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UBERON:0003544

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Name:brain white matter
Namespace:FANTOM
Definition:"the regions of the brain that are largely or entirely composed of myelinated nerve cell axons and contain few or no neural cell bodies or dendrites." [MP:0008026]
Xrefs:
links:

MA:0000820

ncithesaurus:Brain_White_Matter
Synonyms: "brain white matter of neuraxis" EXACT [OBOL:automatic]
"brain white substance" EXACT [OBOL:automatic]
"white matter of brain" EXACT [OBOL:automatic]
"white matter of neuraxis of brain" EXACT [OBOL:automatic]
"white substance of brain" EXACT [OBOL:automatic]

Ontology association
Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.

link to ontology dataset
data


Parents

is_a:UBERON:0002316(white matter)
part_of:UBERON:0000955(brain)



Children

is a:UBERON:0011299 (white matter of telencephalon)

Ontology Tree: Loaded from BioPortal


FF samples
It includes FANTOM5 samples that overlay the Uberon ontology


Human (Homo sapiens)


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0003544 (brain white matter), sorted by p-values
Analyst: Hideya Kawaji

link to source dataset
human : data
mouse : data


P-valueFFCPShort description
5.42e-195FFCP PHASE1:Hg19::chr17:73689469..73689476,-#_0a5b6cdb743afcef51a413c1f57fe79e-, p@chr17:73689469..73689476
5.42e-195FFCP PHASE2:Hg19::chr14:36462819..36462832,+#_0a5b6cdb743afcef51a413c1f57fe79ep@chr14:36462819..36462832, +
5.42e-195FFCP PHASE1:Hg19::chr14:36462819..36462832,+#_0a5b6cdb743afcef51a413c1f57fe79ep@chr14:36462819..36462832, +
5.42e-195FFCP PHASE2:Hg19::chr17:73689469..73689476,-#_0a5b6cdb743afcef51a413c1f57fe79ep@chr17:73689469..73689476, -
5.42e-195FFCP PHASE1:Hg19::chr5:60927228..60927236,-#_0a5b6cdb743afcef51a413c1f57fe79ep3@BC032909, p3@BC032910
5.42e-195FFCP PHASE2:Hg19::chr15:93827399..93827403,+#_0a5b6cdb743afcef51a413c1f57fe79ep@chr15:93827399..93827403, +
5.42e-195FFCP PHASE2:Hg19::chr5:60927228..60927236,-#_0a5b6cdb743afcef51a413c1f57fe79ep3@BC032909, p3@BC032910
5.42e-195FFCP PHASE1:Hg19::chr15:93827399..93827403,+#_0a5b6cdb743afcef51a413c1f57fe79ep@chr15:93827399..93827403, +
9.37e-99FFCP PHASE1:Hg19::chr2:232548018..232548022,-#_91981c4064ac343b4c3c48529d939573p@chr2:232548018..232548022, -
9.37e-99FFCP PHASE1:Hg19::chr14:33926303..33926307,-#_91981c4064ac343b4c3c48529d939573p@chr14:33926303..33926307, -
9.37e-99FFCP PHASE1:Hg19::chr12:78359873..78359882,+#_91981c4064ac343b4c3c48529d939573p41@NAV3
9.37e-99FFCP PHASE2:Hg19::chr12:78359873..78359882,+#_91981c4064ac343b4c3c48529d939573p41@NAV3
9.37e-99FFCP PHASE2:Hg19::chr11:110248322..110248329,-#_91981c4064ac343b4c3c48529d939573p@chr11:110248322..110248329, -
9.37e-99FFCP PHASE1:Hg19::chr11:110248322..110248329,-#_91981c4064ac343b4c3c48529d939573p@chr11:110248322..110248329, -
9.37e-99FFCP PHASE2:Hg19::chr14:33926303..33926307,-#_91981c4064ac343b4c3c48529d939573p@chr14:33926303..33926307, -
9.37e-99FFCP PHASE2:Hg19::chr2:232548018..232548022,-#_91981c4064ac343b4c3c48529d939573p@chr2:232548018..232548022, -
2.55e-98FFCP PHASE2:Hg19::chr19:35788742..35788752,+#_209ef714d574011f85818fcc440e4c8bp@chr19:35788742..35788752, +
2.55e-98FFCP PHASE2:Hg19::chr3:15374659..15374696,-#_209ef714d574011f85818fcc440e4c8bp10@SH3BP5
2.55e-98FFCP PHASE1:Hg19::chr3:15374659..15374696,-#_209ef714d574011f85818fcc440e4c8bp10@SH3BP5
2.55e-98FFCP PHASE1:Hg19::chr19:35788742..35788752,+#_209ef714d574011f85818fcc440e4c8bp@chr19:35788742..35788752, +
1.23e-66FFCP PHASE2:Hg19::chr8:42037488..42037504,+#_4be6fae4fe7b6eb43fd91f9d090e4581p@chr8:42037488..42037504, +
1.23e-66FFCP PHASE2:Hg19::chr17:72823919..72823924,-#_4be6fae4fe7b6eb43fd91f9d090e4581-, p@chr17:72823919..72823924
1.23e-66FFCP PHASE2:Hg19::chr7:124391226..124391235,-#_4be6fae4fe7b6eb43fd91f9d090e4581p@chr7:124391226..124391235, -
1.23e-66FFCP PHASE1:Hg19::chr7:124391226..124391235,-#_4be6fae4fe7b6eb43fd91f9d090e4581p@chr7:124391226..124391235, -
1.23e-66FFCP PHASE1:Hg19::chr17:72823919..72823924,-#_4be6fae4fe7b6eb43fd91f9d090e4581p@chr17:72823919..72823924, -
1.23e-66FFCP PHASE2:Hg19::chr10:73479518..73479527,-#_4be6fae4fe7b6eb43fd91f9d090e4581p5@C10orf105
1.23e-66FFCP PHASE1:Hg19::chr12:78359680..78359686,+#_4be6fae4fe7b6eb43fd91f9d090e4581p32@NAV3
1.23e-66FFCP PHASE1:Hg19::chr10:73479518..73479527,-#_4be6fae4fe7b6eb43fd91f9d090e4581p5@C10orf105
1.23e-66FFCP PHASE2:Hg19::chr12:78359680..78359686,+#_4be6fae4fe7b6eb43fd91f9d090e4581p32@NAV3
1.23e-66FFCP PHASE1:Hg19::chr8:42037488..42037504,+#_4be6fae4fe7b6eb43fd91f9d090e4581p@chr8:42037488..42037504, +
2.39e-66FFCP PHASE2:Hg19::chr10:25012236..25012245,-#_ec6a88cba0e479d48f2b7e72e42b159ap24@ARHGAP21
2.39e-66FFCP PHASE2:Hg19::chr6:163681762..163681767,+#_ec6a88cba0e479d48f2b7e72e42b159ap@chr6:163681762..163681767, +
2.39e-66FFCP PHASE2:Hg19::chr10:61043452..61043467,-#_ec6a88cba0e479d48f2b7e72e42b159ap16@FAM13C
2.39e-66FFCP PHASE1:Hg19::chr6:163681762..163681767,+#_ec6a88cba0e479d48f2b7e72e42b159ap@chr6:163681762..163681767, +
2.39e-66FFCP PHASE1:Hg19::chr10:61043452..61043467,-#_ec6a88cba0e479d48f2b7e72e42b159ap16@FAM13C
2.39e-66FFCP PHASE1:Hg19::chr10:25012236..25012245,-#_ec6a88cba0e479d48f2b7e72e42b159ap24@ARHGAP21
4.66e-66FFCP PHASE1:Hg19::chr5:35089832..35089839,-#_4691cb386460597e62f98b799d48ef89p26@PRLR
4.66e-66FFCP PHASE2:Hg19::chr8:101522298..101522305,-#_4691cb386460597e62f98b799d48ef89p@chr8:101522298..101522305, -
4.66e-66FFCP PHASE2:Hg19::chr17:40120071..40120085,+#_4691cb386460597e62f98b799d48ef89p15@CNP
4.66e-66FFCP PHASE2:Hg19::chr7:129015806..129015815,+#_4691cb386460597e62f98b799d48ef89p@chr7:129015806..129015815, +
4.66e-66FFCP PHASE1:Hg19::chr14:91199850..91199861,-#_4691cb386460597e62f98b799d48ef89p@chr14:91199850..91199861, -
4.66e-66FFCP PHASE2:Hg19::chr14:91199850..91199861,-#_4691cb386460597e62f98b799d48ef89p@chr14:91199850..91199861, -
4.66e-66FFCP PHASE1:Hg19::chr13:99135698..99135706,+#_4691cb386460597e62f98b799d48ef89p@chr13:99135698..99135706, +
4.66e-66FFCP PHASE2:Hg19::chr13:99135698..99135706,+#_4691cb386460597e62f98b799d48ef89p@chr13:99135698..99135706, +
4.66e-66FFCP PHASE2:Hg19::chr7:129012882..129012891,-#_4691cb386460597e62f98b799d48ef89p@chr7:129012882..129012891, -
4.66e-66FFCP PHASE2:Hg19::chr4:645709..645712,+#_4691cb386460597e62f98b799d48ef89p15@PDE6B
4.66e-66FFCP PHASE1:Hg19::chr4:174293011..174293022,-#_4691cb386460597e62f98b799d48ef89p@chr4:174293011..174293022, -
4.66e-66FFCP PHASE2:Hg19::chr5:35089799..35089804,-#_4691cb386460597e62f98b799d48ef89p20@PRLR
4.66e-66FFCP PHASE1:Hg19::chr4:645709..645712,+#_4691cb386460597e62f98b799d48ef89p15@PDE6B
4.66e-66FFCP PHASE2:Hg19::chr5:35089832..35089839,-#_4691cb386460597e62f98b799d48ef89p26@PRLR
4.66e-66FFCP PHASE1:Hg19::chr8:101522298..101522305,-#_4691cb386460597e62f98b799d48ef89p@chr8:101522298..101522305, -
4.66e-66FFCP PHASE1:Hg19::chr7:129015806..129015815,+#_4691cb386460597e62f98b799d48ef89p@chr7:129015806..129015815, +
4.66e-66FFCP PHASE1:Hg19::chr5:35089799..35089804,-#_4691cb386460597e62f98b799d48ef89p20@PRLR
4.66e-66FFCP PHASE2:Hg19::chr4:174293011..174293022,-#_4691cb386460597e62f98b799d48ef89-, p@chr4:174293011..174293022
4.66e-66FFCP PHASE1:Hg19::chr17:40120071..40120085,+#_4691cb386460597e62f98b799d48ef89p15@CNP
4.66e-66FFCP PHASE1:Hg19::chr7:129012882..129012891,-#_4691cb386460597e62f98b799d48ef89p@chr7:129012882..129012891, -
1.46e-50FFCP PHASE1:Hg19::chr6:170571770..170571782,-#_7209f651b0f218e4363352d2a2e6f085p2@LOC154449
1.46e-50FFCP PHASE2:Hg19::chr6:170571770..170571782,-#_7209f651b0f218e4363352d2a2e6f085p2@LOC154449
2.42e-50FFCP PHASE2:Hg19::chr19:15751984..15751994,+#_916004a1d4cd90061a70e0c9c2eff8f5p6@CYP4F3
2.42e-50FFCP PHASE2:Hg19::chr12:106697974..106697990,-#_916004a1d4cd90061a70e0c9c2eff8f5p31@CKAP4
2.42e-50FFCP PHASE1:Hg19::chr10:7454514..7454525,-#_916004a1d4cd90061a70e0c9c2eff8f5p@chr10:7454514..7454525, -
2.42e-50FFCP PHASE1:Hg19::chr19:15751984..15751994,+#_916004a1d4cd90061a70e0c9c2eff8f5p6@CYP4F3
2.42e-50FFCP PHASE2:Hg19::chr11:133996343..133996351,+#_916004a1d4cd90061a70e0c9c2eff8f5p8@JAM3
2.42e-50FFCP PHASE1:Hg19::chr12:106697974..106697990,-#_916004a1d4cd90061a70e0c9c2eff8f5p31@CKAP4
2.42e-50FFCP PHASE2:Hg19::chrX:103031196..103031205,-#_916004a1d4cd90061a70e0c9c2eff8f5p@chrX:103031196..103031205, -
2.42e-50FFCP PHASE2:Hg19::chr7:30202318..30202329,+#_916004a1d4cd90061a70e0c9c2eff8f5p@chr7:30202318..30202329, +
2.42e-50FFCP PHASE2:Hg19::chr4:74005833..74005844,-#_916004a1d4cd90061a70e0c9c2eff8f5p@chr4:74005833..74005844, -
2.42e-50FFCP PHASE1:Hg19::chrX:103031196..103031205,-#_916004a1d4cd90061a70e0c9c2eff8f5p@chrX:103031196..103031205, -
2.42e-50FFCP PHASE1:Hg19::chr11:133996343..133996351,+#_916004a1d4cd90061a70e0c9c2eff8f5p8@JAM3
2.42e-50FFCP PHASE1:Hg19::chr7:30202318..30202329,+#_916004a1d4cd90061a70e0c9c2eff8f5p@chr7:30202318..30202329, +
2.42e-50FFCP PHASE1:Hg19::chr4:74005833..74005844,-#_916004a1d4cd90061a70e0c9c2eff8f5p@chr4:74005833..74005844, -
2.42e-50FFCP PHASE2:Hg19::chr10:7454514..7454525,-#_916004a1d4cd90061a70e0c9c2eff8f5p@chr10:7454514..7454525, -
3.99e-50FFCP PHASE2:Hg19::chr11:45922629..45922637,+#_c5f8b92028dc34f9ee3876e14c21b51ap@chr11:45922629..45922637, +
3.99e-50FFCP PHASE1:Hg19::chr9:20927844..20927855,+#_c5f8b92028dc34f9ee3876e14c21b51ap@chr9:20927844..20927855, +
3.99e-50FFCP PHASE2:Hg19::chr6:164364681..164364684,-#_c5f8b92028dc34f9ee3876e14c21b51ap@chr6:164364681..164364684, -
3.99e-50FFCP PHASE1:Hg19::chr6:164364681..164364684,-#_c5f8b92028dc34f9ee3876e14c21b51ap@chr6:164364681..164364684, -
3.99e-50FFCP PHASE1:Hg19::chr11:45922629..45922637,+#_c5f8b92028dc34f9ee3876e14c21b51ap@chr11:45922629..45922637, +
3.99e-50FFCP PHASE1:Hg19::chr3:160203278..160203289,-#_c5f8b92028dc34f9ee3876e14c21b51ap8@TRIM59
3.99e-50FFCP PHASE2:Hg19::chr9:20927844..20927855,+#_c5f8b92028dc34f9ee3876e14c21b51ap@chr9:20927844..20927855, +
3.99e-50FFCP PHASE2:Hg19::chr3:160203278..160203289,-#_c5f8b92028dc34f9ee3876e14c21b51ap8@TRIM59
3.99e-50FFCP PHASE1:Hg19::chr17:36726052..36726061,-#_c5f8b92028dc34f9ee3876e14c21b51ap@chr17:36726052..36726061, -
3.99e-50FFCP PHASE2:Hg19::chr17:36726052..36726061,-#_c5f8b92028dc34f9ee3876e14c21b51ap@chr17:36726052..36726061, -
6.58e-50FFCP PHASE2:Hg19::chr9:112191163..112191174,-#_bc3477b7a15485fd1487cb74785eb671p10@PTPN3
6.58e-50FFCP PHASE2:Hg19::chr2:219610931..219610941,+#_bc3477b7a15485fd1487cb74785eb671p13@TTLL4
6.58e-50FFCP PHASE1:Hg19::chr4:7412700..7412704,+#_bc3477b7a15485fd1487cb74785eb671p@chr4:7412700..7412704, +
6.58e-50FFCP PHASE1:Hg19::chrX:28605300..28605301,+#_bc3477b7a15485fd1487cb74785eb671p8@IL1RAPL1
6.58e-50FFCP PHASE2:Hg19::chr6:133119649..133119655,-#_bc3477b7a15485fd1487cb74785eb671p6@C6orf192
6.58e-50FFCP PHASE2:Hg19::chr12:99288459..99288464,-#_bc3477b7a15485fd1487cb74785eb671p38@ANKS1B
6.58e-50FFCP PHASE1:Hg19::chr3:190578500..190578506,-#_bc3477b7a15485fd1487cb74785eb671p@chr3:190578500..190578506, -
6.58e-50FFCP PHASE2:Hg19::chrX:28605300..28605301,+#_bc3477b7a15485fd1487cb74785eb671p8@IL1RAPL1
6.58e-50FFCP PHASE2:Hg19::chr11:67190503..67190512,+#_bc3477b7a15485fd1487cb74785eb671p8@CARNS1
6.58e-50FFCP PHASE1:Hg19::chr9:112191163..112191174,-#_bc3477b7a15485fd1487cb74785eb671p10@PTPN3
6.58e-50FFCP PHASE1:Hg19::chr3:10706167..10706179,-#_bc3477b7a15485fd1487cb74785eb671p@chr3:10706167..10706179, -
6.58e-50FFCP PHASE2:Hg19::chr11:117585539..117585541,-#_bc3477b7a15485fd1487cb74785eb671p@chr11:117585539..117585541, -
6.58e-50FFCP PHASE1:Hg19::chr11:117585539..117585541,-#_bc3477b7a15485fd1487cb74785eb671p@chr11:117585539..117585541, -
6.58e-50FFCP PHASE1:Hg19::chr11:67190503..67190512,+#_bc3477b7a15485fd1487cb74785eb671p8@CARNS1
6.58e-50FFCP PHASE1:Hg19::chr6:133119649..133119655,-#_bc3477b7a15485fd1487cb74785eb671p6@C6orf192
6.58e-50FFCP PHASE2:Hg19::chr3:190578500..190578506,-#_bc3477b7a15485fd1487cb74785eb671p@chr3:190578500..190578506, -
6.58e-50FFCP PHASE1:Hg19::chr12:99288459..99288464,-#_bc3477b7a15485fd1487cb74785eb671p38@ANKS1B
6.58e-50FFCP PHASE2:Hg19::chr4:7412700..7412704,+#_bc3477b7a15485fd1487cb74785eb671p@chr4:7412700..7412704, +