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UBERON:0003323

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Name:mesenchyme of upper jaw
Namespace:FANTOM
Definition:"A mesenchyme that is part of a upper jaw [Obol]." [OBOL:automatic]
Xrefs:
links:

EHDAA2:0002124
EHDAA:8031
EMAPA:17929

VHOG:0001099
Synonyms: "mesenchyme of palatoquadrate arch" EXACT [OBOL:automatic]
"palatoquadrate arch mesenchyme" EXACT [OBOL:automatic]
"upper jaw mesenchyme" EXACT [OBOL:automatic]

Ontology association
Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.

link to ontology dataset
data


Parents

is_a:UBERON:0004119(endoderm-derived structure),UBERON:0004121(ectoderm-derived structure),UBERON:0009891(facial mesenchyme),UBERON:0010314(structure with developmental contribution from neural crest)
develops_from:UBERON:0009526(maxillary process mesenchyme)
part_of:UBERON:0001709(upper jaw region)



Children

is a:UBERON:0005705 (primary palate mesenchyme)

Ontology Tree: Loaded from BioPortal


FF samples
It includes FANTOM5 samples that overlay the Uberon ontology


Human (Homo sapiens)

  • 10813-111B3 (normal embryonic palatal mesenchymal cell line:HEPM)


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0003323 (mesenchyme of upper jaw), sorted by p-values
Analyst: Hideya Kawaji

link to source dataset
human : data
mouse : data


P-valueFFCPShort description
5.42e-195FFCP PHASE2:Hg19::chr17:54893192..54893195,-#_28635acd2eaa1c9511b2aa7f936b9448p14@C17orf67
5.42e-195FFCP PHASE1:Hg19::chr17:54893192..54893195,-#_28635acd2eaa1c9511b2aa7f936b9448p14@C17orf67
9.37e-99FFCP PHASE1:Hg19::chr17:54893213..54893220,-#_9bb8b10a213c6689fd8e703199815decp12@C17orf67
9.37e-99FFCP PHASE1:Hg19::chr8:57353655..57353662,-#_9bb8b10a213c6689fd8e703199815decp@chr8:57353655..57353662, -
9.37e-99FFCP PHASE2:Hg19::chr17:54893269..54893278,-#_9bb8b10a213c6689fd8e703199815decp11@C17orf67
9.37e-99FFCP PHASE2:Hg19::chr8:57353655..57353662,-#_9bb8b10a213c6689fd8e703199815decp@chr8:57353655..57353662, -
9.37e-99FFCP PHASE1:Hg19::chr17:54893269..54893278,-#_9bb8b10a213c6689fd8e703199815decp11@C17orf67
9.37e-99FFCP PHASE2:Hg19::chr17:54893292..54893300,-#_9bb8b10a213c6689fd8e703199815decp13@C17orf67
9.37e-99FFCP PHASE1:Hg19::chr17:54893292..54893300,-#_9bb8b10a213c6689fd8e703199815decp13@C17orf67
9.37e-99FFCP PHASE2:Hg19::chr17:54893213..54893220,-#_9bb8b10a213c6689fd8e703199815decp12@C17orf67
2.39e-66FFCP PHASE2:Hg19::chr5:75912402..75912418,-#_bb7de7f92a9987d2e230ab1e7d8273a9p@chr5:75912402..75912418, -
2.39e-66FFCP PHASE1:Hg19::chr5:75912402..75912418,-#_bb7de7f92a9987d2e230ab1e7d8273a9p@chr5:75912402..75912418, -
2.39e-66FFCP PHASE1:Hg19::chr4:151503647..151503656,+#_bb7de7f92a9987d2e230ab1e7d8273a9p14@MAB21L2
2.39e-66FFCP PHASE2:Hg19::chr4:151503647..151503656,+#_bb7de7f92a9987d2e230ab1e7d8273a9p14@MAB21L2
4.66e-66FFCP PHASE1:Hg19::chr4:151505582..151505614,+#_8945826718652e3824260a49726f7a08p@chr4:151505582..151505614, +
4.66e-66FFCP PHASE2:Hg19::chr4:151505582..151505614,+#_8945826718652e3824260a49726f7a08p@chr4:151505582..151505614, +
1.46e-50FFCP PHASE2:Hg19::chr3:157823323..157823328,+#_af1f4c83a82a3486ff837f3a61dd4b06p17@RSRC1
1.46e-50FFCP PHASE1:Hg19::chr8:57354278..57354286,+#_af1f4c83a82a3486ff837f3a61dd4b06p@chr8:57354278..57354286, +
1.46e-50FFCP PHASE2:Hg19::chr17:54893196..54893207,-#_af1f4c83a82a3486ff837f3a61dd4b06p9@C17orf67
1.46e-50FFCP PHASE1:Hg19::chr3:157823323..157823328,+#_af1f4c83a82a3486ff837f3a61dd4b06p17@RSRC1
1.46e-50FFCP PHASE2:Hg19::chr8:57354278..57354286,+#_af1f4c83a82a3486ff837f3a61dd4b06+, p@chr8:57354278..57354286
1.46e-50FFCP PHASE1:Hg19::chr17:54893196..54893207,-#_af1f4c83a82a3486ff837f3a61dd4b06p9@C17orf67
2.42e-50FFCP PHASE1:Hg19::chr8:57802672..57802682,-#_2640cf6fdfbde0ed7e31452d996972cbp@chr8:57802672..57802682, -
2.42e-50FFCP PHASE2:Hg19::chr8:57802672..57802682,-#_2640cf6fdfbde0ed7e31452d996972cbp@chr8:57802672..57802682, -
3.99e-50FFCP PHASE2:Hg19::chr12:85673913..85673919,+#_af6ff18d31b9b24f589e1ec6e432397cp7@ALX1
3.99e-50FFCP PHASE1:Hg19::chr12:85673913..85673919,+#_af6ff18d31b9b24f589e1ec6e432397cp7@ALX1
3.99e-50FFCP PHASE2:Hg19::chr17:76930661..76930674,+#_af6ff18d31b9b24f589e1ec6e432397cp1@AK123925
3.99e-50FFCP PHASE2:Hg19::chr5:75913767..75913778,-#_af6ff18d31b9b24f589e1ec6e432397cp@chr5:75913767..75913778, -
3.99e-50FFCP PHASE1:Hg19::chr5:75913767..75913778,-#_af6ff18d31b9b24f589e1ec6e432397cp@chr5:75913767..75913778, -
3.99e-50FFCP PHASE1:Hg19::chr17:76930661..76930674,+#_af6ff18d31b9b24f589e1ec6e432397cp1@AK123925
6.58e-50FFCP PHASE2:Hg19::chr13:28961248..28961262,-#_57d7c9b3bd2006081eefe967d0d99f36p23@FLT1
6.58e-50FFCP PHASE1:Hg19::chr13:28961248..28961262,-#_57d7c9b3bd2006081eefe967d0d99f36p23@FLT1
6.58e-50FFCP PHASE1:Hg19::chr2:33519090..33519092,+#_57d7c9b3bd2006081eefe967d0d99f36p@chr2:33519090..33519092, +
6.58e-50FFCP PHASE2:Hg19::chr2:33519090..33519092,+#_57d7c9b3bd2006081eefe967d0d99f36p@chr2:33519090..33519092, +
6.62e-41FFCP PHASE2:Hg19::chr8:57354143..57354152,+#_da6bbd730252693f7229f40b00debd72p@chr8:57354143..57354152, +
6.62e-41FFCP PHASE2:Hg19::chr8:57353779..57353790,-#_da6bbd730252693f7229f40b00debd72-, p@chr8:57353779..57353790
6.62e-41FFCP PHASE1:Hg19::chr8:57353666..57353675,-#_da6bbd730252693f7229f40b00debd72p@chr8:57353666..57353675, -
6.62e-41FFCP PHASE2:Hg19::chr8:57353666..57353675,-#_da6bbd730252693f7229f40b00debd72p@chr8:57353666..57353675, -
6.62e-41FFCP PHASE1:Hg19::chr8:57354143..57354152,+#_da6bbd730252693f7229f40b00debd72p@chr8:57354143..57354152, +
6.62e-41FFCP PHASE1:Hg19::chr8:57353779..57353790,-#_da6bbd730252693f7229f40b00debd72p@chr8:57353779..57353790, -
1.48e-40FFCP PHASE1:Hg19::chr20:49253452..49253461,-#_8bc495f6d9f7f5e494944fcb297e0120p12@FAM65C
1.48e-40FFCP PHASE2:Hg19::chr1:75600308..75600316,+#_8bc495f6d9f7f5e494944fcb297e0120p8@LHX8
1.48e-40FFCP PHASE1:Hg19::chr1:6615391..6615401,+#_8bc495f6d9f7f5e494944fcb297e0120p2@TAS1R1
1.48e-40FFCP PHASE2:Hg19::chr20:49253452..49253461,-#_8bc495f6d9f7f5e494944fcb297e0120p12@FAM65C
1.48e-40FFCP PHASE1:Hg19::chr1:75600308..75600316,+#_8bc495f6d9f7f5e494944fcb297e0120p8@LHX8
1.48e-40FFCP PHASE2:Hg19::chr1:6615391..6615401,+#_8bc495f6d9f7f5e494944fcb297e0120p2@TAS1R1
2.21e-40FFCP PHASE2:Hg19::chr5:75912831..75912842,-#_202276053b38d5269cd5d0ecd74f2144p@chr5:75912831..75912842, -
2.21e-40FFCP PHASE1:Hg19::chr5:75912831..75912842,-#_202276053b38d5269cd5d0ecd74f2144p@chr5:75912831..75912842, -
2.21e-40FFCP PHASE2:Hg19::chr16:67687543..67687559,-#_202276053b38d5269cd5d0ecd74f2144p@chr16:67687543..67687559, -
2.21e-40FFCP PHASE1:Hg19::chr16:67687543..67687559,-#_202276053b38d5269cd5d0ecd74f2144p@chr16:67687543..67687559, -
3.3e-40FFCP PHASE1:Hg19::chr6:46190219..46190230,-#_4ec876403d002b4dec4b4135b8bbd46dp@chr6:46190219..46190230, -
3.3e-40FFCP PHASE1:Hg19::chr9:125165007..125165016,+#_4ec876403d002b4dec4b4135b8bbd46dp@chr9:125165007..125165016, +
3.3e-40FFCP PHASE2:Hg19::chr6:46190219..46190230,-#_4ec876403d002b4dec4b4135b8bbd46dp@chr6:46190219..46190230, -
3.3e-40FFCP PHASE2:Hg19::chr9:125165007..125165016,+#_4ec876403d002b4dec4b4135b8bbd46dp@chr9:125165007..125165016, +
1.84e-34FFCP PHASE2:Hg19::chr10:15760985..15760992,-#_ad2ba4833510dc6e0d3a3b8e7a5fb75fp@chr10:15760985..15760992, -
1.84e-34FFCP PHASE1:Hg19::chr4:8594472..8594473,+#_ad2ba4833510dc6e0d3a3b8e7a5fb75fp4@CPZ
1.84e-34FFCP PHASE1:Hg19::chr10:15760985..15760992,-#_ad2ba4833510dc6e0d3a3b8e7a5fb75fp@chr10:15760985..15760992, -
1.84e-34FFCP PHASE1:Hg19::chr8:57359557..57359570,-#_ad2ba4833510dc6e0d3a3b8e7a5fb75fp5@PENK
1.84e-34FFCP PHASE2:Hg19::chr8:57359557..57359570,-#_ad2ba4833510dc6e0d3a3b8e7a5fb75fp5@PENK
1.84e-34FFCP PHASE2:Hg19::chr4:8594472..8594473,+#_ad2ba4833510dc6e0d3a3b8e7a5fb75fp4@CPZ
2.58e-34FFCP PHASE2:Hg19::chr14:61125018..61125037,-#_2da0e59bf1d5f2b97264541bdcc04e45p9@SIX1
2.58e-34FFCP PHASE1:Hg19::chr14:61125018..61125037,-#_2da0e59bf1d5f2b97264541bdcc04e45p9@SIX1
5.05e-34FFCP PHASE1:Hg19::chr6:134327986..134327991,-#_2568c8e85a02c9ca2cd1886c3cd87a43p@chr6:134327986..134327991, -
5.05e-34FFCP PHASE2:Hg19::chr6:134327986..134327991,-#_2568c8e85a02c9ca2cd1886c3cd87a43p@chr6:134327986..134327991, -
7.06e-34FFCP PHASE1:Hg19::chr13:58291223..58291226,+#_520c53de7de2b76d1a1724a2817ee6c5p@chr13:58291223..58291226, +
7.06e-34FFCP PHASE2:Hg19::chr13:58291223..58291226,+#_520c53de7de2b76d1a1724a2817ee6c5p@chr13:58291223..58291226, +
7.06e-34FFCP PHASE1:Hg19::chr8:57353676..57353688,-#_520c53de7de2b76d1a1724a2817ee6c5-, p@chr8:57353676..57353688
7.06e-34FFCP PHASE2:Hg19::chr8:57353676..57353688,-#_520c53de7de2b76d1a1724a2817ee6c5p@chr8:57353676..57353688, -
9.85e-34FFCP PHASE1:Hg19::chrX:133792540..133792551,-#_11ec1f58c6c207b48d1eb1c6ae277bc5p4@PLAC1
9.85e-34FFCP PHASE1:Hg19::chr5:127873659..127873667,-#_11ec1f58c6c207b48d1eb1c6ae277bc5p12@FBN2
9.85e-34FFCP PHASE1:Hg19::chr5:19721484..19721507,-#_11ec1f58c6c207b48d1eb1c6ae277bc5p@chr5:19721484..19721507, -
9.85e-34FFCP PHASE2:Hg19::chr5:127873659..127873667,-#_11ec1f58c6c207b48d1eb1c6ae277bc5p12@FBN2
9.85e-34FFCP PHASE2:Hg19::chrX:133792540..133792551,-#_11ec1f58c6c207b48d1eb1c6ae277bc5p4@PLAC1
9.85e-34FFCP PHASE2:Hg19::chr5:19721484..19721507,-#_11ec1f58c6c207b48d1eb1c6ae277bc5-, p@chr5:19721484..19721507
7.48e-30FFCP PHASE1:Hg19::chr8:57353804..57353821,-#_8daa6bcb495e13c8ee1aab865de3b8e9p@chr8:57353804..57353821, -
7.48e-30FFCP PHASE2:Hg19::chr8:57353804..57353821,-#_8daa6bcb495e13c8ee1aab865de3b8e9p@chr8:57353804..57353821, -
7.48e-30FFCP PHASE1:Hg19::chr8:57354360..57354367,+#_8daa6bcb495e13c8ee1aab865de3b8e9p@chr8:57354360..57354367, +
7.48e-30FFCP PHASE2:Hg19::chr8:57354360..57354367,+#_8daa6bcb495e13c8ee1aab865de3b8e9+, p@chr8:57354360..57354367
7.48e-30FFCP PHASE1:Hg19::chr8:57353982..57353991,-#_8daa6bcb495e13c8ee1aab865de3b8e9-, p@chr8:57353982..57353991
7.48e-30FFCP PHASE2:Hg19::chr8:57353982..57353991,-#_8daa6bcb495e13c8ee1aab865de3b8e9p@chr8:57353982..57353991, -
9.99e-30FFCP PHASE1:Hg19::chr3:157824322..157824334,-#_70e28576279e89ec039b5e07d20547bbp7@SHOX2
9.99e-30FFCP PHASE2:Hg19::chr3:157824322..157824334,-#_70e28576279e89ec039b5e07d20547bbp7@SHOX2
9.99e-30FFCP PHASE2:Hg19::chr10:15762107..15762114,-#_70e28576279e89ec039b5e07d20547bbp10@ITGA8
9.99e-30FFCP PHASE1:Hg19::chr10:15762107..15762114,-#_70e28576279e89ec039b5e07d20547bbp10@ITGA8
1.33e-29FFCP PHASE2:Hg19::chr22:28193943..28193956,-#_b703f2c7e95eb19e57b5a7adf7ffbb6cp@chr22:28193943..28193956, -
1.33e-29FFCP PHASE1:Hg19::chrX:132670143..132670152,-#_b703f2c7e95eb19e57b5a7adf7ffbb6cp@chrX:132670143..132670152, -
1.33e-29FFCP PHASE1:Hg19::chr17:79071218..79071221,-#_b703f2c7e95eb19e57b5a7adf7ffbb6cp@chr17:79071218..79071221, -
1.33e-29FFCP PHASE2:Hg19::chrX:132670143..132670152,-#_b703f2c7e95eb19e57b5a7adf7ffbb6cp@chrX:132670143..132670152, -
1.33e-29FFCP PHASE2:Hg19::chr17:79071218..79071221,-#_b703f2c7e95eb19e57b5a7adf7ffbb6cp@chr17:79071218..79071221, -
1.33e-29FFCP PHASE1:Hg19::chr22:28193943..28193956,-#_b703f2c7e95eb19e57b5a7adf7ffbb6cp@chr22:28193943..28193956, -
1.78e-29FFCP PHASE2:Hg19::chr1:21904551..21904569,-#_488bed99401103bebb37676a81172843p@chr1:21904551..21904569, -
1.78e-29FFCP PHASE1:Hg19::chr1:21904551..21904569,-#_488bed99401103bebb37676a81172843p@chr1:21904551..21904569, -
3.16e-29FFCP PHASE2:Hg19::chr8:57359975..57359992,-#_04da9138d3b6940bf3bf9ee977ada00e-, p@chr8:57359975..57359992
3.16e-29FFCP PHASE2:Hg19::chr1:156470861..156470868,-#_04da9138d3b6940bf3bf9ee977ada00ep18@MEF2D
3.16e-29FFCP PHASE1:Hg19::chr1:156470861..156470868,-#_04da9138d3b6940bf3bf9ee977ada00ep18@MEF2D
3.16e-29FFCP PHASE2:Hg19::chr14:89044406..89044416,+#_04da9138d3b6940bf3bf9ee977ada00ep@chr14:89044406..89044416, +
3.16e-29FFCP PHASE1:Hg19::chr14:89044406..89044416,+#_04da9138d3b6940bf3bf9ee977ada00ep@chr14:89044406..89044416, +
3.16e-29FFCP PHASE1:Hg19::chr8:57359975..57359992,-#_04da9138d3b6940bf3bf9ee977ada00ep@chr8:57359975..57359992, -
4.2e-29FFCP PHASE2:Hg19::chr10:28033565..28033575,-#_8f57fc24614143d18cefd77b04bd7785p@chr10:28033565..28033575, -
4.2e-29FFCP PHASE2:Hg19::chr1:6615468..6615485,+#_8f57fc24614143d18cefd77b04bd7785p1@TAS1R1