UBERON:0003129
From FANTOM5_SSTAR
Name: | skull | ||
---|---|---|---|
Namespace: | FANTOM | ||
Definition: | "Anatomical structure that is part of the head consisting entirely of cranium and mandible[WP]." [http://sourceforge.net/tracker/?func | ||
Xrefs: |
| ||
Synonyms: |
"cranial skeleton" RELATED [] "skeletal system of head" RELATED [] | ||
Comments: | In FMA the skull is divided into orbit, neurocranium (8 parts), viscerocranium (26 parts). Here we have a separate overlapping division into cranium and mandible. // A skull that is missing a mandible is only a cranium; this is the source of a very commonly made error in terminology. Those animals having skulls are called craniates[WP]. Editor/AO notes: in many ontologies, the structure called the cranium is inclusive of the mandible/lower jaw skeleton | ||
Subset: | uberon_slim |
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
is_a: | UBERON:0000075(subdivision of skeletal system),UBERON:0010314(structure with developmental contribution from neural crest) |
---|---|
part_of: | UBERON:0000033(head),UBERON:0010323(cranial skeletal system) |
Children
part of: | UBERON:0001825 (paranasal sinus),UBERON:0003128 (cranium),UBERON:0005744 (cranial conduit),UBERON:0011158 (primary subdivision of skull) |
---|
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Human (Homo sapiens)
- 10195-103E6 (olfactory region, adult)
- 11223-116B8 (Fibroblast - Periodontal Ligament, donor4 (PL29))
- 11238-116D5 (Fibroblast - Periodontal Ligament, donor1)
- 11304-117B8 (Fibroblast - Periodontal Ligament, donor5 (PL30))
- 11319-117D5 (Fibroblast - Periodontal Ligament, donor2)
- 11380-118B3 (Fibroblast - Periodontal Ligament, donor6 (PLH3))
- 11395-118C9 (Fibroblast - Periodontal Ligament, donor3)
- 12157-128G6 (Sox2+ Supporting cells - organ of corti, pool1)
- 12158-128G7 (Atoh+ Inner ear hair cells - organ of corti, pool1)
- 12215-129E1 (Inner ear stem cells, 1st generation stem cells, pool1)
... further results Mouse (Mus musculus)
- 10195-103E6 (olfactory region, adult)
- 11223-116B8 (Fibroblast - Periodontal Ligament, donor4 (PL29))
- 11238-116D5 (Fibroblast - Periodontal Ligament, donor1)
- 11304-117B8 (Fibroblast - Periodontal Ligament, donor5 (PL30))
- 11319-117D5 (Fibroblast - Periodontal Ligament, donor2)
- 11380-118B3 (Fibroblast - Periodontal Ligament, donor6 (PLH3))
- 11395-118C9 (Fibroblast - Periodontal Ligament, donor3)
- 12157-128G6 (Sox2+ Supporting cells - organ of corti, pool1)
- 12158-128G7 (Atoh+ Inner ear hair cells - organ of corti, pool1)
- 12215-129E1 (Inner ear stem cells, 1st generation stem cells, pool1)
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0003129 (skull), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
P-value | FFCP | Short description |
---|---|---|
1.87e-86 | FFCP PHASE1:Mm9::chr9:42207397..42207408,-#_40d70c2e6c9363196e5764093c9b0a2e | p@chr9:42207397..42207408, - |
1.87e-86 | FFCP PHASE2:Mm9::chr14:20649897..20649907,+#_40d70c2e6c9363196e5764093c9b0a2e | p@chr14:20649897..20649907, + |
1.87e-86 | FFCP PHASE1:Mm9::chr5:30710403..30710406,-#_40d70c2e6c9363196e5764093c9b0a2e | p10@Otof |
1.87e-86 | FFCP PHASE1:Mm9::chr1:172843885..172843890,-#_40d70c2e6c9363196e5764093c9b0a2e | p@chr1:172843885..172843890, - |
1.87e-86 | FFCP PHASE2:Mm9::chr14:63099970..63099980,-#_40d70c2e6c9363196e5764093c9b0a2e | p@chr14:63099970..63099980, - |
1.87e-86 | FFCP PHASE2:Mm9::chr2:121206695..121206711,-#_40d70c2e6c9363196e5764093c9b0a2e | p1@Strc |
1.87e-86 | FFCP PHASE1:Mm9::chr2:67011921..67011934,+#_40d70c2e6c9363196e5764093c9b0a2e | p2@Gm1322 |
1.87e-86 | FFCP PHASE2:Mm9::chr9:42207852..42207876,-#_40d70c2e6c9363196e5764093c9b0a2e | p2@Tecta |
1.87e-86 | FFCP PHASE1:Mm9::chr13:78257518..78257522,+#_40d70c2e6c9363196e5764093c9b0a2e | p@chr13:78257518..78257522, + |
1.87e-86 | FFCP PHASE1:Mm9::chr3:154693281..154693317,-#_40d70c2e6c9363196e5764093c9b0a2e | p@chr3:154693281..154693317, - |
1.87e-86 | FFCP PHASE1:Mm9::chr2:128881546..128881553,-#_40d70c2e6c9363196e5764093c9b0a2e | p@chr2:128881546..128881553, - |
1.87e-86 | FFCP PHASE2:Mm9::chr8:13435173..13435186,+#_40d70c2e6c9363196e5764093c9b0a2e | p6@Fam70b |
1.87e-86 | FFCP PHASE1:Mm9::chr11:75421384..75421397,+#_40d70c2e6c9363196e5764093c9b0a2e | p@chr11:75421384..75421397, + |
1.87e-86 | FFCP PHASE2:Mm9::chr16:96494788..96494801,+#_40d70c2e6c9363196e5764093c9b0a2e | p12@B3galt5 |
1.87e-86 | FFCP PHASE1:Mm9::chr7:109265277..109265288,-#_40d70c2e6c9363196e5764093c9b0a2e | p4@Chrna10 |
1.87e-86 | FFCP PHASE1:Mm9::chr14:31283072..31283081,-#_40d70c2e6c9363196e5764093c9b0a2e | p@chr14:31283072..31283081, - |
1.87e-86 | FFCP PHASE2:Mm9::chr12:13508015..13508019,+#_40d70c2e6c9363196e5764093c9b0a2e | p@chr12:13508015..13508019, + |
1.87e-86 | FFCP PHASE2:Mm9::chr4:115556972..115556979,+#_40d70c2e6c9363196e5764093c9b0a2e | p3@Kncn |
1.87e-86 | FFCP PHASE2:Mm9::chr16:45693840..45693856,-#_40d70c2e6c9363196e5764093c9b0a2e | p1@Tmprss7 |
1.87e-86 | FFCP PHASE1:Mm9::chr4:115556939..115556945,+#_40d70c2e6c9363196e5764093c9b0a2e | p4@Kncn |
1.87e-86 | FFCP PHASE2:Mm9::chr9:42206730..42206739,-#_40d70c2e6c9363196e5764093c9b0a2e | p@chr9:42206730..42206739, - |
1.87e-86 | FFCP PHASE1:Mm9::chr7:27964761..27964768,+#_40d70c2e6c9363196e5764093c9b0a2e | p@chr7:27964761..27964768, + |
1.87e-86 | FFCP PHASE1:Mm9::chr11:102123554..102123566,+#_40d70c2e6c9363196e5764093c9b0a2e | p4@BC030867 |
1.87e-86 | FFCP PHASE1:Mm9::chr13:48087761..48087775,-#_40d70c2e6c9363196e5764093c9b0a2e | p@chr13:48087761..48087775, - |
1.87e-86 | FFCP PHASE1:Mm9::chr15:58480061..58480066,+#_40d70c2e6c9363196e5764093c9b0a2e | p5@Fer1l6 |
1.87e-86 | FFCP PHASE1:Mm9::chr11:4689776..4689785,-#_40d70c2e6c9363196e5764093c9b0a2e | p@chr11:4689776..4689785, - |
1.87e-86 | FFCP PHASE1:Mm9::chr10:107349418..107349423,-#_40d70c2e6c9363196e5764093c9b0a2e | p5@Otogl |
1.87e-86 | FFCP PHASE2:Mm9::chr3:69811606..69811616,+#_40d70c2e6c9363196e5764093c9b0a2e | p2@Otol1 |
1.87e-86 | FFCP PHASE2:Mm9::chr11:11599532..11599539,-#_40d70c2e6c9363196e5764093c9b0a2e | p@chr11:11599532..11599539, - |
1.87e-86 | FFCP PHASE2:Mm9::chr10:107349392..107349413,-#_40d70c2e6c9363196e5764093c9b0a2e | p2@Otogl |
1.87e-86 | FFCP PHASE2:Mm9::chr4:154208086..154208123,+#_40d70c2e6c9363196e5764093c9b0a2e | p@chr4:154208086..154208123, + |
1.87e-86 | FFCP PHASE1:Mm9::chr10:80806047..80806059,-#_40d70c2e6c9363196e5764093c9b0a2e | p4@Gipc3 |
1.87e-86 | FFCP PHASE1:Mm9::chr18:81314626..81314636,+#_40d70c2e6c9363196e5764093c9b0a2e | p@chr18:81314626..81314636, + |
1.87e-86 | FFCP PHASE2:Mm9::chr6:113251614..113251623,+#_40d70c2e6c9363196e5764093c9b0a2e | p@chr6:113251614..113251623, + |
1.87e-86 | FFCP PHASE1:Mm9::chr4:151505798..151505818,-#_40d70c2e6c9363196e5764093c9b0a2e | p21@Espn |
1.87e-86 | FFCP PHASE1:Mm9::chr15:103146966..103146971,-#_40d70c2e6c9363196e5764093c9b0a2e | p@chr15:103146966..103146971, - |
1.87e-86 | FFCP PHASE1:Mm9::chr19:55256373..55256384,+#_40d70c2e6c9363196e5764093c9b0a2e | p@chr19:55256373..55256384, + |
1.87e-86 | FFCP PHASE1:Mm9::chr9:42207852..42207876,-#_40d70c2e6c9363196e5764093c9b0a2e | p2@Tecta |
1.87e-86 | FFCP PHASE1:Mm9::chr5:3909310..3909321,+#_40d70c2e6c9363196e5764093c9b0a2e | p@chr5:3909310..3909321, + |
1.87e-86 | FFCP PHASE1:Mm9::chr1:182528371..182528385,+#_40d70c2e6c9363196e5764093c9b0a2e | p@chr1:182528371..182528385, + |
1.87e-86 | FFCP PHASE1:Mm9::chr6:113251614..113251623,+#_40d70c2e6c9363196e5764093c9b0a2e | p@chr6:113251614..113251623, + |
1.87e-86 | FFCP PHASE1:Mm9::chr17:13983102..13983126,+#_40d70c2e6c9363196e5764093c9b0a2e | p@chr17:13983102..13983126, + |
1.87e-86 | FFCP PHASE2:Mm9::chr9:42208023..42208043,-#_40d70c2e6c9363196e5764093c9b0a2e | p4@Tecta |
1.87e-86 | FFCP PHASE2:Mm9::chr4:63079735..63079745,-#_40d70c2e6c9363196e5764093c9b0a2e | p@chr4:63079735..63079745, - |
1.87e-86 | FFCP PHASE1:Mm9::chr9:42206730..42206739,-#_40d70c2e6c9363196e5764093c9b0a2e | p@chr9:42206730..42206739, - |
1.87e-86 | FFCP PHASE1:Mm9::chr3:35012397..35012405,+#_40d70c2e6c9363196e5764093c9b0a2e | p@chr3:35012397..35012405, + |
1.87e-86 | FFCP PHASE1:Mm9::chr15:89215306..89215315,+#_40d70c2e6c9363196e5764093c9b0a2e | p@chr15:89215306..89215315, + |
1.87e-86 | FFCP PHASE2:Mm9::chr1:93235228..93235249,+#_40d70c2e6c9363196e5764093c9b0a2e | p@chr1:93235228..93235249, + |
1.87e-86 | FFCP PHASE1:Mm9::chr11:89702580..89702593,-#_40d70c2e6c9363196e5764093c9b0a2e | p@chr11:89702580..89702593, - |
1.87e-86 | FFCP PHASE2:Mm9::chr10:80806020..80806031,-#_40d70c2e6c9363196e5764093c9b0a2e | p3@Gipc3 |
1.87e-86 | FFCP PHASE2:Mm9::chr17:31335869..31335899,-#_40d70c2e6c9363196e5764093c9b0a2e | p1@Tmprss3 |
1.87e-86 | FFCP PHASE1:Mm9::chr16:93971325..93971337,-#_40d70c2e6c9363196e5764093c9b0a2e | p@chr16:93971325..93971337, - |
1.87e-86 | FFCP PHASE2:Mm9::chr13:78257518..78257522,+#_40d70c2e6c9363196e5764093c9b0a2e | p@chr13:78257518..78257522, + |
1.87e-86 | FFCP PHASE2:Mm9::chr9:42207697..42207705,-#_40d70c2e6c9363196e5764093c9b0a2e | p@chr9:42207697..42207705, - |
1.87e-86 | FFCP PHASE1:Mm9::chr1:93235253..93235264,+#_40d70c2e6c9363196e5764093c9b0a2e | p@chr1:93235253..93235264, + |
1.87e-86 | FFCP PHASE2:Mm9::chr19:21028739..21028785,-#_40d70c2e6c9363196e5764093c9b0a2e | p1@Tmc1 |
1.87e-86 | FFCP PHASE1:Mm9::chr8:13435173..13435186,+#_40d70c2e6c9363196e5764093c9b0a2e | p6@Fam70b |
1.87e-86 | FFCP PHASE2:Mm9::chr8:13414266..13414279,+#_40d70c2e6c9363196e5764093c9b0a2e | p@chr8:13414266..13414279, + |
1.87e-86 | FFCP PHASE2:Mm9::chr1:172843796..172843799,-#_40d70c2e6c9363196e5764093c9b0a2e | p@chr1:172843796..172843799, - |
1.87e-86 | FFCP PHASE2:Mm9::chr5:30710455..30710464,-#_40d70c2e6c9363196e5764093c9b0a2e | p9@Otof |
1.87e-86 | FFCP PHASE1:Mm9::chr7:109052297..109052300,-#_40d70c2e6c9363196e5764093c9b0a2e | p2@Tomt |
1.87e-86 | FFCP PHASE2:Mm9::chr1:194818647..194818660,-#_40d70c2e6c9363196e5764093c9b0a2e | p@chr1:194818647..194818660, - |
1.87e-86 | FFCP PHASE2:Mm9::chr5:68423014..68423037,+#_40d70c2e6c9363196e5764093c9b0a2e | p1@Grxcr1 |
1.87e-86 | FFCP PHASE2:Mm9::chr10:108316802..108316807,-#_40d70c2e6c9363196e5764093c9b0a2e | p@chr10:108316802..108316807, - |
1.87e-86 | FFCP PHASE2:Mm9::chr9:50968647..50968668,-#_40d70c2e6c9363196e5764093c9b0a2e | p@chr9:50968647..50968668, - |
1.87e-86 | FFCP PHASE1:Mm9::chr10:97109753..97109764,+#_40d70c2e6c9363196e5764093c9b0a2e | p3@Epyc |
1.87e-86 | FFCP PHASE1:Mm9::chrX:154140781..154140788,+#_40d70c2e6c9363196e5764093c9b0a2e | p@chrX:154140781..154140788, + |
1.87e-86 | FFCP PHASE1:Mm9::chr17:31335869..31335899,-#_40d70c2e6c9363196e5764093c9b0a2e | p1@Tmprss3 |
1.87e-86 | FFCP PHASE2:Mm9::chr5:3909290..3909299,+#_40d70c2e6c9363196e5764093c9b0a2e | p@chr5:3909290..3909299, + |
1.87e-86 | FFCP PHASE1:Mm9::chr9:42208023..42208043,-#_40d70c2e6c9363196e5764093c9b0a2e | p4@Tecta |
1.87e-86 | FFCP PHASE1:Mm9::chr3:81012915..81012923,+#_40d70c2e6c9363196e5764093c9b0a2e | p@chr3:81012915..81012923, + |
1.87e-86 | FFCP PHASE1:Mm9::chr10:67371994..67372010,+#_40d70c2e6c9363196e5764093c9b0a2e | p@chr10:67371994..67372010, + |
1.87e-86 | FFCP PHASE2:Mm9::chr17:13983102..13983126,+#_40d70c2e6c9363196e5764093c9b0a2e | p@chr17:13983102..13983126, + |
1.87e-86 | FFCP PHASE1:Mm9::chr5:68423014..68423037,+#_40d70c2e6c9363196e5764093c9b0a2e | p1@Grxcr1 |
1.87e-86 | FFCP PHASE1:Mm9::chr18:66033526..66033539,-#_40d70c2e6c9363196e5764093c9b0a2e | p@chr18:66033526..66033539, - |
1.87e-86 | FFCP PHASE2:Mm9::chr1:78523144..78523177,+#_40d70c2e6c9363196e5764093c9b0a2e | p@chr1:78523144..78523177, + |
1.87e-86 | FFCP PHASE2:Mm9::chr15:89215306..89215315,+#_40d70c2e6c9363196e5764093c9b0a2e | p@chr15:89215306..89215315, + |
1.87e-86 | FFCP PHASE2:Mm9::chr3:58626291..58626298,-#_40d70c2e6c9363196e5764093c9b0a2e | p@chr3:58626291..58626298, - |
1.87e-86 | FFCP PHASE1:Mm9::chr13:43699228..43699239,+#_40d70c2e6c9363196e5764093c9b0a2e | p@chr13:43699228..43699239, + |
1.87e-86 | FFCP PHASE1:Mm9::chr9:42207697..42207705,-#_40d70c2e6c9363196e5764093c9b0a2e | p@chr9:42207697..42207705, - |
1.87e-86 | FFCP PHASE1:Mm9::chr3:58626291..58626298,-#_40d70c2e6c9363196e5764093c9b0a2e | p@chr3:58626291..58626298, - |
1.87e-86 | FFCP PHASE1:Mm9::chr12:109905399..109905416,+#_40d70c2e6c9363196e5764093c9b0a2e | p@chr12:109905399..109905416, + |
1.87e-86 | FFCP PHASE2:Mm9::chr12:77084875..77084885,+#_40d70c2e6c9363196e5764093c9b0a2e | p@chr12:77084875..77084885, + |
1.87e-86 | FFCP PHASE1:Mm9::chr7:133957514..133957529,+#_40d70c2e6c9363196e5764093c9b0a2e | p@chr7:133957514..133957529, + |
1.87e-86 | FFCP PHASE1:Mm9::chr5:30710416..30710440,-#_40d70c2e6c9363196e5764093c9b0a2e | p2@Otof |
1.87e-86 | FFCP PHASE2:Mm9::chr6:30619378..30619412,-#_40d70c2e6c9363196e5764093c9b0a2e | p11@Tsga14 |
1.87e-86 | FFCP PHASE2:Mm9::chr9:56208792..56208814,-#_40d70c2e6c9363196e5764093c9b0a2e | p@chr9:56208792..56208814, - |
1.87e-86 | FFCP PHASE2:Mm9::chr9:42207887..42207960,-#_40d70c2e6c9363196e5764093c9b0a2e | p1@Tecta |
1.87e-86 | FFCP PHASE1:Mm9::chr19:4140290..4140321,+#_40d70c2e6c9363196e5764093c9b0a2e | p2@Gpr152 |
1.87e-86 | FFCP PHASE1:Mm9::chr13:78322370..78322376,-#_40d70c2e6c9363196e5764093c9b0a2e | p4@uc007rhb.1 |
1.87e-86 | FFCP PHASE1:Mm9::chr14:31283085..31283097,-#_40d70c2e6c9363196e5764093c9b0a2e | p@chr14:31283085..31283097, - |
1.87e-86 | FFCP PHASE2:Mm9::chr4:115556989..115556997,+#_40d70c2e6c9363196e5764093c9b0a2e | p1@Kncn |
1.87e-86 | FFCP PHASE1:Mm9::chr9:56208792..56208814,-#_40d70c2e6c9363196e5764093c9b0a2e | p@chr9:56208792..56208814, - |
1.87e-86 | FFCP PHASE1:Mm9::chr4:115556972..115556979,+#_40d70c2e6c9363196e5764093c9b0a2e | p3@Kncn |
1.87e-86 | FFCP PHASE1:Mm9::chr16:45693840..45693856,-#_40d70c2e6c9363196e5764093c9b0a2e | p1@Tmprss7 |
1.87e-86 | FFCP PHASE2:Mm9::chr13:76964459..76964469,+#_40d70c2e6c9363196e5764093c9b0a2e | p15@Mctp1 |
1.87e-86 | FFCP PHASE2:Mm9::chr9:42206745..42206774,-#_40d70c2e6c9363196e5764093c9b0a2e | p@chr9:42206745..42206774, - |
1.87e-86 | FFCP PHASE2:Mm9::chr19:55255206..55255223,+#_40d70c2e6c9363196e5764093c9b0a2e | p1@Tectb |
1.87e-86 | FFCP PHASE1:Mm9::chr13:58283583..58283607,-#_40d70c2e6c9363196e5764093c9b0a2e | p@chr13:58283583..58283607, - |
1.87e-86 | FFCP PHASE1:Mm9::chr8:13414266..13414279,+#_40d70c2e6c9363196e5764093c9b0a2e | p@chr8:13414266..13414279, + |