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UBERON:0003902

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Name:retinal neural layer
Namespace:FANTOM
Definition:"The layer of nerve cells in the retina[XAO]. The part of the retina that contains neurons and photoreceptor cells[GO]." [GO:0003407, XAO:0003216]
Xrefs:
links:

AAO:0011095
BTO:0000929
EHDAA2:0001253
EHDAA:4763
EMAPA:17171
EMAPA:18590
FMA:58628
MA:0000277
ncithesaurus:Neural_Retina
TAO:0000046
VHOG:0000535
XAO:0003216

ZFA:0000046
Synonyms: "neural layer of retina" EXACT [FMA:58628]
"neural retina" EXACT [XAO:0003216, ZFA:0000046]
"neural retinal epithelium" RELATED [MA:000027]
"neuroretina" EXACT [ZFA:0000046]
"stratum nervosum (retina)" EXACT [FMA:58628]
Comments:editor note - we follow ontologies such as FMA and ZFA in first dividing into pigmented and neural layers; the neural layers are further divided into 9 layers. Note that in MA this class is a leaf node.
Subset: vertebrate_core

Ontology association
Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.

link to ontology dataset
data


Parents

is_a:UBERON:0001781(layer of retina)
develops_from:UBERON:0005425(presumptive neural retina)



Children

develops from:UBERON:0000941 (cranial nerve II)

Ontology Tree: Loaded from BioPortal


FF samples
It includes FANTOM5 samples that overlay the Uberon ontology




Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0003902 (retinal neural layer), sorted by p-values
Analyst: Hideya Kawaji

link to source dataset
human : data
mouse : data


P-valueFFCPShort description
5.42e-195FFCP PHASE2:Hg19::chr12:57628762..57628773,-#_6092a75c3cc5832f2304dfb768edd4fbp@chr12:57628762..57628773, -
5.42e-195FFCP PHASE1:Hg19::chr12:57628762..57628773,-#_6092a75c3cc5832f2304dfb768edd4fbp@chr12:57628762..57628773, -
9.37e-99FFCP PHASE1:Hg19::chr18:25161980..25161984,-#_c497e6b096e6f3ed0d221e00db461687p@chr18:25161980..25161984, -
9.37e-99FFCP PHASE2:Hg19::chr5:149250331..149250335,-#_c497e6b096e6f3ed0d221e00db461687p@chr5:149250331..149250335, -
9.37e-99FFCP PHASE2:Hg19::chr2:188432107..188432111,+#_c497e6b096e6f3ed0d221e00db461687p@chr2:188432107..188432111, +
9.37e-99FFCP PHASE2:Hg19::chr7:15056365..15056368,-#_c497e6b096e6f3ed0d221e00db461687p@chr7:15056365..15056368, -
9.37e-99FFCP PHASE2:Hg19::chr5:151258901..151258902,+#_c497e6b096e6f3ed0d221e00db461687p@chr5:151258901..151258902, +
9.37e-99FFCP PHASE2:Hg19::chr18:74702556..74702558,-#_c497e6b096e6f3ed0d221e00db461687p@chr18:74702556..74702558, -
9.37e-99FFCP PHASE2:Hg19::chr14:105807545..105807554,+#_c497e6b096e6f3ed0d221e00db461687p@chr14:105807545..105807554, +
9.37e-99FFCP PHASE2:Hg19::chr2:60133192..60133194,-#_c497e6b096e6f3ed0d221e00db461687p@chr2:60133192..60133194, -
9.37e-99FFCP PHASE1:Hg19::chr7:15056365..15056368,-#_c497e6b096e6f3ed0d221e00db461687-, p@chr7:15056365..15056368
9.37e-99FFCP PHASE2:Hg19::chr18:25161980..25161984,-#_c497e6b096e6f3ed0d221e00db461687-, p@chr18:25161980..25161984
9.37e-99FFCP PHASE1:Hg19::chr5:151258901..151258902,+#_c497e6b096e6f3ed0d221e00db461687p@chr5:151258901..151258902, +
9.37e-99FFCP PHASE1:Hg19::chr2:188432107..188432111,+#_c497e6b096e6f3ed0d221e00db461687p@chr2:188432107..188432111, +
9.37e-99FFCP PHASE1:Hg19::chr2:60133192..60133194,-#_c497e6b096e6f3ed0d221e00db461687-, p@chr2:60133192..60133194
9.37e-99FFCP PHASE2:Hg19::chr1:62928606..62928608,+#_c497e6b096e6f3ed0d221e00db461687p@chr1:62928606..62928608, +
9.37e-99FFCP PHASE1:Hg19::chr18:74702556..74702558,-#_c497e6b096e6f3ed0d221e00db461687p@chr18:74702556..74702558, -
9.37e-99FFCP PHASE1:Hg19::chr14:105807545..105807554,+#_c497e6b096e6f3ed0d221e00db461687p@chr14:105807545..105807554, +
9.37e-99FFCP PHASE1:Hg19::chr5:149250331..149250335,-#_c497e6b096e6f3ed0d221e00db461687p@chr5:149250331..149250335, -
9.37e-99FFCP PHASE1:Hg19::chr4:127394496..127394500,-#_c497e6b096e6f3ed0d221e00db461687p@chr4:127394496..127394500, -
9.37e-99FFCP PHASE1:Hg19::chr1:62928606..62928608,+#_c497e6b096e6f3ed0d221e00db461687p@chr1:62928606..62928608, +
9.37e-99FFCP PHASE2:Hg19::chr4:127394496..127394500,-#_c497e6b096e6f3ed0d221e00db461687p@chr4:127394496..127394500, -
2.55e-98FFCP PHASE1:Hg19::chr11:79291300..79291301,+#_82099c57e0a429e7776f0c5a4c5e0b92p@chr11:79291300..79291301, +
2.55e-98FFCP PHASE1:Hg19::chr1:218214846..218214850,-#_82099c57e0a429e7776f0c5a4c5e0b92p@chr1:218214846..218214850, -
2.55e-98FFCP PHASE1:Hg19::chr11:2435409..2435443,-#_82099c57e0a429e7776f0c5a4c5e0b92p@chr11:2435409..2435443, -
2.55e-98FFCP PHASE2:Hg19::chr14:68527802..68527806,+#_82099c57e0a429e7776f0c5a4c5e0b92p@chr14:68527802..68527806, +
2.55e-98FFCP PHASE2:Hg19::chr15:69850503..69850506,+#_82099c57e0a429e7776f0c5a4c5e0b92p3@ENST00000558781
2.55e-98FFCP PHASE1:Hg19::chr8:126163123..126163134,+#_82099c57e0a429e7776f0c5a4c5e0b92p@chr8:126163123..126163134, +
2.55e-98FFCP PHASE1:Hg19::chr6:16317123..16317126,+#_82099c57e0a429e7776f0c5a4c5e0b92p@chr6:16317123..16317126, +
2.55e-98FFCP PHASE2:Hg19::chr11:57030314..57030346,+#_82099c57e0a429e7776f0c5a4c5e0b92p@chr11:57030314..57030346, +
2.55e-98FFCP PHASE1:Hg19::chr9:19514976..19514978,-#_82099c57e0a429e7776f0c5a4c5e0b92p@chr9:19514976..19514978, -
2.55e-98FFCP PHASE1:Hg19::chr15:36402459..36402465,-#_82099c57e0a429e7776f0c5a4c5e0b92p@chr15:36402459..36402465, -
2.55e-98FFCP PHASE1:Hg19::chr14:85119696..85119699,+#_82099c57e0a429e7776f0c5a4c5e0b92p@chr14:85119696..85119699, +
2.55e-98FFCP PHASE2:Hg19::chr2:171939999..171940009,-#_82099c57e0a429e7776f0c5a4c5e0b92p@chr2:171939999..171940009, -
2.55e-98FFCP PHASE2:Hg19::chr12:68567714..68567717,+#_82099c57e0a429e7776f0c5a4c5e0b92p@chr12:68567714..68567717, +
2.55e-98FFCP PHASE2:Hg19::chr18:61506836..61506840,+#_82099c57e0a429e7776f0c5a4c5e0b92p@chr18:61506836..61506840, +
2.55e-98FFCP PHASE2:Hg19::chr5:111570472..111570478,-#_82099c57e0a429e7776f0c5a4c5e0b92p@chr5:111570472..111570478, -
2.55e-98FFCP PHASE2:Hg19::chr16:66170755..66170759,-#_82099c57e0a429e7776f0c5a4c5e0b92p@chr16:66170755..66170759, -
2.55e-98FFCP PHASE1:Hg19::chr21:45724075..45724081,+#_82099c57e0a429e7776f0c5a4c5e0b92p@chr21:45724075..45724081, +
2.55e-98FFCP PHASE2:Hg19::chr1:203036812..203036840,+#_82099c57e0a429e7776f0c5a4c5e0b92p@chr1:203036812..203036840, +
2.55e-98FFCP PHASE1:Hg19::chr5:172318159..172318160,+#_82099c57e0a429e7776f0c5a4c5e0b92p@chr5:172318159..172318160, +
2.55e-98FFCP PHASE1:Hg19::chr1:86911063..86911068,+#_82099c57e0a429e7776f0c5a4c5e0b92p@chr1:86911063..86911068, +
2.55e-98FFCP PHASE2:Hg19::chr14:88034381..88034386,-#_82099c57e0a429e7776f0c5a4c5e0b92p@chr14:88034381..88034386, -
2.55e-98FFCP PHASE2:Hg19::chr7:77789390..77789399,-#_82099c57e0a429e7776f0c5a4c5e0b92p@chr7:77789390..77789399, -
2.55e-98FFCP PHASE2:Hg19::chr17:47107522..47107524,+#_82099c57e0a429e7776f0c5a4c5e0b92p@chr17:47107522..47107524, +
2.55e-98FFCP PHASE1:Hg19::chr5:33229308..33229311,-#_82099c57e0a429e7776f0c5a4c5e0b92p@chr5:33229308..33229311, -
2.55e-98FFCP PHASE2:Hg19::chr7:103086717..103086724,+#_82099c57e0a429e7776f0c5a4c5e0b92p@chr7:103086717..103086724, +
2.55e-98FFCP PHASE2:Hg19::chr19:48479835..48479841,-#_82099c57e0a429e7776f0c5a4c5e0b92p@chr19:48479835..48479841, -
2.55e-98FFCP PHASE1:Hg19::chr1:44991346..44991355,+#_82099c57e0a429e7776f0c5a4c5e0b92p@chr1:44991346..44991355, +
2.55e-98FFCP PHASE1:Hg19::chr19:20382476..20382481,-#_82099c57e0a429e7776f0c5a4c5e0b92p@chr19:20382476..20382481, -
2.55e-98FFCP PHASE2:Hg19::chr2:29645795..29645797,+#_82099c57e0a429e7776f0c5a4c5e0b92p@chr2:29645795..29645797, +
2.55e-98FFCP PHASE1:Hg19::chr1:1413227..1413230,+#_82099c57e0a429e7776f0c5a4c5e0b92p2@ATAD3B
2.55e-98FFCP PHASE2:Hg19::chr10:62149979..62149980,-#_82099c57e0a429e7776f0c5a4c5e0b92p59@ANK3
2.55e-98FFCP PHASE1:Hg19::chr14:68589926..68589929,+#_82099c57e0a429e7776f0c5a4c5e0b92p@chr14:68589926..68589929, +
2.55e-98FFCP PHASE1:Hg19::chr18:39859562..39859566,+#_82099c57e0a429e7776f0c5a4c5e0b92p@chr18:39859562..39859566, +
2.55e-98FFCP PHASE1:Hg19::chr11:20791058..20791067,+#_82099c57e0a429e7776f0c5a4c5e0b92p10@NELL1
2.55e-98FFCP PHASE1:Hg19::chr3:181328346..181328351,+#_82099c57e0a429e7776f0c5a4c5e0b92p22@SOX2-OT
2.55e-98FFCP PHASE1:Hg19::chr16:55740953..55740956,+#_82099c57e0a429e7776f0c5a4c5e0b92p@chr16:55740953..55740956, +
2.55e-98FFCP PHASE2:Hg19::chr1:1361494..1361497,+#_82099c57e0a429e7776f0c5a4c5e0b92p7@TMEM88B
2.55e-98FFCP PHASE1:Hg19::chr16:19586229..19586233,+#_82099c57e0a429e7776f0c5a4c5e0b92p12@C16orf62
2.55e-98FFCP PHASE2:Hg19::chr4:139501766..139501798,-#_82099c57e0a429e7776f0c5a4c5e0b92p@chr4:139501766..139501798, -
2.55e-98FFCP PHASE1:Hg19::chr2:30144229..30144240,-#_82099c57e0a429e7776f0c5a4c5e0b92p10@ALK
2.55e-98FFCP PHASE2:Hg19::chr8:22000519..22000525,-#_82099c57e0a429e7776f0c5a4c5e0b92p@chr8:22000519..22000525, -
2.55e-98FFCP PHASE2:Hg19::chr2:30144229..30144240,-#_82099c57e0a429e7776f0c5a4c5e0b92p10@ALK
2.55e-98FFCP PHASE2:Hg19::chr8:126163123..126163134,+#_82099c57e0a429e7776f0c5a4c5e0b92p@chr8:126163123..126163134, +
2.55e-98FFCP PHASE2:Hg19::chr5:24554148..24554153,+#_82099c57e0a429e7776f0c5a4c5e0b92p1@ENST00000510391
2.55e-98FFCP PHASE1:Hg19::chr17:47107522..47107524,+#_82099c57e0a429e7776f0c5a4c5e0b92p@chr17:47107522..47107524, +
2.55e-98FFCP PHASE1:Hg19::chr11:57030314..57030346,+#_82099c57e0a429e7776f0c5a4c5e0b92p@chr11:57030314..57030346, +
2.55e-98FFCP PHASE2:Hg19::chr12:59444098..59444102,+#_82099c57e0a429e7776f0c5a4c5e0b92p@chr12:59444098..59444102, +
2.55e-98FFCP PHASE2:Hg19::chr12:296753..296755,-#_82099c57e0a429e7776f0c5a4c5e0b92p@chr12:296753..296755, -
2.55e-98FFCP PHASE2:Hg19::chr21:45724075..45724081,+#_82099c57e0a429e7776f0c5a4c5e0b92p@chr21:45724075..45724081, +
2.55e-98FFCP PHASE1:Hg19::chr14:76447439..76447452,-#_82099c57e0a429e7776f0c5a4c5e0b92p18@TGFB3
2.55e-98FFCP PHASE2:Hg19::chr14:68589926..68589929,+#_82099c57e0a429e7776f0c5a4c5e0b92p@chr14:68589926..68589929, +
2.55e-98FFCP PHASE2:Hg19::chr18:39859562..39859566,+#_82099c57e0a429e7776f0c5a4c5e0b92+, p@chr18:39859562..39859566
2.55e-98FFCP PHASE1:Hg19::chr8:130597061..130597068,+#_82099c57e0a429e7776f0c5a4c5e0b92p@chr8:130597061..130597068, +
2.55e-98FFCP PHASE2:Hg19::chr3:181328346..181328351,+#_82099c57e0a429e7776f0c5a4c5e0b92p22@SOX2-OT
2.55e-98FFCP PHASE2:Hg19::chr2:165170873..165170919,-#_82099c57e0a429e7776f0c5a4c5e0b92p@chr2:165170873..165170919, -
2.55e-98FFCP PHASE2:Hg19::chr9:19514976..19514978,-#_82099c57e0a429e7776f0c5a4c5e0b92p@chr9:19514976..19514978, -
2.55e-98FFCP PHASE1:Hg19::chr3:77060783..77060789,+#_82099c57e0a429e7776f0c5a4c5e0b92p@chr3:77060783..77060789, +
2.55e-98FFCP PHASE2:Hg19::chr2:134472430..134472432,+#_82099c57e0a429e7776f0c5a4c5e0b92p@chr2:134472430..134472432, +
2.55e-98FFCP PHASE2:Hg19::chr16:70563415..70563420,+#_82099c57e0a429e7776f0c5a4c5e0b92p4@SNORD111B
2.55e-98FFCP PHASE2:Hg19::chr3:13992334..13992338,-#_82099c57e0a429e7776f0c5a4c5e0b92p@chr3:13992334..13992338, -
2.55e-98FFCP PHASE2:Hg19::chr5:103200303..103200307,+#_82099c57e0a429e7776f0c5a4c5e0b92p@chr5:103200303..103200307, +
2.55e-98FFCP PHASE2:Hg19::chr3:77060783..77060789,+#_82099c57e0a429e7776f0c5a4c5e0b92p@chr3:77060783..77060789, +
2.55e-98FFCP PHASE1:Hg19::chrX:25873187..25873209,+#_82099c57e0a429e7776f0c5a4c5e0b92p@chrX:25873187..25873209, +
2.55e-98FFCP PHASE2:Hg19::chr2:21277180..21277193,+#_82099c57e0a429e7776f0c5a4c5e0b92p@chr2:21277180..21277193, +
2.55e-98FFCP PHASE1:Hg19::chr3:131712314..131712315,-#_82099c57e0a429e7776f0c5a4c5e0b92p@chr3:131712314..131712315, -
2.55e-98FFCP PHASE1:Hg19::chr5:58471631..58471634,+#_82099c57e0a429e7776f0c5a4c5e0b92p@chr5:58471631..58471634, +
2.55e-98FFCP PHASE1:Hg19::chr5:24554148..24554153,+#_82099c57e0a429e7776f0c5a4c5e0b92p1@ENST00000510391
2.55e-98FFCP PHASE1:Hg19::chr10:22768515..22768517,+#_82099c57e0a429e7776f0c5a4c5e0b92p@chr10:22768515..22768517, +
2.55e-98FFCP PHASE1:Hg19::chr12:72875355..72875358,+#_82099c57e0a429e7776f0c5a4c5e0b92p@chr12:72875355..72875358, +
2.55e-98FFCP PHASE2:Hg19::chr1:1413227..1413230,+#_82099c57e0a429e7776f0c5a4c5e0b92p2@ATAD3B
2.55e-98FFCP PHASE1:Hg19::chr2:29484252..29484254,-#_82099c57e0a429e7776f0c5a4c5e0b92p@chr2:29484252..29484254, -
2.55e-98FFCP PHASE1:Hg19::chr8:133945378..133945386,+#_82099c57e0a429e7776f0c5a4c5e0b92p@chr8:133945378..133945386, +
2.55e-98FFCP PHASE1:Hg19::chr3:181328472..181328478,+#_82099c57e0a429e7776f0c5a4c5e0b92p25@SOX2-OT
2.55e-98FFCP PHASE2:Hg19::chr2:242808350..242808356,+#_82099c57e0a429e7776f0c5a4c5e0b92p2@LOC100131763
2.55e-98FFCP PHASE2:Hg19::chr14:76447439..76447452,-#_82099c57e0a429e7776f0c5a4c5e0b92p18@TGFB3
2.55e-98FFCP PHASE1:Hg19::chr2:134472430..134472432,+#_82099c57e0a429e7776f0c5a4c5e0b92p@chr2:134472430..134472432, +
2.55e-98FFCP PHASE1:Hg19::chr5:126962527..126962529,-#_82099c57e0a429e7776f0c5a4c5e0b92p@chr5:126962527..126962529, -
2.55e-98FFCP PHASE2:Hg19::chr10:22768515..22768517,+#_82099c57e0a429e7776f0c5a4c5e0b92p@chr10:22768515..22768517, +