8838p@chr15:46702499..46702523, +
8.2e-96FFCP PHASE2:Hg19::chr15:46702499..46702523,+#_231c16a3b305548b5a3dd72d057b8838p@chr15:46702499..46702523, +
8.26e-96FFCP PHASE1:Hg19::chr5:87980761..87980821,-#_6151961ae29fc59948050710d456521bp4@LINC00461
8.26e-96FFCP PHASE2:Hg19::chr5:87980761..87980821,-#_6151961ae29fc59948050710d456521bp4@LINC00461
9.79e-96FFCP PHASE1:Hg19::chrX:13835398..13835429,-#_89a5b487fd80f7740947ba58eee0e413p6@GPM6B
9.79e-96FFCP PHASE2:Hg19::chrX:13835398..13835429,-#_89a5b487fd80f7740947ba58eee0e413p6@GPM6B
1.45e-95FFCP PHASE2:Hg19::chr1:84630610..84630621,+#_1a03cc219a3810009f2808918273e95ep17@PRKACB
1.45e-95FFCP PHASE1:Hg19::chr1:84630610..84630621,+#_1a03cc219a3810009f2808918273e95ep17@PRKACB
1.98e-95FFCP PHASE1:Hg19::chr16:4850844..4850888,-#_0387c31fda800207870085b683156afbp@chr16:4850844..4850888, -
1.98e-95FFCP PHASE2:Hg19::chr16:4850844..4850888,-#_0387c31fda800207870085b683156afbp@chr16:4850844..4850888, -
2.2e-95FFCP PHASE2:Hg19::chr6:136848260..136848296,-#_2dce64811e2b392a70042e4ff815958ep4@MAP7
2.2e-95FFCP PHASE1:Hg19::chr6:136848260..136848296,-#_2dce64811e2b392a70042e4ff815958ep4@MAP7
3.63e-95FFCP PHASE1:Hg19::chr9:87283501..87283520,+#_88602361310a7b8a02db64d28542cfe6p17@NTRK2
3.63e-95FFCP PHASE2:Hg19::chr9:87283501..87283520,+#_88602361310a7b8a02db64d28542cfe6p17@NTRK2
3.98e-95FFCP PHASE2:Hg19::chr1:2005182..2005194,+#_8b8b739c952e081bd89b171cd9c3f6e9p8@PRKCZ
3.98e-95FFCP PHASE1:Hg19::chr1:2005182..2005194,+#_8b8b739c952e081bd89b171cd9c3f6e9p8@PRKCZ
4.64e-95FFCP PHASE1:Hg19::chr12:106976774..106976788,+#_5a4cb5f96568b181af263db5a8c45d0cp1@RFX4
4.64e-95FFCP PHASE2:Hg19::chr12:106976774..106976788,+#_5a4cb5f96568b181af263db5a8c45d0cp1@RFX4
6.45e-95FFCP PHASE1:Hg19::chr6:80131670..80131724,+#_f922bbba864e83868d38c6340f2ca720p@chr6:80131670..80131724, +
6.45e-95FFCP PHASE2:Hg19::chr6:80131670..80131724,+#_f922bbba864e83868d38c6340f2ca720+, p@chr6:80131670..80131724
1.07e-94FFCP PHASE2:Hg19::chr5:160279207..160279247,-#_39e48f1274732675fb9e9beae8814088p1@ATP10B
1.07e-94FFCP PHASE1:Hg19::chr5:160279207..160279247,-#_39e48f1274732675fb9e9beae8814088p1@ATP10B
1.15e-94FFCP PHASE2:Hg19::chr16:76311254..76311274,+#_8ea83a6ca7622d81ae89e6b7fafab1a1p2@CNTNAP4
1.15e-94FFCP PHASE1:Hg19::chr16:76311254..76311274,+#_8ea83a6ca7622d81ae89e6b7fafab1a1p2@CNTNAP4
1.24e-94FFCP PHASE1:Hg19::chr4:46126063..46126087,-#_1fa70e017669a786ec140191f69fea3bp2@GABRG1
1.24e-94FFCP PHASE2:Hg19::chr4:46126063..46126087,-#_1fa70e017669a786ec140191f69fea3bp2@GABRG1
3.41e-94FFCP PHASE2:Hg19::chr7:47420733..47420758,-#_1a4333415b1c64a2b2540c2823a5b37d-, p@chr7:47420733..47420758
3.41e-94FFCP PHASE1:Hg19::chr7:47420733..47420758,-#_1a4333415b1c64a2b2540c2823a5b37d-, p@chr7:47420733..47420758
3.86e-94FFCP PHASE1:Hg19::chrX:13835312..13835321,-#_b9472a1f8ca850af8d8443f2fa313841p9@GPM6B
3.86e-94FFCP PHASE2:Hg19::chrX:13835312..13835321,-#_b9472a1f8ca850af8d8443f2fa313841p9@GPM6B
4.07e-94FFCP PHASE1:Hg19::chr2:74612614..74612643,+#_3b0ef7cb39e6c7f6eded89c0b514bec6p1@ENST00000418990, p1@ENST00000426715, p1@ENST00000427343
4.07e-94FFCP PHASE1:Hg19::chr5:112074041..112074101,+#_3b0ef7cb39e6c7f6eded89c0b514bec6p4@APC
4.07e-94FFCP PHASE2:Hg19::chr2:74612614..74612643,+#_3b0ef7cb39e6c7f6eded89c0b514bec6p1@ENST00000418990, p1@ENST00000426715, p1@ENST00000427343
4.07e-94FFCP PHASE2:Hg19::chr5:112074041..112074101,+#_3b0ef7cb39e6c7f6eded89c0b514bec6p4@APC
1.32e-93FFCP PHASE1:Hg19::chr18:32398400..32398416,+#_a7d6c8da7ef175bbeebc6e2d92ac0b1ap10@DTNA
1.32e-93FFCP PHASE2:Hg19::chr18:32398400..32398416,+#_a7d6c8da7ef175bbeebc6e2d92ac0b1ap10@DTNA
1.41e-93FFCP PHASE2:Hg19::chr17:68101117..68101162,+#_06ff8b37102329ec70e57cb5e9669acap2@KCNJ16
1.41e-93FFCP PHASE1:Hg19::chr17:68101117..68101162,+#_06ff8b37102329ec70e57cb5e9669acap2@KCNJ16
1.62e-93FFCP PHASE1:Hg19::chr18:32398372..32398394,+#_8095122c193159ae69ff85178516bf36p5@DTNA
1.62e-93FFCP PHASE1:Hg19::chr17:42989121..42989166,-#_8095122c193159ae69ff85178516bf36p7@GFAP
1.62e-93FFCP PHASE2:Hg19::chr17:42989121..42989166,-#_8095122c193159ae69ff85178516bf36p7@GFAP
1.62e-93FFCP PHASE2:Hg19::chr18:32398372..32398394,+#_8095122c193159ae69ff85178516bf36p5@DTNA
3.0e-93FFCP PHASE2:Hg19::chr6:56716896..56716928,-#_a7284a4cdf67b483c05e8c28e636a1d8p8@DST
3.0e-93FFCP PHASE1:Hg19::chr6:56716896..56716928,-#_a7284a4cdf67b483c05e8c28e636a1d8p8@DST
4.29e-93FFCP PHASE2:Hg19::chr17:7558857..7558903,+#_36aaa09dbcf9c284512cd33b11b2d6cbp@chr17:7558857..7558903, +
4.29e-93FFCP PHASE1:Hg19::chr17:7558857..7558903,+#_36aaa09dbcf9c284512cd33b11b2d6cbp@chr17:7558857..7558903, +
4.3e-93FFCP PHASE1:Hg19::chr5:11384929..11384947,-#_22df4eb7f291cd68677747dc76337dabp15@CTNND2
4.3e-93FFCP PHASE2:Hg19::chr5:11384929..11384947,-#_22df4eb7f291cd68677747dc76337dabp15@CTNND2
4.84e-93FFCP PHASE1:Hg19::chr10:25940658..25940700,+#_ceab3451f49d221594f009a63050c9e5p1@ENST00000450270
4.84e-93FFCP PHASE2:Hg19::chr10:25940658..25940700,+#_ceab3451f49d221594f009a63050c9e5p1@ENST00000450270
5.06e-93FFCP PHASE2:Hg19::chr1:156217805..156217817,-#_3c3e875d952071ed6dae6fa02b5a878ap2@PAQR6
5.06e-93FFCP PHASE1:Hg19::chr1:156217805..156217817,-#_3c3e875d952071ed6dae6fa02b5a878ap2@PAQR6
5.69e-93FFCP PHASE1:Hg19::chr15:30261066..30261096,-#_52c2fb8cab4f58bc50390d0af6fa2791p12@TJP1
5.69e-93FFCP PHASE2:Hg19::chr15:30261066..30261096,-#_52c2fb8cab4f58bc50390d0af6fa2791p12@TJP1
6.08e-93FFCP PHASE2:Hg19::chr7:29519599..29519612,+#_645b6677b6c59e29a00e292e6378fab0p9@CHN2
6.08e-93FFCP PHASE1:Hg19::chr7:29519599..29519612,+#_645b6677b6c59e29a00e292e6378fab0p9@CHN2
6.68e-93FFCP PHASE1:Hg19::chr2:73286253..73286279,-#_16850ecd2c1b670de32b73977115f888p3@SFXN5
6.68e-93FFCP PHASE2:Hg19::chr2:73286253..73286279,-#_16850ecd2c1b670de32b73977115f888p3@SFXN5
1.1e-92FFCP PHASE2:Hg19::chr16:72459772..72459794,+#_1f1b149ab4c60697baeaf548ed61f254p2@uc002fch.1
1.1e-92FFCP PHASE1:Hg19::chr16:72459772..72459794,+#_1f1b149ab4c60697baeaf548ed61f254p2@uc002fch.1
2.68e-92FFCP PHASE1:Hg19::chr10:62149542..62149590,-#_12b86633237305737e754bbbc8907863p1@ANK3
2.68e-92FFCP PHASE2:Hg19::chr10:62149542..62149590,-#_12b86633237305737e754bbbc8907863p1@ANK3










Property "Property value" (as page type) with input value "UBPROP:0000001 "The earliest recognizable dorsal ectodermal primordium of the central nervous system present near the end of gastrulation before infolding to form the neural keel; consists of a thickened pseudostratified epithelium. Kimmel et al, 1995.[TAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.