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UBERON:0003099

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Name:cranial neural crest
Namespace:FANTOM
Definition:"The cranial neural crest arises in the anterior and populates the face and the pharyngeal arches giving rise to bones, cartilage, nerves and connective tissue [Wikipedia]." [Wikipedia:Cranial_neural_crest, ZFA:0001194, ZFIN:curator]
Xrefs:
links:

AAO:0010580
EFO:0003645
EHDAA2:0004420
EMAPA:16091
TAO:0001194
VHOG:0000063
XAO:0001001

ZFA:0001194
Synonyms: "cephalic neural crest" RELATED [EMAPA:16091]
"crista neuralis cranialis" RELATED LATIN [Wikipedia:Cranial_neural_crest]
"head crest" RELATED []
"head neural crest" RELATED []
Comments:This class was created automatically from a combination of ontologies
Alt_id: UBERON:XAO_0001001-ZFA_0001194
Subset: uberon_slim
vertebrate_core

Ontology association
Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.

link to ontology dataset
data


Parents

is_a:UBERON:0004121(ectoderm-derived structure),UBERON:0005291(embryonic tissue),UBERON:0010314(structure with developmental contribution from neural crest)
part_of:UBERON:0002342(neural crest)



Children

is a:UBERON:0003849 (mesencephalic neural crest),UBERON:0003852 (rhombencephalon neural crest),UBERON:0005565 (facio-acoustic neural crest)
develops from:UBERON:0007213 (mesenchyme derived from head neural crest)

Ontology Tree: Loaded from BioPortal


FF samples
It includes FANTOM5 samples that overlay the Uberon ontology




Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0003099 (cranial neural crest), sorted by p-values
Analyst: Hideya Kawaji

link to source dataset
human : data
mouse : data


P-valueFFCPShort description
5.42e-195FFCP PHASE2:Hg19::chr17:54893192..54893195,-#_46a1de3b034d8ac104db806730ffa12bp14@C17orf67
5.42e-195FFCP PHASE1:Hg19::chr17:54893192..54893195,-#_46a1de3b034d8ac104db806730ffa12bp14@C17orf67
9.37e-99FFCP PHASE1:Hg19::chr17:54893292..54893300,-#_e90aa0e6f4d535799c52baae3511d780p13@C17orf67
9.37e-99FFCP PHASE2:Hg19::chr17:54893213..54893220,-#_e90aa0e6f4d535799c52baae3511d780p12@C17orf67
9.37e-99FFCP PHASE1:Hg19::chr17:54893213..54893220,-#_e90aa0e6f4d535799c52baae3511d780p12@C17orf67
9.37e-99FFCP PHASE1:Hg19::chr8:57353655..57353662,-#_e90aa0e6f4d535799c52baae3511d780p@chr8:57353655..57353662, -
9.37e-99FFCP PHASE2:Hg19::chr17:54893269..54893278,-#_e90aa0e6f4d535799c52baae3511d780p11@C17orf67
9.37e-99FFCP PHASE2:Hg19::chr8:57353655..57353662,-#_e90aa0e6f4d535799c52baae3511d780p@chr8:57353655..57353662, -
9.37e-99FFCP PHASE1:Hg19::chr17:54893269..54893278,-#_e90aa0e6f4d535799c52baae3511d780p11@C17orf67
9.37e-99FFCP PHASE2:Hg19::chr17:54893292..54893300,-#_e90aa0e6f4d535799c52baae3511d780p13@C17orf67
2.39e-66FFCP PHASE1:Hg19::chr4:151503647..151503656,+#_ad74e28132eca1880239785893f812e8p14@MAB21L2
2.39e-66FFCP PHASE2:Hg19::chr4:151503647..151503656,+#_ad74e28132eca1880239785893f812e8p14@MAB21L2
2.39e-66FFCP PHASE2:Hg19::chr5:75912402..75912418,-#_ad74e28132eca1880239785893f812e8p@chr5:75912402..75912418, -
2.39e-66FFCP PHASE1:Hg19::chr5:75912402..75912418,-#_ad74e28132eca1880239785893f812e8p@chr5:75912402..75912418, -
4.66e-66FFCP PHASE1:Hg19::chr4:151505582..151505614,+#_4f4681b0cb8f7ada521ad0508d74fe47p@chr4:151505582..151505614, +
4.66e-66FFCP PHASE2:Hg19::chr4:151505582..151505614,+#_4f4681b0cb8f7ada521ad0508d74fe47p@chr4:151505582..151505614, +
1.46e-50FFCP PHASE2:Hg19::chr3:157823323..157823328,+#_ffacbad1e0d41d92df8307a21fbfcc20p17@RSRC1
1.46e-50FFCP PHASE1:Hg19::chr8:57354278..57354286,+#_ffacbad1e0d41d92df8307a21fbfcc20p@chr8:57354278..57354286, +
1.46e-50FFCP PHASE2:Hg19::chr17:54893196..54893207,-#_ffacbad1e0d41d92df8307a21fbfcc20p9@C17orf67
1.46e-50FFCP PHASE1:Hg19::chr3:157823323..157823328,+#_ffacbad1e0d41d92df8307a21fbfcc20p17@RSRC1
1.46e-50FFCP PHASE2:Hg19::chr8:57354278..57354286,+#_ffacbad1e0d41d92df8307a21fbfcc20+, p@chr8:57354278..57354286
1.46e-50FFCP PHASE1:Hg19::chr17:54893196..54893207,-#_ffacbad1e0d41d92df8307a21fbfcc20p9@C17orf67
2.42e-50FFCP PHASE1:Hg19::chr8:57802672..57802682,-#_cc47877f38ef60ef5466e278f7e1ef23p@chr8:57802672..57802682, -
2.42e-50FFCP PHASE2:Hg19::chr8:57802672..57802682,-#_cc47877f38ef60ef5466e278f7e1ef23p@chr8:57802672..57802682, -
3.99e-50FFCP PHASE2:Hg19::chr17:76930661..76930674,+#_6102483e4ed8d64c9633e27dda7e2e1ep1@AK123925
3.99e-50FFCP PHASE2:Hg19::chr5:75913767..75913778,-#_6102483e4ed8d64c9633e27dda7e2e1ep@chr5:75913767..75913778, -
3.99e-50FFCP PHASE1:Hg19::chr5:75913767..75913778,-#_6102483e4ed8d64c9633e27dda7e2e1ep@chr5:75913767..75913778, -
3.99e-50FFCP PHASE1:Hg19::chr17:76930661..76930674,+#_6102483e4ed8d64c9633e27dda7e2e1ep1@AK123925
3.99e-50FFCP PHASE1:Hg19::chr12:85673913..85673919,+#_6102483e4ed8d64c9633e27dda7e2e1ep7@ALX1
3.99e-50FFCP PHASE2:Hg19::chr12:85673913..85673919,+#_6102483e4ed8d64c9633e27dda7e2e1ep7@ALX1
6.58e-50FFCP PHASE1:Hg19::chr2:33519090..33519092,+#_de1216d24d90d9214dab7c4c1e9a2998p@chr2:33519090..33519092, +
6.58e-50FFCP PHASE2:Hg19::chr2:33519090..33519092,+#_de1216d24d90d9214dab7c4c1e9a2998p@chr2:33519090..33519092, +
6.58e-50FFCP PHASE2:Hg19::chr13:28961248..28961262,-#_de1216d24d90d9214dab7c4c1e9a2998p23@FLT1
6.58e-50FFCP PHASE1:Hg19::chr13:28961248..28961262,-#_de1216d24d90d9214dab7c4c1e9a2998p23@FLT1
6.62e-41FFCP PHASE2:Hg19::chr8:57353666..57353675,-#_c799d52fd5ae22eee0111a08d60b1f2fp@chr8:57353666..57353675, -
6.62e-41FFCP PHASE1:Hg19::chr8:57354143..57354152,+#_c799d52fd5ae22eee0111a08d60b1f2fp@chr8:57354143..57354152, +
6.62e-41FFCP PHASE1:Hg19::chr8:57353779..57353790,-#_c799d52fd5ae22eee0111a08d60b1f2fp@chr8:57353779..57353790, -
6.62e-41FFCP PHASE2:Hg19::chr8:57354143..57354152,+#_c799d52fd5ae22eee0111a08d60b1f2fp@chr8:57354143..57354152, +
6.62e-41FFCP PHASE2:Hg19::chr8:57353779..57353790,-#_c799d52fd5ae22eee0111a08d60b1f2f-, p@chr8:57353779..57353790
6.62e-41FFCP PHASE1:Hg19::chr8:57353666..57353675,-#_c799d52fd5ae22eee0111a08d60b1f2fp@chr8:57353666..57353675, -
1.48e-40FFCP PHASE1:Hg19::chr1:75600308..75600316,+#_b3472fc033383b7552f9fd817f6f9ad0p8@LHX8
1.48e-40FFCP PHASE2:Hg19::chr1:6615391..6615401,+#_b3472fc033383b7552f9fd817f6f9ad0p2@TAS1R1
1.48e-40FFCP PHASE1:Hg19::chr20:49253452..49253461,-#_b3472fc033383b7552f9fd817f6f9ad0p12@FAM65C
1.48e-40FFCP PHASE2:Hg19::chr1:75600308..75600316,+#_b3472fc033383b7552f9fd817f6f9ad0p8@LHX8
1.48e-40FFCP PHASE1:Hg19::chr1:6615391..6615401,+#_b3472fc033383b7552f9fd817f6f9ad0p2@TAS1R1
1.48e-40FFCP PHASE2:Hg19::chr20:49253452..49253461,-#_b3472fc033383b7552f9fd817f6f9ad0p12@FAM65C
2.21e-40FFCP PHASE2:Hg19::chr16:67687543..67687559,-#_84a2235c76e29c17e2130c10f1c42378p@chr16:67687543..67687559, -
2.21e-40FFCP PHASE1:Hg19::chr16:67687543..67687559,-#_84a2235c76e29c17e2130c10f1c42378p@chr16:67687543..67687559, -
2.21e-40FFCP PHASE2:Hg19::chr5:75912831..75912842,-#_84a2235c76e29c17e2130c10f1c42378p@chr5:75912831..75912842, -
2.21e-40FFCP PHASE1:Hg19::chr5:75912831..75912842,-#_84a2235c76e29c17e2130c10f1c42378p@chr5:75912831..75912842, -
3.3e-40FFCP PHASE1:Hg19::chr6:46190219..46190230,-#_f9a9e963b3adcb2e502d9e9b3abe88dbp@chr6:46190219..46190230, -
3.3e-40FFCP PHASE1:Hg19::chr9:125165007..125165016,+#_f9a9e963b3adcb2e502d9e9b3abe88dbp@chr9:125165007..125165016, +
3.3e-40FFCP PHASE2:Hg19::chr6:46190219..46190230,-#_f9a9e963b3adcb2e502d9e9b3abe88dbp@chr6:46190219..46190230, -
3.3e-40FFCP PHASE2:Hg19::chr9:125165007..125165016,+#_f9a9e963b3adcb2e502d9e9b3abe88dbp@chr9:125165007..125165016, +
1.84e-34FFCP PHASE1:Hg19::chr10:15760985..15760992,-#_75e7e95384083b97dbd96e9abab4fb00p@chr10:15760985..15760992, -
1.84e-34FFCP PHASE1:Hg19::chr8:57359557..57359570,-#_75e7e95384083b97dbd96e9abab4fb00p5@PENK
1.84e-34FFCP PHASE2:Hg19::chr8:57359557..57359570,-#_75e7e95384083b97dbd96e9abab4fb00p5@PENK
1.84e-34FFCP PHASE2:Hg19::chr4:8594472..8594473,+#_75e7e95384083b97dbd96e9abab4fb00p4@CPZ
1.84e-34FFCP PHASE2:Hg19::chr10:15760985..15760992,-#_75e7e95384083b97dbd96e9abab4fb00p@chr10:15760985..15760992, -
1.84e-34FFCP PHASE1:Hg19::chr4:8594472..8594473,+#_75e7e95384083b97dbd96e9abab4fb00p4@CPZ
2.58e-34FFCP PHASE1:Hg19::chr14:61125018..61125037,-#_79fa4f6f580d0c7a62de77c403004d4bp9@SIX1
2.58e-34FFCP PHASE2:Hg19::chr14:61125018..61125037,-#_79fa4f6f580d0c7a62de77c403004d4bp9@SIX1
5.05e-34FFCP PHASE1:Hg19::chr6:134327986..134327991,-#_e1455b68b6d09f1837fe4b81a02a336ep@chr6:134327986..134327991, -
5.05e-34FFCP PHASE2:Hg19::chr6:134327986..134327991,-#_e1455b68b6d09f1837fe4b81a02a336ep@chr6:134327986..134327991, -
7.06e-34FFCP PHASE2:Hg19::chr13:58291223..58291226,+#_7124d92e1e06c1955ff6f71b108ecce9p@chr13:58291223..58291226, +
7.06e-34FFCP PHASE1:Hg19::chr8:57353676..57353688,-#_7124d92e1e06c1955ff6f71b108ecce9-, p@chr8:57353676..57353688
7.06e-34FFCP PHASE2:Hg19::chr8:57353676..57353688,-#_7124d92e1e06c1955ff6f71b108ecce9p@chr8:57353676..57353688, -
7.06e-34FFCP PHASE1:Hg19::chr13:58291223..58291226,+#_7124d92e1e06c1955ff6f71b108ecce9p@chr13:58291223..58291226, +
9.85e-34FFCP PHASE2:Hg19::chr5:127873659..127873667,-#_055b758cfbded20170e848b851c73ed2p12@FBN2
9.85e-34FFCP PHASE2:Hg19::chrX:133792540..133792551,-#_055b758cfbded20170e848b851c73ed2p4@PLAC1
9.85e-34FFCP PHASE2:Hg19::chr5:19721484..19721507,-#_055b758cfbded20170e848b851c73ed2-, p@chr5:19721484..19721507
9.85e-34FFCP PHASE1:Hg19::chrX:133792540..133792551,-#_055b758cfbded20170e848b851c73ed2p4@PLAC1
9.85e-34FFCP PHASE1:Hg19::chr5:127873659..127873667,-#_055b758cfbded20170e848b851c73ed2p12@FBN2
9.85e-34FFCP PHASE1:Hg19::chr5:19721484..19721507,-#_055b758cfbded20170e848b851c73ed2p@chr5:19721484..19721507, -
7.48e-30FFCP PHASE2:Hg19::chr8:57354360..57354367,+#_297640b28d1bcb0c639cdba3f06f7c09+, p@chr8:57354360..57354367
7.48e-30FFCP PHASE1:Hg19::chr8:57353982..57353991,-#_297640b28d1bcb0c639cdba3f06f7c09-, p@chr8:57353982..57353991
7.48e-30FFCP PHASE2:Hg19::chr8:57353982..57353991,-#_297640b28d1bcb0c639cdba3f06f7c09p@chr8:57353982..57353991, -
7.48e-30FFCP PHASE1:Hg19::chr8:57353804..57353821,-#_297640b28d1bcb0c639cdba3f06f7c09p@chr8:57353804..57353821, -
7.48e-30FFCP PHASE2:Hg19::chr8:57353804..57353821,-#_297640b28d1bcb0c639cdba3f06f7c09p@chr8:57353804..57353821, -
7.48e-30FFCP PHASE1:Hg19::chr8:57354360..57354367,+#_297640b28d1bcb0c639cdba3f06f7c09p@chr8:57354360..57354367, +
9.99e-30FFCP PHASE1:Hg19::chr3:157824322..157824334,-#_109e9a8648a226eca7d99f4071cbff4ep7@SHOX2
9.99e-30FFCP PHASE2:Hg19::chr3:157824322..157824334,-#_109e9a8648a226eca7d99f4071cbff4ep7@SHOX2
9.99e-30FFCP PHASE2:Hg19::chr10:15762107..15762114,-#_109e9a8648a226eca7d99f4071cbff4ep10@ITGA8
9.99e-30FFCP PHASE1:Hg19::chr10:15762107..15762114,-#_109e9a8648a226eca7d99f4071cbff4ep10@ITGA8
1.33e-29FFCP PHASE1:Hg19::chr17:79071218..79071221,-#_e50fe49600b3c3855bdce5efd3c8a3fdp@chr17:79071218..79071221, -
1.33e-29FFCP PHASE2:Hg19::chrX:132670143..132670152,-#_e50fe49600b3c3855bdce5efd3c8a3fdp@chrX:132670143..132670152, -
1.33e-29FFCP PHASE2:Hg19::chr17:79071218..79071221,-#_e50fe49600b3c3855bdce5efd3c8a3fdp@chr17:79071218..79071221, -
1.33e-29FFCP PHASE1:Hg19::chr22:28193943..28193956,-#_e50fe49600b3c3855bdce5efd3c8a3fdp@chr22:28193943..28193956, -
1.33e-29FFCP PHASE2:Hg19::chr22:28193943..28193956,-#_e50fe49600b3c3855bdce5efd3c8a3fdp@chr22:28193943..28193956, -
1.33e-29FFCP PHASE1:Hg19::chrX:132670143..132670152,-#_e50fe49600b3c3855bdce5efd3c8a3fdp@chrX:132670143..132670152, -
1.78e-29FFCP PHASE2:Hg19::chr1:21904551..21904569,-#_a2dc04693305706e2bcacfbd49930e86p@chr1:21904551..21904569, -
1.78e-29FFCP PHASE1:Hg19::chr1:21904551..21904569,-#_a2dc04693305706e2bcacfbd49930e86p@chr1:21904551..21904569, -
3.16e-29FFCP PHASE1:Hg19::chr1:156470861..156470868,-#_ca9f4b8669898df264db249505fd46b3p18@MEF2D
3.16e-29FFCP PHASE2:Hg19::chr14:89044406..89044416,+#_ca9f4b8669898df264db249505fd46b3p@chr14:89044406..89044416, +
3.16e-29FFCP PHASE1:Hg19::chr14:89044406..89044416,+#_ca9f4b8669898df264db249505fd46b3p@chr14:89044406..89044416, +
3.16e-29FFCP PHASE1:Hg19::chr8:57359975..57359992,-#_ca9f4b8669898df264db249505fd46b3p@chr8:57359975..57359992, -
3.16e-29FFCP PHASE2:Hg19::chr8:57359975..57359992,-#_ca9f4b8669898df264db249505fd46b3-, p@chr8:57359975..57359992
3.16e-29FFCP PHASE2:Hg19::chr1:156470861..156470868,-#_ca9f4b8669898df264db249505fd46b3p18@MEF2D
4.2e-29FFCP PHASE1:Hg19::chr13:36046127..36046134,+#_82b2166c7c3fe31a05e36be88246e87cp@chr13:36046127..36046134, +
4.2e-29FFCP PHASE2:Hg19::chr1:75602768..75602785,+#_82b2166c7c3fe31a05e36be88246e87c+, p@chr1:75602768..75602785










Property "Property value" (as page type) with input value "UBPROP:0000001 "Anterior most portion of the neural crest. Migrates in three highly conserved streams: mandibular, hyoid and branchial.[AAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process., Property "Property value" (as page type) with input value "UBPROP:0000001 "Neural crest that is part of the head.[TAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.