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UBERON:0004061

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Name:neural tube mantle layer
Namespace:FANTOM
Definition:"the layer of glia and differentiating neurons that will form the gray matter of the spinal cord; this lies between the ventricular and marginal layers and includes the basal and alar plates" [MP:0009690]
Xrefs:
links:
EMAPA:17148
Synonyms: "neural tube intermediate zone" EXACT [MP:0009690]

Ontology association
Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.

link to ontology dataset
data


Parents

is_a:UBERON:0000119(cell layer),UBERON:0004121(ectoderm-derived structure),UBERON:0005291(embryonic tissue)
part_of:UBERON:0000922(embryo),UBERON:0001049(neural tube)



Children

part of:UBERON:0005882 (neural tube alar plate)

Ontology Tree: Loaded from BioPortal


FF samples
It includes FANTOM5 samples that overlay the Uberon ontology




Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0004061 (neural tube mantle layer), sorted by p-values
Analyst: Hideya Kawaji

link to source dataset
human : data
mouse : data


P-valueFFCPShort description
7.47e-44FFCP PHASE2:Mm9::chr1:158200818..158200829,-#_0756a8debdf996dedae7c834512b1e3cp@chr1:158200818..158200829, -
7.47e-44FFCP PHASE1:Mm9::chr1:158200818..158200829,-#_0756a8debdf996dedae7c834512b1e3cp@chr1:158200818..158200829, -
2.87e-30FFCP PHASE2:Mm9::chr1:155500060..155500061,+#_f638f3679b27f4570154a8082c0274d8p19@Rgs8
2.87e-30FFCP PHASE2:Mm9::chr15:22719411..22719436,+#_f638f3679b27f4570154a8082c0274d8+, p@chr15:22719411..22719436
2.87e-30FFCP PHASE1:Mm9::chr1:155500060..155500061,+#_f638f3679b27f4570154a8082c0274d8p19@Rgs8
2.87e-30FFCP PHASE1:Mm9::chr15:22719411..22719436,+#_f638f3679b27f4570154a8082c0274d8p@chr15:22719411..22719436, +
3.06e-23FFCP PHASE2:Mm9::chr2:127098489..127098493,-#_c52155f6c30f957492a7a0234dd4f846p@chr2:127098489..127098493, -
3.06e-23FFCP PHASE1:Mm9::chr2:127098489..127098493,-#_c52155f6c30f957492a7a0234dd4f846p@chr2:127098489..127098493, -
5.07e-23FFCP PHASE1:Mm9::chr2:158208771..158208772,+#_97d377cfd56825084bf211fbd29b439ap@chr2:158208771..158208772, +
5.07e-23FFCP PHASE1:Mm9::chr16:96721083..96721092,+#_97d377cfd56825084bf211fbd29b439ap@chr16:96721083..96721092, +
5.07e-23FFCP PHASE2:Mm9::chr16:96721083..96721092,+#_97d377cfd56825084bf211fbd29b439ap@chr16:96721083..96721092, +
5.07e-23FFCP PHASE2:Mm9::chr2:158208771..158208772,+#_97d377cfd56825084bf211fbd29b439ap@chr2:158208771..158208772, +
8.39e-23FFCP PHASE1:Mm9::chr6:20963159..20963195,-#_c3b6193dc6bb88e96fb32fea425015c9p1@ENSMUST00000157206
8.39e-23FFCP PHASE2:Mm9::chr6:20963159..20963195,-#_c3b6193dc6bb88e96fb32fea425015c9p1@ENSMUST00000157206
1.39e-22FFCP PHASE1:Mm9::chr6:119367617..119367641,-#_b66af3cef896d9b248a796116833049ep7@Adipor2
1.39e-22FFCP PHASE2:Mm9::chr6:119367617..119367641,-#_b66af3cef896d9b248a796116833049ep7@Adipor2
5.15e-19FFCP PHASE1:Mm9::chr14:52528327..52528336,-#_b46ddccef901f47d0b411e18d2515bcfp@chr14:52528327..52528336, -
5.15e-19FFCP PHASE2:Mm9::chr14:52528327..52528336,-#_b46ddccef901f47d0b411e18d2515bcfp@chr14:52528327..52528336, -
7.74e-19FFCP PHASE1:Mm9::chr19:32177340..32177351,-#_31c40c1842fbcf4daef078700205a1bbp@chr19:32177340..32177351, -
7.74e-19FFCP PHASE2:Mm9::chr19:32177340..32177351,-#_31c40c1842fbcf4daef078700205a1bbp@chr19:32177340..32177351, -
1.16e-18FFCP PHASE2:Mm9::chr4:98216369..98216408,+#_8ed295f0ed9ed442d2253cbd9048887fp@chr4:98216369..98216408, +
1.16e-18FFCP PHASE2:Mm9::chr4:83035887..83035924,-#_8ed295f0ed9ed442d2253cbd9048887fp@chr4:83035887..83035924, -
1.16e-18FFCP PHASE1:Mm9::chr4:83035887..83035924,-#_8ed295f0ed9ed442d2253cbd9048887fp@chr4:83035887..83035924, -
1.16e-18FFCP PHASE1:Mm9::chr4:98216369..98216408,+#_8ed295f0ed9ed442d2253cbd9048887fp@chr4:98216369..98216408, +
1.74e-18FFCP PHASE2:Mm9::chr8:123151369..123151375,+#_3984f9599a5208edf40a1f545309799ep@chr8:123151369..123151375, +
1.74e-18FFCP PHASE1:Mm9::chr8:123151369..123151375,+#_3984f9599a5208edf40a1f545309799ep@chr8:123151369..123151375, +
2.59e-18FFCP PHASE2:Mm9::chr5:128949415..128949424,+#_aab77e41a6d8074cc788cabe205424d1p@chr5:128949415..128949424, +
2.59e-18FFCP PHASE2:Mm9::chr8:108091532..108091548,-#_aab77e41a6d8074cc788cabe205424d1p@chr8:108091532..108091548, -
2.59e-18FFCP PHASE1:Mm9::chr8:108734860..108734874,+#_aab77e41a6d8074cc788cabe205424d1p3@Prmt7
2.59e-18FFCP PHASE2:Mm9::chr8:108734860..108734874,+#_aab77e41a6d8074cc788cabe205424d1p3@Prmt7
2.59e-18FFCP PHASE1:Mm9::chr8:108091532..108091548,-#_aab77e41a6d8074cc788cabe205424d1p@chr8:108091532..108091548, -
2.59e-18FFCP PHASE1:Mm9::chr5:128949415..128949424,+#_aab77e41a6d8074cc788cabe205424d1p@chr5:128949415..128949424, +
6.79e-16FFCP PHASE2:Mm9::chr1:101686777..101686780,+#_a06711035f1763cbb6ca38e65e0ca92cp@chr1:101686777..101686780, +
6.79e-16FFCP PHASE1:Mm9::chr1:101686777..101686780,+#_a06711035f1763cbb6ca38e65e0ca92cp@chr1:101686777..101686780, +
9.51e-16FFCP PHASE1:Mm9::chr9:113701949..113701960,+#_44d85ed1373f0379a88442ad5ff82b3dp9@Clasp2
9.51e-16FFCP PHASE1:Mm9::chr17:69476739..69476749,+#_44d85ed1373f0379a88442ad5ff82b3dp@chr17:69476739..69476749, +
9.51e-16FFCP PHASE2:Mm9::chr17:69476739..69476749,+#_44d85ed1373f0379a88442ad5ff82b3dp@chr17:69476739..69476749, +
9.51e-16FFCP PHASE2:Mm9::chr9:113701949..113701960,+#_44d85ed1373f0379a88442ad5ff82b3dp9@Clasp2
9.51e-16FFCP PHASE1:Mm9::chr6:120043366..120043377,+#_44d85ed1373f0379a88442ad5ff82b3dp3@Ninj2
9.51e-16FFCP PHASE2:Mm9::chr10:115580937..115580958,+#_44d85ed1373f0379a88442ad5ff82b3dp6@Ptprr
9.51e-16FFCP PHASE2:Mm9::chr6:120043366..120043377,+#_44d85ed1373f0379a88442ad5ff82b3dp3@Ninj2
9.51e-16FFCP PHASE1:Mm9::chr10:115580937..115580958,+#_44d85ed1373f0379a88442ad5ff82b3dp6@Ptprr
1.33e-15FFCP PHASE2:Mm9::chr11:67466144..67466155,+#_d78e46d43994b882b5aa81c58d7eec07p19@Gas7
1.33e-15FFCP PHASE1:Mm9::chr11:67466144..67466155,+#_d78e46d43994b882b5aa81c58d7eec07p19@Gas7
1.86e-15FFCP PHASE1:Mm9::chr11:55886412..55886420,+#_21a13ea6a15828b42b4d5330f0ca7422+, p@chr11:55886412..55886420
1.86e-15FFCP PHASE1:Mm9::chr10:111706834..111706844,+#_21a13ea6a15828b42b4d5330f0ca7422p@chr10:111706834..111706844, +
1.86e-15FFCP PHASE2:Mm9::chr14:33139881..33139891,+#_21a13ea6a15828b42b4d5330f0ca7422p@chr14:33139881..33139891, +
1.86e-15FFCP PHASE2:Mm9::chr10:111706834..111706844,+#_21a13ea6a15828b42b4d5330f0ca7422p@chr10:111706834..111706844, +
1.86e-15FFCP PHASE2:Mm9::chr12:104552967..104552983,-#_21a13ea6a15828b42b4d5330f0ca7422p1@uc007ovb.1
1.86e-15FFCP PHASE2:Mm9::chr11:55886412..55886420,+#_21a13ea6a15828b42b4d5330f0ca7422p@chr11:55886412..55886420, +
1.86e-15FFCP PHASE1:Mm9::chr12:104552967..104552983,-#_21a13ea6a15828b42b4d5330f0ca7422p1@uc007ovb.1
1.86e-15FFCP PHASE1:Mm9::chr5:125342666..125342671,-#_21a13ea6a15828b42b4d5330f0ca7422p15@Ccdc92
1.86e-15FFCP PHASE1:Mm9::chr19:47099743..47099759,+#_21a13ea6a15828b42b4d5330f0ca7422p@chr19:47099743..47099759, +
1.86e-15FFCP PHASE1:Mm9::chr17:8492594..8492603,-#_21a13ea6a15828b42b4d5330f0ca7422p@chr17:8492594..8492603, -
1.86e-15FFCP PHASE1:Mm9::chr14:33139881..33139891,+#_21a13ea6a15828b42b4d5330f0ca7422p@chr14:33139881..33139891, +
1.86e-15FFCP PHASE2:Mm9::chr5:125342666..125342671,-#_21a13ea6a15828b42b4d5330f0ca7422p15@Ccdc92
1.86e-15FFCP PHASE2:Mm9::chr17:8492594..8492603,-#_21a13ea6a15828b42b4d5330f0ca7422p@chr17:8492594..8492603, -
1.86e-15FFCP PHASE2:Mm9::chr19:47099743..47099759,+#_21a13ea6a15828b42b4d5330f0ca7422p@chr19:47099743..47099759, +
3.62e-14FFCP PHASE2:Mm9::chr19:55972431..55972440,+#_2f31e58629b39d7f342c22819ecd5250p63@Tcf7l2
3.62e-14FFCP PHASE1:Mm9::chr16:96720848..96720858,+#_2f31e58629b39d7f342c22819ecd5250p@chr16:96720848..96720858, +
3.62e-14FFCP PHASE2:Mm9::chr16:96720848..96720858,+#_2f31e58629b39d7f342c22819ecd5250p@chr16:96720848..96720858, +
3.62e-14FFCP PHASE1:Mm9::chr19:55972431..55972440,+#_2f31e58629b39d7f342c22819ecd5250p63@Tcf7l2
4.85e-14FFCP PHASE1:Mm9::chr14:93478934..93478944,-#_72e850988e30dd8efd2ddfd0109dd605p@chr14:93478934..93478944, -
4.85e-14FFCP PHASE2:Mm9::chr14:93478934..93478944,-#_72e850988e30dd8efd2ddfd0109dd605p@chr14:93478934..93478944, -
6.5e-14FFCP PHASE2:Mm9::chr2:157163160..157163163,-#_9c719bec5a1d947b6e17f6bf693f7aadp2@Ghrh
6.5e-14FFCP PHASE1:Mm9::chr2:157163160..157163163,-#_9c719bec5a1d947b6e17f6bf693f7aadp2@Ghrh
8.69e-14FFCP PHASE2:Mm9::chr10:19891807..19891818,+#_721b8d19b518598c01a09fa6f2614c83p@chr10:19891807..19891818, +
8.69e-14FFCP PHASE2:Mm9::chr1:6477452..6477459,+#_721b8d19b518598c01a09fa6f2614c83p8@St18
8.69e-14FFCP PHASE1:Mm9::chr10:19891807..19891818,+#_721b8d19b518598c01a09fa6f2614c83p@chr10:19891807..19891818, +
8.69e-14FFCP PHASE1:Mm9::chr1:6477452..6477459,+#_721b8d19b518598c01a09fa6f2614c83p8@St18
8.69e-14FFCP PHASE1:Mm9::chr13:97841389..97841402,+#_721b8d19b518598c01a09fa6f2614c83p7@Fam169a
8.69e-14FFCP PHASE1:Mm9::chr2:31133553..31133564,+#_721b8d19b518598c01a09fa6f2614c83+, p@chr2:31133553..31133564
8.69e-14FFCP PHASE2:Mm9::chr2:31133553..31133564,+#_721b8d19b518598c01a09fa6f2614c83p@chr2:31133553..31133564, +
8.69e-14FFCP PHASE2:Mm9::chr13:97841389..97841402,+#_721b8d19b518598c01a09fa6f2614c83p7@Fam169a
1.16e-13FFCP PHASE2:Mm9::chr9:103085667..103085678,+#_ef56e87309440891d72ab30ada9b3dfbp@chr9:103085667..103085678, +
1.16e-13FFCP PHASE2:Mm9::chr10:3557489..3557496,-#_ef56e87309440891d72ab30ada9b3dfbp9@Oprm1
1.16e-13FFCP PHASE1:Mm9::chr9:103085667..103085678,+#_ef56e87309440891d72ab30ada9b3dfbp@chr9:103085667..103085678, +
1.16e-13FFCP PHASE1:Mm9::chr2:163149068..163149077,+#_ef56e87309440891d72ab30ada9b3dfbp@chr2:163149068..163149077, +
1.16e-13FFCP PHASE1:Mm9::chr10:3557489..3557496,-#_ef56e87309440891d72ab30ada9b3dfbp9@Oprm1
1.16e-13FFCP PHASE2:Mm9::chr2:163149068..163149077,+#_ef56e87309440891d72ab30ada9b3dfbp@chr2:163149068..163149077, +
1.55e-13FFCP PHASE1:Mm9::chr5:123300144..123300151,+#_01aecfc4cb6abbe778799d4d1531fc32p5@Rnf34
1.55e-13FFCP PHASE1:Mm9::chr11:52045677..52045682,+#_01aecfc4cb6abbe778799d4d1531fc32p6@Skp1a
1.55e-13FFCP PHASE2:Mm9::chr5:123300144..123300151,+#_01aecfc4cb6abbe778799d4d1531fc32p5@Rnf34
1.55e-13FFCP PHASE2:Mm9::chr11:52045677..52045682,+#_01aecfc4cb6abbe778799d4d1531fc32p6@Skp1a
2.06e-13FFCP PHASE1:Mm9::chr6:45010099..45010108,+#_c2020c2c41b128d708f7398a97a380f5p13@Cntnap2
2.06e-13FFCP PHASE2:Mm9::chr7:52184898..52184907,-#_c2020c2c41b128d708f7398a97a380f5p6@Ap2a1
2.06e-13FFCP PHASE1:Mm9::chr7:52184898..52184907,-#_c2020c2c41b128d708f7398a97a380f5p6@Ap2a1
2.06e-13FFCP PHASE2:Mm9::chr4:43519210..43519232,+#_c2020c2c41b128d708f7398a97a380f5p@chr4:43519210..43519232, +
2.06e-13FFCP PHASE2:Mm9::chr10:31110259..31110265,-#_c2020c2c41b128d708f7398a97a380f5p@chr10:31110259..31110265, -
2.06e-13FFCP PHASE2:Mm9::chr6:126588640..126588687,-#_c2020c2c41b128d708f7398a97a380f5p@chr6:126588640..126588687, -
2.06e-13FFCP PHASE1:Mm9::chr10:31110259..31110265,-#_c2020c2c41b128d708f7398a97a380f5p@chr10:31110259..31110265, -
2.06e-13FFCP PHASE2:Mm9::chr6:45010099..45010108,+#_c2020c2c41b128d708f7398a97a380f5p13@Cntnap2
2.06e-13FFCP PHASE1:Mm9::chr6:126588640..126588687,-#_c2020c2c41b128d708f7398a97a380f5p@chr6:126588640..126588687, -
2.06e-13FFCP PHASE1:Mm9::chr4:43519210..43519232,+#_c2020c2c41b128d708f7398a97a380f5p@chr4:43519210..43519232, +
1.2e-12FFCP PHASE2:Mm9::chr10:4424212..4424215,+#_5e3c1eadfcb5f300eafa91e4c594a5ebp3@Rgs17
1.2e-12FFCP PHASE1:Mm9::chr10:4424212..4424215,+#_5e3c1eadfcb5f300eafa91e4c594a5ebp3@Rgs17
2.01e-12FFCP PHASE2:Mm9::chr10:85495564..85495574,+#_2780c2ab5c1a1cd8c74047249bea463ep14@Fbxo7
2.01e-12FFCP PHASE1:Mm9::chr10:85495564..85495574,+#_2780c2ab5c1a1cd8c74047249bea463ep14@Fbxo7
2.01e-12FFCP PHASE2:Mm9::chr2:155645140..155645170,-#_2780c2ab5c1a1cd8c74047249bea463ep1@ENSMUST00000124586
2.01e-12FFCP PHASE1:Mm9::chr2:155645140..155645170,-#_2780c2ab5c1a1cd8c74047249bea463ep1@ENSMUST00000124586