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UBERON:0003894

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Name:liver primordium
Namespace:FANTOM
Definition:"A small endodermal thickening in the foregut adjacent to the transverse septum. Invaginates forming the hepatic diverticulum." [ISBN:3211492755]
Xrefs:
links:

AAO:0011058
EFO:0003428
EHDAA2:0000744
EHDAA:973
EMAPA:16847
ncithesaurus:Hepatic_Cord
ncithesaurus:Primordium_of_the_Liver
TAO:0000124
XAO:0003266

ZFA:0000124
Synonyms: "embryological hepatic plate" EXACT [UBERON:cjm]
"hepatic plate" RELATED [EHDAA2:0000744]
"liver bud" RELATED INCONSISTENT [XAO:0003266, ZFA:0000124]
"primordium of the liver" EXACT [ncithesaurus:Primordium_of_the_Liver]
Comments:Todo - check hepatic plate; check syns
Subset: vertebrate_core

Ontology association
Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.

link to ontology dataset
data


Parents

is_a:UBERON:0005291(embryonic tissue),UBERON:0007497(developing epithelial placode),UBERON:0009497(epithelium of foregut-midgut junction)
develops_from:UBERON:0001041(foregut)
part_of:UBERON:0009550(endoderm of foregut-midgut junction)



Children

develops from:UBERON:0002107 (liver),UBERON:0008835 (hepatic diverticulum)

Ontology Tree: Loaded from BioPortal


FF samples
It includes FANTOM5 samples that overlay the Uberon ontology




Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0003894 (liver primordium), sorted by p-values
Analyst: Hideya Kawaji

link to source dataset
human : data
mouse : data


P-valueFFCPShort description
1.22e-72FFCP PHASE1:Mm9::chr5:90897694..90897705,+#_fa85f6b95f0dcc11c71f44ba1b080e97p@chr5:90897694..90897705, +
1.22e-72FFCP PHASE2:Mm9::chr5:90897694..90897705,+#_fa85f6b95f0dcc11c71f44ba1b080e97p@chr5:90897694..90897705, +
2.2e-72FFCP PHASE1:Mm9::chr19:25169885..25169900,+#_5a05e312168caa084d5a8781bf129c5ap@chr19:25169885..25169900, +
2.2e-72FFCP PHASE2:Mm9::chr19:25169885..25169900,+#_5a05e312168caa084d5a8781bf129c5ap@chr19:25169885..25169900, +
1.13e-71FFCP PHASE2:Hg19::chr12:100867777..100867788,+#_5b4200d20f81e9a6b11da0f28257d183p5@NR1H4
1.13e-71FFCP PHASE1:Hg19::chr12:100867777..100867788,+#_5b4200d20f81e9a6b11da0f28257d183p5@NR1H4
2.32e-71FFCP PHASE2:Hg19::chr8:144417558..144417572,-#_d967fc9b372694ebae9cb8f70ac49366p7@TOP1MT
2.32e-71FFCP PHASE1:Hg19::chr8:144417558..144417572,-#_d967fc9b372694ebae9cb8f70ac49366p7@TOP1MT
2.32e-71FFCP PHASE1:Hg19::chr2:21233797..21233804,-#_d967fc9b372694ebae9cb8f70ac49366p58@APOB
2.32e-71FFCP PHASE2:Hg19::chr2:21233797..21233804,-#_d967fc9b372694ebae9cb8f70ac49366p58@APOB
5.51e-71FFCP PHASE2:Mm9::chr7:121912281..121912295,+#_fdb8fca7a0ec85686d6a43b5fa8b7edcp6@Insc
5.51e-71FFCP PHASE1:Mm9::chr7:121912281..121912295,+#_fdb8fca7a0ec85686d6a43b5fa8b7edcp6@Insc
1.7e-70FFCP PHASE1:Mm9::chr8:131012371..131012382,-#_de984d32426dde767a53bbdab51c25ddp2@uc009nzu.1
1.7e-70FFCP PHASE2:Mm9::chr8:131012371..131012382,-#_de984d32426dde767a53bbdab51c25ddp2@uc009nzu.1
1.28e-68FFCP PHASE1:Mm9::chr13:94407586..94407604,-#_ae896be15ec7031023164dcbb1a15061p5@Bhmt
1.28e-68FFCP PHASE2:Mm9::chr13:94407586..94407604,-#_ae896be15ec7031023164dcbb1a15061p5@Bhmt
2.27e-68FFCP PHASE2:Hg19::chr2:201171064..201171071,+#_9417144c196a2b23c0cc1c87b3a68235p19@SPATS2L
2.27e-68FFCP PHASE1:Hg19::chr2:201171064..201171071,+#_9417144c196a2b23c0cc1c87b3a68235p19@SPATS2L
2.72e-68FFCP PHASE1:Mm9::chr1:162917234..162917248,+#_ba424c647d68590dedc2947533277ac6p@chr1:162917234..162917248, +
2.72e-68FFCP PHASE2:Mm9::chr1:162917234..162917248,+#_ba424c647d68590dedc2947533277ac6p@chr1:162917234..162917248, +
3.5e-68FFCP PHASE1:Mm9::chr9:110892216..110892232,-#_ae660e028d8169034964c0684f7231ddp1@Rtp3
3.5e-68FFCP PHASE2:Mm9::chr9:110892216..110892232,-#_ae660e028d8169034964c0684f7231ddp1@Rtp3
2.47e-67FFCP PHASE1:Mm9::chr7:112744083..112744109,-#_a59716f9950309321b78441b9a22806fp@chr7:112744083..112744109, -
2.47e-67FFCP PHASE2:Mm9::chr9:110892239..110892252,-#_a59716f9950309321b78441b9a22806fp2@Rtp3
2.47e-67FFCP PHASE1:Mm9::chr9:110892239..110892252,-#_a59716f9950309321b78441b9a22806fp2@Rtp3
2.47e-67FFCP PHASE2:Mm9::chr7:112744083..112744109,-#_a59716f9950309321b78441b9a22806fp@chr7:112744083..112744109, -
6.55e-67FFCP PHASE1:Mm9::chr13:23928766..23928779,+#_c099940f77e944dd3e3b80e0927ac927p@chr13:23928766..23928779, +
6.55e-67FFCP PHASE2:Mm9::chr13:23928766..23928779,+#_c099940f77e944dd3e3b80e0927ac927p@chr13:23928766..23928779, +
7.85e-67FFCP PHASE2:Mm9::chr7:28237436..28237488,+#_694640ea0f6deb669a665447acc6c77bp3@Blvrb
7.85e-67FFCP PHASE1:Mm9::chr7:28237436..28237488,+#_694640ea0f6deb669a665447acc6c77bp3@Blvrb
1.58e-66FFCP PHASE2:Mm9::chr12:105004018..105004046,-#_6ca345073df9eeedc4674de83599445a-, p@chr12:105004018..105004046
1.58e-66FFCP PHASE2:Mm9::chr6:128436166..128436185,-#_6ca345073df9eeedc4674de83599445ap@chr6:128436166..128436185, -
1.58e-66FFCP PHASE1:Mm9::chr2:10041210..10041222,-#_6ca345073df9eeedc4674de83599445ap@chr2:10041210..10041222, -
1.58e-66FFCP PHASE1:Mm9::chr16:22894900..22894910,+#_6ca345073df9eeedc4674de83599445ap@chr16:22894900..22894910, +
1.58e-66FFCP PHASE1:Mm9::chr16:22898981..22898988,-#_6ca345073df9eeedc4674de83599445ap@chr16:22898981..22898988, -
1.58e-66FFCP PHASE2:Mm9::chr16:22894900..22894910,+#_6ca345073df9eeedc4674de83599445ap@chr16:22894900..22894910, +
1.58e-66FFCP PHASE2:Mm9::chr16:22898981..22898988,-#_6ca345073df9eeedc4674de83599445ap@chr16:22898981..22898988, -
1.58e-66FFCP PHASE1:Mm9::chr12:105004018..105004046,-#_6ca345073df9eeedc4674de83599445ap@chr12:105004018..105004046, -
1.58e-66FFCP PHASE2:Mm9::chr2:10041210..10041222,-#_6ca345073df9eeedc4674de83599445ap@chr2:10041210..10041222, -
1.58e-66FFCP PHASE1:Mm9::chr6:128436166..128436185,-#_6ca345073df9eeedc4674de83599445ap@chr6:128436166..128436185, -
1.39e-65FFCP PHASE1:Hg19::chrX:153769426..153769436,+#_01dffb21dd9ee303c19039f28681115fp18@IKBKG
1.39e-65FFCP PHASE2:Hg19::chrX:153769426..153769436,+#_01dffb21dd9ee303c19039f28681115fp18@IKBKG
2.18e-65FFCP PHASE2:Hg19::chr10:7745167..7745178,+#_796072a4d73929fe838318969d3035e9p3@ITIH2
2.18e-65FFCP PHASE1:Hg19::chr10:7745167..7745178,+#_796072a4d73929fe838318969d3035e9p3@ITIH2
3.98e-65FFCP PHASE1:Hg19::chr2:97216132..97216143,+#_d60393994ff67c632c88b9ee44832792p@chr2:97216132..97216143, +
3.98e-65FFCP PHASE2:Hg19::chr2:97216132..97216143,+#_d60393994ff67c632c88b9ee44832792p@chr2:97216132..97216143, +
1.17e-64FFCP PHASE2:Mm9::chr1:173155793..173155841,+#_d3c00c58944a63f2870f8e005a4f7ccep@chr1:173155793..173155841, +
1.17e-64FFCP PHASE1:Mm9::chr1:173155793..173155841,+#_d3c00c58944a63f2870f8e005a4f7ccep@chr1:173155793..173155841, +
1.34e-64FFCP PHASE2:Mm9::chr17:12588483..12588503,+#_a8ee5b893927d337c57263b3bcf6eb3ap@chr17:12588483..12588503, +
1.34e-64FFCP PHASE1:Mm9::chr17:12588483..12588503,+#_a8ee5b893927d337c57263b3bcf6eb3ap@chr17:12588483..12588503, +
1.38e-64FFCP PHASE1:Mm9::chr17:12584645..12584657,+#_09e1c8ef92cd5b829c27791243e5ccd6p@chr17:12584645..12584657, +
1.38e-64FFCP PHASE2:Mm9::chr17:12584645..12584657,+#_09e1c8ef92cd5b829c27791243e5ccd6p@chr17:12584645..12584657, +
1.62e-64FFCP PHASE1:Mm9::chr1:166179426..166179437,+#_8a65f97733e080ace4020fff2e4ad61ep@chr1:166179426..166179437, +
1.62e-64FFCP PHASE2:Mm9::chr1:166179426..166179437,+#_8a65f97733e080ace4020fff2e4ad61ep@chr1:166179426..166179437, +
1.68e-64FFCP PHASE2:Mm9::chr8:34917332..34917357,-#_e1c34b365eb25fd9250dac77227169efp@chr8:34917332..34917357, -
1.68e-64FFCP PHASE1:Mm9::chr8:34917332..34917357,-#_e1c34b365eb25fd9250dac77227169efp@chr8:34917332..34917357, -
4.38e-64FFCP PHASE2:Mm9::chr19:38191263..38191291,-#_d1110bb66928b85480550e5142f3a53dp@chr19:38191263..38191291, -
4.38e-64FFCP PHASE1:Mm9::chr19:38191263..38191291,-#_d1110bb66928b85480550e5142f3a53dp@chr19:38191263..38191291, -
9.3e-64FFCP PHASE1:Mm9::chr7:121912266..121912277,+#_5d9ee83b9ea5337099f374b7b04a5708p8@Insc
9.3e-64FFCP PHASE2:Mm9::chr7:121912266..121912277,+#_5d9ee83b9ea5337099f374b7b04a5708p8@Insc
1.1e-63FFCP PHASE1:Mm9::chr5:90893974..90893978,+#_c293b6476db5dbf0627b7810bf4e291fp@chr5:90893974..90893978, +
1.1e-63FFCP PHASE2:Mm9::chr5:90893974..90893978,+#_c293b6476db5dbf0627b7810bf4e291fp@chr5:90893974..90893978, +
1.7e-63FFCP PHASE1:Mm9::chr8:131012475..131012492,-#_06d126712f8fa5bb001e217ee875e176p1@uc009nzu.1
1.7e-63FFCP PHASE2:Mm9::chr8:131012475..131012492,-#_06d126712f8fa5bb001e217ee875e176p1@uc009nzu.1
1.72e-63FFCP PHASE2:Hg19::chr2:21228233..21228242,-#_0823670f4ef55cfb3f5ba51fe0be93a7p56@APOB
1.72e-63FFCP PHASE2:Hg19::chr2:21239379..21239390,-#_0823670f4ef55cfb3f5ba51fe0be93a7p@chr2:21239379..21239390, -
1.72e-63FFCP PHASE2:Hg19::chr2:21258509..21258518,-#_0823670f4ef55cfb3f5ba51fe0be93a7p@chr2:21258509..21258518, -
1.72e-63FFCP PHASE1:Hg19::chr2:21228233..21228242,-#_0823670f4ef55cfb3f5ba51fe0be93a7p56@APOB
1.72e-63FFCP PHASE1:Hg19::chr2:21239379..21239390,-#_0823670f4ef55cfb3f5ba51fe0be93a7p@chr2:21239379..21239390, -
1.72e-63FFCP PHASE1:Hg19::chr2:21258509..21258518,-#_0823670f4ef55cfb3f5ba51fe0be93a7p@chr2:21258509..21258518, -
1.72e-63FFCP PHASE2:Hg19::chr20:10349456..10349475,-#_0823670f4ef55cfb3f5ba51fe0be93a7p1@ENST00000421143
1.72e-63FFCP PHASE2:Hg19::chr20:22566089..22566097,-#_0823670f4ef55cfb3f5ba51fe0be93a7p6@FOXA2
1.72e-63FFCP PHASE2:Hg19::chr10:82049381..82049384,-#_0823670f4ef55cfb3f5ba51fe0be93a7p9@MAT1A
1.72e-63FFCP PHASE1:Hg19::chr10:82049381..82049384,-#_0823670f4ef55cfb3f5ba51fe0be93a7p9@MAT1A
1.72e-63FFCP PHASE1:Hg19::chr20:10349456..10349475,-#_0823670f4ef55cfb3f5ba51fe0be93a7p1@ENST00000421143
1.72e-63FFCP PHASE1:Hg19::chr20:22566089..22566097,-#_0823670f4ef55cfb3f5ba51fe0be93a7p6@FOXA2
1.85e-63FFCP PHASE2:Mm9::chr8:46380208..46380217,-#_fbefce146653d12b0e199388857e8d17p3@Klkb1
1.85e-63FFCP PHASE1:Mm9::chr8:46380208..46380217,-#_fbefce146653d12b0e199388857e8d17p3@Klkb1
2.02e-63FFCP PHASE2:Hg19::chr1:230846000..230846009,-#_369344b0ea4b81c269d170b9647a9ea9p@chr1:230846000..230846009, -
2.02e-63FFCP PHASE1:Hg19::chr14:94844853..94844862,-#_369344b0ea4b81c269d170b9647a9ea9p35@SERPINA1
2.02e-63FFCP PHASE1:Hg19::chr1:230846000..230846009,-#_369344b0ea4b81c269d170b9647a9ea9p@chr1:230846000..230846009, -
2.02e-63FFCP PHASE1:Mm9::chr3:57191661..57191672,-#_369344b0ea4b81c269d170b9647a9ea9p@chr3:57191661..57191672, -
2.02e-63FFCP PHASE2:Mm9::chr3:57191661..57191672,-#_369344b0ea4b81c269d170b9647a9ea9p@chr3:57191661..57191672, -
2.02e-63FFCP PHASE2:Hg19::chr14:94844853..94844862,-#_369344b0ea4b81c269d170b9647a9ea9p35@SERPINA1
2.18e-63FFCP PHASE2:Mm9::chr17:12583153..12583171,+#_67b668ccf0ad465e6601f97f6c3a516ep@chr17:12583153..12583171, +
2.18e-63FFCP PHASE1:Mm9::chr17:12583153..12583171,+#_67b668ccf0ad465e6601f97f6c3a516e+, p@chr17:12583153..12583171
2.2e-63FFCP PHASE2:Mm9::chr3:82814412..82814431,+#_be281b8d690380df1c60c6ea7012c94cp@chr3:82814412..82814431, +
2.2e-63FFCP PHASE1:Mm9::chr3:82814412..82814431,+#_be281b8d690380df1c60c6ea7012c94cp@chr3:82814412..82814431, +
3.67e-63FFCP PHASE2:Mm9::chr5:93000570..93000589,+#_6e4cfd816b604bcc41519136d52ca031p3@Fam47e
3.67e-63FFCP PHASE1:Mm9::chr5:93000570..93000589,+#_6e4cfd816b604bcc41519136d52ca031p3@Fam47e
3.85e-63FFCP PHASE2:Hg19::chr1:177939154..177939204,-#_221a98ff3815db302647166d74c07f2cp4@SEC16B
3.85e-63FFCP PHASE1:Hg19::chr1:177939154..177939204,-#_221a98ff3815db302647166d74c07f2cp4@SEC16B
5.17e-63FFCP PHASE1:Mm9::chr15:77605636..77605639,+#_3fb365edc2ff3ccbfb00cb0f663203ccp@chr15:77605636..77605639, +
5.17e-63FFCP PHASE1:Mm9::chr16:22895330..22895339,-#_3fb365edc2ff3ccbfb00cb0f663203ccp@chr16:22895330..22895339, -
5.17e-63FFCP PHASE1:Mm9::chr16:23449901..23449906,-#_3fb365edc2ff3ccbfb00cb0f663203ccp@chr16:23449901..23449906, -
5.17e-63FFCP PHASE1:Mm9::chr8:92849825..92849837,-#_3fb365edc2ff3ccbfb00cb0f663203ccp@chr8:92849825..92849837, -
5.17e-63FFCP PHASE2:Mm9::chr16:22895330..22895339,-#_3fb365edc2ff3ccbfb00cb0f663203ccp@chr16:22895330..22895339, -
5.17e-63FFCP PHASE1:Mm9::chr3:82835513..82835525,+#_3fb365edc2ff3ccbfb00cb0f663203ccp@chr3:82835513..82835525, +
5.17e-63FFCP PHASE2:Mm9::chr15:77605636..77605639,+#_3fb365edc2ff3ccbfb00cb0f663203ccp@chr15:77605636..77605639, +
5.17e-63FFCP PHASE2:Mm9::chr8:92849825..92849837,-#_3fb365edc2ff3ccbfb00cb0f663203ccp@chr8:92849825..92849837, -