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UBERON:0003528

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Name:brain grey matter
Namespace:FANTOM
Definition:"A gray matter of neuraxis that is part of a brain [Obol]." [OBOL:automatic]
Xrefs:
links:

MA:0000810

ncithesaurus:Cerebral_Gray_Matter
Synonyms: "brain gray matter" EXACT [OBOL:automatic]
"brain gray matter of neuraxis" EXACT [OBOL:automatic]
"brain grey substance" EXACT [OBOL:automatic]
"gray matter of brain" EXACT [OBOL:automatic]
"gray matter of neuraxis of brain" EXACT [OBOL:automatic]
"grey matter of brain" EXACT [OBOL:automatic]
"grey substance of brain" EXACT [OBOL:automatic]

Ontology association
Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.

link to ontology dataset
data


Parents

is_a:UBERON:0002020(gray matter)
part_of:UBERON:0000955(brain)



Children

is a:UBERON:0002420 (basal ganglion),UBERON:0006514 (pallidum),UBERON:0010122 (future caudate nucleus),UBERON:0011300 (gray matter of telencephalon)
part of:UBERON:0002308 (nucleus of brain)

Ontology Tree: Loaded from BioPortal


FF samples
It includes FANTOM5 samples that overlay the Uberon ontology


Human (Homo sapiens)

... further results Mouse (Mus musculus)

... further results


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0003528 (brain grey matter), sorted by p-values
Analyst: Hideya Kawaji

link to source dataset
human : data
mouse : data


P-valueFFCPShort description
2.77e-120FFCP PHASE1:Hg19::chr11:49582389..49582417,+#_9271de7c742b723d644ab2015727346bp1@ENST00000527477, p1@ENST00000530858
2.77e-120FFCP PHASE2:Hg19::chr11:49582389..49582417,+#_9271de7c742b723d644ab2015727346bp1@ENST00000527477, p1@ENST00000530858
3.69e-119FFCP PHASE1:Hg19::chr14:24047743..24047754,-#_0ec275c9aeb300eae2199babfd3deccdp12@JPH4
3.69e-119FFCP PHASE2:Hg19::chr14:24047743..24047754,-#_0ec275c9aeb300eae2199babfd3deccdp12@JPH4
3.97e-118FFCP PHASE2:Hg19::chr12:11652664..11652681,+#_d53101bc2f8234549ccad72a715cdfd9p@chr12:11652664..11652681, +
3.97e-118FFCP PHASE1:Hg19::chr12:11652664..11652681,+#_d53101bc2f8234549ccad72a715cdfd9p@chr12:11652664..11652681, +
2.4e-117FFCP PHASE2:Hg19::chr4:6474472..6474528,-#_67ead9750b27e4759c82190a9a935ac6p6@PPP2R2C
2.4e-117FFCP PHASE1:Hg19::chr4:6474472..6474528,-#_67ead9750b27e4759c82190a9a935ac6p6@PPP2R2C
2.24e-116FFCP PHASE1:Hg19::chr2:210444748..210444770,+#_f8e5519d53876999fab56a19e55eb0c4p20@MAP2
2.24e-116FFCP PHASE2:Hg19::chr2:210444748..210444770,+#_f8e5519d53876999fab56a19e55eb0c4p20@MAP2
6.97e-116FFCP PHASE1:Hg19::chr7:150748288..150748337,+#_acd727aedf8ebf32f52788fd124577bbp1@ACCN3
6.97e-116FFCP PHASE2:Hg19::chr7:150748288..150748337,+#_acd727aedf8ebf32f52788fd124577bbp1@ACCN3
4.01e-115FFCP PHASE2:Hg19::chr19:54462732..54462743,+#_428261e42ef78e1ec8f7713fb23ebef3p@chr19:54462732..54462743, +
4.01e-115FFCP PHASE1:Hg19::chr19:54462732..54462743,+#_428261e42ef78e1ec8f7713fb23ebef3p@chr19:54462732..54462743, +
1.14e-114FFCP PHASE1:Hg19::chr12:14133429..14133438,-#_3470971641e9b2f082694db33ce256cfp3@GRIN2B
1.14e-114FFCP PHASE2:Hg19::chr12:14133429..14133438,-#_3470971641e9b2f082694db33ce256cfp3@GRIN2B
3.44e-114FFCP PHASE1:Hg19::chr19:55794942..55794982,+#_df0218af0efc9258b2aa534f17b4dbf9p@chr19:55794942..55794982, +
3.44e-114FFCP PHASE2:Hg19::chr19:55794942..55794982,+#_df0218af0efc9258b2aa534f17b4dbf9p@chr19:55794942..55794982, +
4.09e-114FFCP PHASE1:Hg19::chr2:115200192..115200244,+#_68ac70504cb4a7816b5d5118acf35e9dp3@DPP10
4.09e-114FFCP PHASE2:Hg19::chr2:115200192..115200244,+#_68ac70504cb4a7816b5d5118acf35e9dp3@DPP10
5.07e-114FFCP PHASE2:Hg19::chr19:54462276..54462325,+#_715985557c8b462e92800bc8768b86bcp@chr19:54462276..54462325, +
5.07e-114FFCP PHASE1:Hg19::chr19:54462276..54462325,+#_715985557c8b462e92800bc8768b86bcp@chr19:54462276..54462325, +
1.45e-113FFCP PHASE1:Hg19::chr16:24267508..24267525,+#_39be679d86f25ccc1f5cebc1414dfa02p4@CACNG3
1.45e-113FFCP PHASE2:Hg19::chr16:24267508..24267525,+#_39be679d86f25ccc1f5cebc1414dfa02p4@CACNG3
2.01e-113FFCP PHASE2:Hg19::chr20:1975321..1975338,-#_527772739c511ea8f9fbac0dfd4ab9f9p3@PDYN
2.01e-113FFCP PHASE1:Hg19::chr20:1975321..1975338,-#_527772739c511ea8f9fbac0dfd4ab9f9p3@PDYN
9.5e-113FFCP PHASE2:Hg19::chr5:160975135..160975218,-#_913c7b68487a1080163b5a908871910cp3@GABRB2
9.5e-113FFCP PHASE1:Hg19::chr5:160975135..160975218,-#_913c7b68487a1080163b5a908871910cp3@GABRB2
1.47e-112FFCP PHASE1:Hg19::chr11:133402367..133402378,-#_bb09554c5445937fadcb09f42b47ee33p8@OPCML
1.47e-112FFCP PHASE2:Hg19::chr11:133402367..133402378,-#_bb09554c5445937fadcb09f42b47ee33p8@OPCML
2.02e-112FFCP PHASE2:Hg19::chr12:14134636..14134651,-#_e3d6546d2e69f73f0d06edf7fc168064p@chr12:14134636..14134651, -
2.02e-112FFCP PHASE1:Hg19::chr12:14134636..14134651,-#_e3d6546d2e69f73f0d06edf7fc168064p@chr12:14134636..14134651, -
4.68e-112FFCP PHASE1:Hg19::chr4:6474536..6474563,-#_d0fcdb84f0af3556c24f2131b5457bd6p9@PPP2R2C
4.68e-112FFCP PHASE2:Hg19::chr4:6474536..6474563,-#_d0fcdb84f0af3556c24f2131b5457bd6p9@PPP2R2C
2.32e-111FFCP PHASE2:Hg19::chr18:55019840..55019850,+#_17d5876204aa8239156ec22aa50188fcp5@ST8SIA3
2.32e-111FFCP PHASE1:Hg19::chr18:55019840..55019850,+#_17d5876204aa8239156ec22aa50188fcp5@ST8SIA3
2.51e-111FFCP PHASE1:Hg19::chr19:54462535..54462548,+#_e3fc09181a2d6669f873632f03ded60bp@chr19:54462535..54462548, +
2.51e-111FFCP PHASE2:Hg19::chr19:54462535..54462548,+#_e3fc09181a2d6669f873632f03ded60bp@chr19:54462535..54462548, +
4.73e-111FFCP PHASE2:Hg19::chr11:133402410..133402434,-#_45de49b47a2fcad033b4d4f24bdec680p5@OPCML
4.73e-111FFCP PHASE1:Hg19::chr11:133402410..133402434,-#_45de49b47a2fcad033b4d4f24bdec680p5@OPCML
8.62e-111FFCP PHASE2:Hg19::chr5:80255907..80255942,+#_77b33c4a3e5c3bc92f7e6b747d7e09b5p@chr5:80255907..80255942, +
8.62e-111FFCP PHASE1:Hg19::chr5:80255907..80255942,+#_77b33c4a3e5c3bc92f7e6b747d7e09b5p@chr5:80255907..80255942, +
2.43e-110FFCP PHASE1:Hg19::chr6:62390886..62390903,-#_f2ecc6faf527baa3b57e7f141f163a4ep1@ENST00000511849
2.43e-110FFCP PHASE2:Hg19::chr6:62390886..62390903,-#_f2ecc6faf527baa3b57e7f141f163a4ep1@ENST00000511849
3.36e-110FFCP PHASE2:Hg19::chr6:108487289..108487302,+#_d946b299f9ea81ea0d2771bd0a454f0bp1@NR2E1
3.36e-110FFCP PHASE1:Hg19::chr6:108487289..108487302,+#_d946b299f9ea81ea0d2771bd0a454f0bp1@NR2E1
5.09e-110FFCP PHASE1:Hg19::chr9:112629512..112629528,+#_6333c1638c793a6078010724e7918405p7@PALM2
5.09e-110FFCP PHASE2:Hg19::chr9:112629512..112629528,+#_6333c1638c793a6078010724e7918405p7@PALM2
8.14e-110FFCP PHASE2:Hg19::chrX:152939089..152939119,-#_b03387ba66bfd24226ef8b8290365e30p2@PNCK
8.14e-110FFCP PHASE1:Hg19::chrX:152939089..152939119,-#_b03387ba66bfd24226ef8b8290365e30p2@PNCK
3.28e-109FFCP PHASE2:Hg19::chr5:27038708..27038730,-#_3f2eb8f7784fb99ffc74705e3e3e7576p2@CDH9
3.28e-109FFCP PHASE1:Hg19::chr5:27038708..27038730,-#_3f2eb8f7784fb99ffc74705e3e3e7576p2@CDH9
8.01e-109FFCP PHASE2:Hg19::chr19:54462010..54462060,+#_fe5347d6db7926104fe263fbdc3d4cc1p@chr19:54462010..54462060, +
8.01e-109FFCP PHASE1:Hg19::chr19:54462010..54462060,+#_fe5347d6db7926104fe263fbdc3d4cc1p@chr19:54462010..54462060, +
8.43e-109FFCP PHASE2:Hg19::chr9:112629781..112629806,+#_c1eff915d73da48ee9e0d09ca8c964bep14@PALM2-AKAP2
8.43e-109FFCP PHASE1:Hg19::chr9:112629781..112629806,+#_c1eff915d73da48ee9e0d09ca8c964bep14@PALM2-AKAP2
1.04e-108FFCP PHASE2:Hg19::chr15:80735246..80735321,+#_bcc6ec3faeb5c2b9c258a3b4f9af25adp3@ARNT2
1.04e-108FFCP PHASE1:Hg19::chr15:80735246..80735321,+#_bcc6ec3faeb5c2b9c258a3b4f9af25adp3@ARNT2
1.61e-108FFCP PHASE1:Hg19::chr11:89867681..89867695,+#_e157d2de913f20a7b221616d484a6535p2@NAALAD2
1.61e-108FFCP PHASE2:Hg19::chr11:89867681..89867695,+#_e157d2de913f20a7b221616d484a6535p2@NAALAD2
2.01e-108FFCP PHASE2:Hg19::chr1:70033108..70033121,+#_d523738c4da413a961d175127c81cd60p8@LRRC7
2.01e-108FFCP PHASE1:Hg19::chr1:70033108..70033121,+#_d523738c4da413a961d175127c81cd60p8@LRRC7
2.37e-108FFCP PHASE1:Hg19::chr11:132982177..132982181,-#_457fe7a7ed15dc71e62ad806182752a7p@chr11:132982177..132982181, -
2.37e-108FFCP PHASE2:Hg19::chr11:132982177..132982181,-#_457fe7a7ed15dc71e62ad806182752a7p@chr11:132982177..132982181, -
3.44e-108FFCP PHASE2:Hg19::chr6:155538093..155538109,+#_c7e17c03338dbeaa4e503bf285de4f67p2@TIAM2
3.44e-108FFCP PHASE1:Hg19::chr6:155538093..155538109,+#_c7e17c03338dbeaa4e503bf285de4f67p2@TIAM2
3.59e-108FFCP PHASE2:Hg19::chr19:54462560..54462571,+#_d08e5f8f3dee3e8d1aaabeac4299e25cp@chr19:54462560..54462571, +
3.59e-108FFCP PHASE1:Hg19::chr19:54462560..54462571,+#_d08e5f8f3dee3e8d1aaabeac4299e25cp@chr19:54462560..54462571, +
4.72e-108FFCP PHASE1:Hg19::chr17:77090555..77090587,-#_9732bd8cee779a41d372cf4e8c1260d6p@chr17:77090555..77090587, -
4.72e-108FFCP PHASE2:Hg19::chr17:77090555..77090587,-#_9732bd8cee779a41d372cf4e8c1260d6p@chr17:77090555..77090587, -
8.45e-108FFCP PHASE1:Hg19::chr2:8595510..8595529,-#_71f9ac2ed189ffa2c473cd980b612378p@chr2:8595510..8595529, -
8.45e-108FFCP PHASE2:Hg19::chr2:8595510..8595529,-#_71f9ac2ed189ffa2c473cd980b612378p@chr2:8595510..8595529, -
1.02e-107FFCP PHASE1:Hg19::chr20:1975298..1975316,-#_e4d0d5b0a791c75c36e0ff36492eb303p2@PDYN
1.02e-107FFCP PHASE2:Hg19::chr20:1975298..1975316,-#_e4d0d5b0a791c75c36e0ff36492eb303p2@PDYN
1.13e-107FFCP PHASE2:Hg19::chr4:46392290..46392324,-#_c605b28a8a3f547f3682c38d06dfb4d0p13@GABRA2
1.13e-107FFCP PHASE1:Hg19::chr4:46392290..46392324,-#_c605b28a8a3f547f3682c38d06dfb4d0p13@GABRA2
1.19e-107FFCP PHASE1:Hg19::chr16:56390359..56390376,+#_62fc32218f61147aff3748c65514db73p@chr16:56390359..56390376, +
1.19e-107FFCP PHASE2:Hg19::chr16:56390359..56390376,+#_62fc32218f61147aff3748c65514db73p@chr16:56390359..56390376, +
1.24e-107FFCP PHASE1:Hg19::chr1:156119798..156119834,+#_8960ed15271313cff6534a007e6ee2ebp5@SEMA4A
1.24e-107FFCP PHASE2:Hg19::chr1:156119798..156119834,+#_8960ed15271313cff6534a007e6ee2ebp5@SEMA4A
1.31e-107FFCP PHASE2:Hg19::chr7:54609764..54609789,+#_3346613bbd8927dc5296f9c29f718779p8@VSTM2A
1.31e-107FFCP PHASE1:Hg19::chr7:54609764..54609789,+#_3346613bbd8927dc5296f9c29f718779p8@VSTM2A
1.91e-107FFCP PHASE2:Hg19::chr12:14134689..14134704,-#_5ecef83b04cee1c07016494bd38584dep@chr12:14134689..14134704, -
1.91e-107FFCP PHASE1:Hg19::chr12:14134689..14134704,-#_5ecef83b04cee1c07016494bd38584dep@chr12:14134689..14134704, -
2.32e-107FFCP PHASE1:Hg19::chr12:14133820..14133830,-#_697dbd8e3bc58090211bf3f611961394p@chr12:14133820..14133830, -
2.32e-107FFCP PHASE2:Hg19::chr12:14133820..14133830,-#_697dbd8e3bc58090211bf3f611961394p@chr12:14133820..14133830, -
2.8e-107FFCP PHASE2:Hg19::chr12:57957885..57957898,+#_96eb1dc7e752556015b1aaf162d16e81p@chr12:57957885..57957898, +
2.8e-107FFCP PHASE1:Hg19::chr12:57957885..57957898,+#_96eb1dc7e752556015b1aaf162d16e81p@chr12:57957885..57957898, +
3.92e-107FFCP PHASE2:Hg19::chr6:101847075..101847092,+#_90f6cd4f4a57b6790940e9c0d6270ba7p5@GRIK2
3.92e-107FFCP PHASE1:Hg19::chr6:101847075..101847092,+#_90f6cd4f4a57b6790940e9c0d6270ba7p5@GRIK2
4.4e-107FFCP PHASE1:Hg19::chr1:2005182..2005194,+#_aac510311ee1f24f7dc95fd6414433acp8@PRKCZ
4.4e-107FFCP PHASE2:Hg19::chr1:2005182..2005194,+#_aac510311ee1f24f7dc95fd6414433acp8@PRKCZ
8.12e-107FFCP PHASE2:Hg19::chr20:34743645..34743687,-#_be291e4a3c310afd771a7f192df4f76ap1@ENST00000441208, p1@uc002xfa.1
8.12e-107FFCP PHASE1:Hg19::chr20:34743645..34743687,-#_be291e4a3c310afd771a7f192df4f76ap1@ENST00000441208, p1@uc002xfa.1
8.19e-107FFCP PHASE1:Hg19::chr2:196990526..196990535,-#_3eb3f42bc9220e83cc4de4cefb8929fap@chr2:196990526..196990535, -
8.19e-107FFCP PHASE2:Hg19::chr2:196990526..196990535,-#_3eb3f42bc9220e83cc4de4cefb8929fap@chr2:196990526..196990535, -
8.66e-107FFCP PHASE2:Hg19::chrX:13835312..13835321,-#_fb33dc6dec46e70ad0ac91479688b8dfp9@GPM6B
8.66e-107FFCP PHASE1:Hg19::chrX:13835312..13835321,-#_fb33dc6dec46e70ad0ac91479688b8dfp9@GPM6B
1.08e-106FFCP PHASE2:Hg19::chr16:24267634..24267671,+#_8ff4f39aeee97f11605e3a1af860ff19p2@CACNG3
1.08e-106FFCP PHASE1:Hg19::chr16:24267634..24267671,+#_8ff4f39aeee97f11605e3a1af860ff19p2@CACNG3