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UBERON:0003351

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Name:pharyngeal epithelium
Namespace:FANTOM
Definition:"An epithelium that is part of a pharynx [Obol]." [OBOL:automatic]
Xrefs:
links:

EMAPA:16551
EMAPA:16708
MA:0002725
RETIRED_EHDAA2:0001460
TAO:0001174
XAO:0003202

ZFA:0001174
Synonyms: "epithelial tissue of pharynx" EXACT [OBOL:automatic]
"epithelium of pharynx" EXACT [OBOL:automatic]
"pharynx epithelial tissue" EXACT [OBOL:automatic]
"pharynx epithelium" EXACT [OBOL:automatic]
Subset: vertebrate_core

Ontology association
Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.

link to ontology dataset
data


Parents

is_a:UBERON:0003929(gut epithelium),UBERON:0004807(respiratory system epithelium),UBERON:0005911(endo-epithelium)
develops_from:UBERON:0007690(early pharyngeal endoderm)
part_of:UBERON:0001042(chordate pharynx)



Children

is a:UBERON:0005562 (thymus primordium)

Ontology Tree: Loaded from BioPortal


FF samples
It includes FANTOM5 samples that overlay the Uberon ontology




Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0003351 (pharyngeal epithelium), sorted by p-values
Analyst: Hideya Kawaji

link to source dataset
human : data
mouse : data


P-valueFFCPShort description
1.83e-98FFCP PHASE1:Hg19::chr11:94587086..94587097,+#_eb5f65a8a89c40b9ba146c3ed92df265p19@AMOTL1
1.83e-98FFCP PHASE1:Hg19::chr14:22928012..22928031,+#_eb5f65a8a89c40b9ba146c3ed92df265p3@uc001wea.3, p3@uc010ajt.2, p3@uc010aju.1
1.83e-98FFCP PHASE2:Hg19::chr11:94587086..94587097,+#_eb5f65a8a89c40b9ba146c3ed92df265p19@AMOTL1
1.83e-98FFCP PHASE2:Hg19::chr14:22928012..22928031,+#_eb5f65a8a89c40b9ba146c3ed92df265p3@uc001wea.3, p3@uc010ajt.2, p3@uc010aju.1
2.58e-74FFCP PHASE2:Hg19::chr14:22927984..22927999,+#_74d10a5dcbda517dd54d1e4427e99860p4@uc001wea.3, p4@uc010ajt.2, p4@uc010aju.1
2.58e-74FFCP PHASE1:Hg19::chr14:22927984..22927999,+#_74d10a5dcbda517dd54d1e4427e99860p4@uc001wea.3, p4@uc010ajt.2, p4@uc010aju.1
1.76e-68FFCP PHASE2:Mm9::chr6:41483113..41483131,+#_dd1bf493a82e8d4251eb4be92178d967p4@uc009bpa.1
1.76e-68FFCP PHASE1:Mm9::chr6:41483113..41483131,+#_dd1bf493a82e8d4251eb4be92178d967p4@uc009bpa.1
2.4e-67FFCP PHASE2:Mm9::chr6:41483037..41483046,+#_61a0d4089c3a67df0a5d55ec13bcfc3ap8@uc009bpa.1
2.4e-67FFCP PHASE1:Mm9::chr6:41483037..41483046,+#_61a0d4089c3a67df0a5d55ec13bcfc3ap8@uc009bpa.1
2.83e-66FFCP PHASE2:Hg19::chr3:34517538..34517551,+#_a17b34eef5c13577f74b7658a2b87f7cp@chr3:34517538..34517551, +
2.83e-66FFCP PHASE2:Hg19::chr3:34517741..34517784,+#_a17b34eef5c13577f74b7658a2b87f7cp@chr3:34517741..34517784, +
2.83e-66FFCP PHASE2:Hg19::chr3:35682974..35682982,+#_a17b34eef5c13577f74b7658a2b87f7cp45@ARPP21
2.83e-66FFCP PHASE2:Hg19::chr3:35683004..35683015,+#_a17b34eef5c13577f74b7658a2b87f7cp42@ARPP21
2.83e-66FFCP PHASE2:Hg19::chr3:35696112..35696151,-#_a17b34eef5c13577f74b7658a2b87f7cp@chr3:35696112..35696151, -
2.83e-66FFCP PHASE2:Hg19::chr3:35701302..35701317,-#_a17b34eef5c13577f74b7658a2b87f7cp@chr3:35701302..35701317, -
2.83e-66FFCP PHASE2:Hg19::chr15:56940722..56940731,+#_a17b34eef5c13577f74b7658a2b87f7cp@chr15:56940722..56940731, +
2.83e-66FFCP PHASE2:Hg19::chr15:56940732..56940741,+#_a17b34eef5c13577f74b7658a2b87f7cp@chr15:56940732..56940741, +
2.83e-66FFCP PHASE2:Hg19::chr15:57017749..57017755,-#_a17b34eef5c13577f74b7658a2b87f7cp@chr15:57017749..57017755, -
2.83e-66FFCP PHASE2:Hg19::chr15:58069384..58069408,+#_a17b34eef5c13577f74b7658a2b87f7cp@chr15:58069384..58069408, +
2.83e-66FFCP PHASE2:Hg19::chr15:58069582..58069594,+#_a17b34eef5c13577f74b7658a2b87f7cp@chr15:58069582..58069594, +
2.83e-66FFCP PHASE2:Hg19::chr15:58069597..58069604,+#_a17b34eef5c13577f74b7658a2b87f7cp@chr15:58069597..58069604, +
2.83e-66FFCP PHASE2:Hg19::chr15:58069758..58069762,+#_a17b34eef5c13577f74b7658a2b87f7cp@chr15:58069758..58069762, +
2.83e-66FFCP PHASE2:Hg19::chr15:58920068..58920073,-#_a17b34eef5c13577f74b7658a2b87f7cp@chr15:58920068..58920073, -
2.83e-66FFCP PHASE2:Hg19::chr15:60131313..60131324,-#_a17b34eef5c13577f74b7658a2b87f7cp@chr15:60131313..60131324, -
2.83e-66FFCP PHASE2:Hg19::chr15:60131337..60131352,-#_a17b34eef5c13577f74b7658a2b87f7cp@chr15:60131337..60131352, -
2.83e-66FFCP PHASE2:Hg19::chr15:60131355..60131365,-#_a17b34eef5c13577f74b7658a2b87f7cp@chr15:60131355..60131365, -
2.83e-66FFCP PHASE1:Hg19::chrX:123539454..123539467,-#_a17b34eef5c13577f74b7658a2b87f7cp@chrX:123539454..123539467, -
2.83e-66FFCP PHASE1:Hg19::chrX:123871044..123871053,-#_a17b34eef5c13577f74b7658a2b87f7cp@chrX:123871044..123871053, -
2.83e-66FFCP PHASE2:Hg19::chr15:99071828..99071840,+#_a17b34eef5c13577f74b7658a2b87f7cp@chr15:99071828..99071840, +
2.83e-66FFCP PHASE1:Hg19::chr10:11486829..11486836,+#_a17b34eef5c13577f74b7658a2b87f7cp@chr10:11486829..11486836, +
2.83e-66FFCP PHASE1:Hg19::chr10:11486877..11486886,+#_a17b34eef5c13577f74b7658a2b87f7cp@chr10:11486877..11486886, +
2.83e-66FFCP PHASE1:Hg19::chr10:115022988..115023001,+#_a17b34eef5c13577f74b7658a2b87f7cp@chr10:115022988..115023001, +
2.83e-66FFCP PHASE1:Hg19::chr10:115023005..115023015,+#_a17b34eef5c13577f74b7658a2b87f7cp@chr10:115023005..115023015, +
2.83e-66FFCP PHASE1:Hg19::chr10:115023055..115023072,+#_a17b34eef5c13577f74b7658a2b87f7cp@chr10:115023055..115023072, +
2.83e-66FFCP PHASE1:Hg19::chr10:115023094..115023106,+#_a17b34eef5c13577f74b7658a2b87f7cp@chr10:115023094..115023106, +
2.83e-66FFCP PHASE1:Hg19::chr10:26726728..26726731,+#_a17b34eef5c13577f74b7658a2b87f7cp17@APBB1IP
2.83e-66FFCP PHASE1:Hg19::chr10:72542272..72542281,-#_a17b34eef5c13577f74b7658a2b87f7cp6@C10orf27
2.83e-66FFCP PHASE1:Hg19::chr11:36589389..36589398,-#_a17b34eef5c13577f74b7658a2b87f7cp@chr11:36589389..36589398, -
2.83e-66FFCP PHASE1:Hg19::chr11:36622593..36622605,+#_a17b34eef5c13577f74b7658a2b87f7cp@chr11:36622593..36622605, +
2.83e-66FFCP PHASE1:Hg19::chr11:6953654..6953661,+#_a17b34eef5c13577f74b7658a2b87f7cp5@ZNF215
2.83e-66FFCP PHASE1:Hg19::chr11:8954087..8954092,-#_a17b34eef5c13577f74b7658a2b87f7cp1@AB527792
2.83e-66FFCP PHASE1:Hg19::chr12:123559708..123559720,-#_a17b34eef5c13577f74b7658a2b87f7cp@chr12:123559708..123559720, -
2.83e-66FFCP PHASE1:Hg19::chr12:123559773..123559784,-#_a17b34eef5c13577f74b7658a2b87f7cp@chr12:123559773..123559784, -
2.83e-66FFCP PHASE1:Hg19::chr12:123560608..123560615,-#_a17b34eef5c13577f74b7658a2b87f7cp24@PITPNM2
2.83e-66FFCP PHASE1:Hg19::chr12:123560793..123560802,+#_a17b34eef5c13577f74b7658a2b87f7cp@chr12:123560793..123560802, +
2.83e-66FFCP PHASE1:Hg19::chr12:123607146..123607168,-#_a17b34eef5c13577f74b7658a2b87f7cp@chr12:123607146..123607168, -
2.83e-66FFCP PHASE1:Hg19::chr12:123627753..123627760,+#_a17b34eef5c13577f74b7658a2b87f7cp@chr12:123627753..123627760, +
2.83e-66FFCP PHASE1:Hg19::chr12:123634449..123634460,-#_a17b34eef5c13577f74b7658a2b87f7cp25@PITPNM2
2.83e-66FFCP PHASE1:Hg19::chr12:123636839..123636885,-#_a17b34eef5c13577f74b7658a2b87f7cp@chr12:123636839..123636885, -
2.83e-66FFCP PHASE1:Hg19::chr12:133413547..133413557,-#_a17b34eef5c13577f74b7658a2b87f7cp13@POLE
2.83e-66FFCP PHASE1:Hg19::chr12:133414662..133414671,-#_a17b34eef5c13577f74b7658a2b87f7cp@chr12:133414662..133414671, -
2.83e-66FFCP PHASE1:Hg19::chr12:47205180..47205187,+#_a17b34eef5c13577f74b7658a2b87f7cp@chr12:47205180..47205187, +
2.83e-66FFCP PHASE1:Hg19::chr12:48225126..48225164,+#_a17b34eef5c13577f74b7658a2b87f7cp1@ENST00000548564, p1@ENST00000550720, p1@ENST00000550909
2.83e-66FFCP PHASE1:Hg19::chr12:48227243..48227269,+#_a17b34eef5c13577f74b7658a2b87f7cp@chr12:48227243..48227269, +
2.83e-66FFCP PHASE1:Hg19::chr12:59432175..59432191,+#_a17b34eef5c13577f74b7658a2b87f7cp@chr12:59432175..59432191, +
2.83e-66FFCP PHASE1:Hg19::chr13:99628323..99628332,-#_a17b34eef5c13577f74b7658a2b87f7cp@chr13:99628323..99628332, -
2.83e-66FFCP PHASE1:Hg19::chr13:99628347..99628352,-#_a17b34eef5c13577f74b7658a2b87f7cp@chr13:99628347..99628352, -
2.83e-66FFCP PHASE1:Hg19::chr13:99628369..99628374,-#_a17b34eef5c13577f74b7658a2b87f7cp@chr13:99628369..99628374, -
2.83e-66FFCP PHASE1:Hg19::chr13:99628388..99628399,-#_a17b34eef5c13577f74b7658a2b87f7cp@chr13:99628388..99628399, -
2.83e-66FFCP PHASE1:Hg19::chr14:22942319..22942322,+#_a17b34eef5c13577f74b7658a2b87f7cp4@uc001wec.2
2.83e-66FFCP PHASE1:Hg19::chr14:98229095..98229108,-#_a17b34eef5c13577f74b7658a2b87f7cp1@ENST00000555187
2.83e-66FFCP PHASE1:Hg19::chr15:56940722..56940731,+#_a17b34eef5c13577f74b7658a2b87f7cp@chr15:56940722..56940731, +
2.83e-66FFCP PHASE1:Hg19::chr15:56940732..56940741,+#_a17b34eef5c13577f74b7658a2b87f7cp@chr15:56940732..56940741, +
2.83e-66FFCP PHASE1:Hg19::chr15:57017749..57017755,-#_a17b34eef5c13577f74b7658a2b87f7cp@chr15:57017749..57017755, -
2.83e-66FFCP PHASE1:Hg19::chr15:58069384..58069408,+#_a17b34eef5c13577f74b7658a2b87f7cp@chr15:58069384..58069408, +
2.83e-66FFCP PHASE1:Hg19::chr15:58069582..58069594,+#_a17b34eef5c13577f74b7658a2b87f7cp@chr15:58069582..58069594, +
2.83e-66FFCP PHASE1:Hg19::chr15:58069597..58069604,+#_a17b34eef5c13577f74b7658a2b87f7cp@chr15:58069597..58069604, +
2.83e-66FFCP PHASE1:Hg19::chr15:58069758..58069762,+#_a17b34eef5c13577f74b7658a2b87f7cp@chr15:58069758..58069762, +
2.83e-66FFCP PHASE1:Hg19::chr15:58920068..58920073,-#_a17b34eef5c13577f74b7658a2b87f7cp@chr15:58920068..58920073, -
2.83e-66FFCP PHASE1:Hg19::chr15:60131313..60131324,-#_a17b34eef5c13577f74b7658a2b87f7cp@chr15:60131313..60131324, -
2.83e-66FFCP PHASE1:Hg19::chr15:60131337..60131352,-#_a17b34eef5c13577f74b7658a2b87f7cp@chr15:60131337..60131352, -
2.83e-66FFCP PHASE1:Hg19::chr15:60131355..60131365,-#_a17b34eef5c13577f74b7658a2b87f7cp@chr15:60131355..60131365, -
2.83e-66FFCP PHASE1:Hg19::chr15:99071828..99071840,+#_a17b34eef5c13577f74b7658a2b87f7cp@chr15:99071828..99071840, +
2.83e-66FFCP PHASE1:Hg19::chr16:49633750..49633778,-#_a17b34eef5c13577f74b7658a2b87f7cp@chr16:49633750..49633778, -
2.83e-66FFCP PHASE1:Hg19::chr16:74359040..74359071,+#_a17b34eef5c13577f74b7658a2b87f7cp@chr16:74359040..74359071, +
2.83e-66FFCP PHASE1:Hg19::chr17:4090402..4090406,-#_a17b34eef5c13577f74b7658a2b87f7cp@chr17:4090402..4090406, -
2.83e-66FFCP PHASE1:Hg19::chr17:76274572..76274581,-#_a17b34eef5c13577f74b7658a2b87f7cp4@ENST00000374945
2.83e-66FFCP PHASE1:Hg19::chr17:76274646..76274658,-#_a17b34eef5c13577f74b7658a2b87f7cp2@ENST00000374945
2.83e-66FFCP PHASE1:Hg19::chr17:80866179..80866188,+#_a17b34eef5c13577f74b7658a2b87f7cp@chr17:80866179..80866188, +
2.83e-66FFCP PHASE1:Hg19::chr18:13437980..13437986,+#_a17b34eef5c13577f74b7658a2b87f7cp@chr18:13437980..13437986, +
2.83e-66FFCP PHASE1:Hg19::chr19:28877072..28877084,-#_a17b34eef5c13577f74b7658a2b87f7cp@chr19:28877072..28877084, -
2.83e-66FFCP PHASE1:Hg19::chr1:158170478..158170491,-#_a17b34eef5c13577f74b7658a2b87f7cp@chr1:158170478..158170491, -
2.83e-66FFCP PHASE1:Hg19::chr1:158226030..158226041,+#_a17b34eef5c13577f74b7658a2b87f7cp@chr1:158226030..158226041, +
2.83e-66FFCP PHASE1:Hg19::chr1:158259849..158259854,+#_a17b34eef5c13577f74b7658a2b87f7cp11@CD1C
2.83e-66FFCP PHASE1:Hg19::chr1:158260453..158260459,-#_a17b34eef5c13577f74b7658a2b87f7cp@chr1:158260453..158260459, -
2.83e-66FFCP PHASE1:Hg19::chr1:158260649..158260652,+#_a17b34eef5c13577f74b7658a2b87f7cp13@CD1C
2.83e-66FFCP PHASE1:Hg19::chr1:158301280..158301298,+#_a17b34eef5c13577f74b7658a2b87f7cp@chr1:158301280..158301298, +
2.83e-66FFCP PHASE1:Hg19::chr1:158303678..158303720,-#_a17b34eef5c13577f74b7658a2b87f7cp@chr1:158303678..158303720, -
2.83e-66FFCP PHASE1:Hg19::chr1:158332631..158332640,+#_a17b34eef5c13577f74b7658a2b87f7cp@chr1:158332631..158332640, +
2.83e-66FFCP PHASE1:Hg19::chr1:158334207..158334219,-#_a17b34eef5c13577f74b7658a2b87f7cp1@AK128347
2.83e-66FFCP PHASE1:Hg19::chr1:160643269..160643276,+#_a17b34eef5c13577f74b7658a2b87f7cp5@ENST00000443928
2.83e-66FFCP PHASE1:Hg19::chr1:160643289..160643296,+#_a17b34eef5c13577f74b7658a2b87f7cp4@ENST00000443928
2.83e-66FFCP PHASE1:Hg19::chr1:194245598..194245600,-#_a17b34eef5c13577f74b7658a2b87f7cp@chr1:194245598..194245600, -
2.83e-66FFCP PHASE1:Hg19::chr1:199026759..199026762,+#_a17b34eef5c13577f74b7658a2b87f7cp@chr1:199026759..199026762, +
2.83e-66FFCP PHASE1:Hg19::chr1:200500161..200500173,-#_a17b34eef5c13577f74b7658a2b87f7cp@chr1:200500161..200500173, -
2.83e-66FFCP PHASE1:Hg19::chr1:204494413..204494420,+#_a17b34eef5c13577f74b7658a2b87f7cp17@MDM4
2.83e-66FFCP PHASE1:Hg19::chr1:204494427..204494436,+#_a17b34eef5c13577f74b7658a2b87f7cp15@MDM4
2.83e-66FFCP PHASE1:Hg19::chr1:204507243..204507252,+#_a17b34eef5c13577f74b7658a2b87f7cp19@MDM4
2.83e-66FFCP PHASE1:Hg19::chr1:2084380..2084413,-#_a17b34eef5c13577f74b7658a2b87f7cp@chr1:2084380..2084413, -










Property "Property value" (as page type) with input value "UBPROP:0000001 "Epithelium lining the pharynx consisting largely of simple columnar epithelium with a short segment (1mm) of stratified squamous epithelium on the ventral side. Chen et al, 2007.[TAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.