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UBERON:0004134

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Name:proximal tubule
Namespace:FANTOM
Definition:"In mammals, the proximal tubule is a nephron tubule that connects Bowman's capsule to the loop of Henle. It has a brush border epithelial morphology[GO]." [GO:0072014]
Xrefs:
links:

BTO:0001498
EMAPA:28281
MA:0002611

MESH:A.05.810.453.736.560.570
Synonyms: "proximal kidney tubule" EXACT [MESH:A.05.810.453.736.560.570]
"renal proximal tubule" EXACT []
Comments:todo - ensure definition works across species.

Ontology association
Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.

link to ontology dataset
data


Parents

is_a:UBERON:0006853(renal cortex tubule)
part_of:UBERON:0001225(cortex of kidney),UBERON:0001231(nephron tubule)



Children

part of:CL:0002306 (epithelial cell of proximal tubule)

Ontology Tree: Loaded from BioPortal


FF samples
It includes FANTOM5 samples that overlay the Uberon ontology


Human (Homo sapiens)

  • 11515-119H3 (Renal Proximal Tubular Epithelial Cell, donor1)
  • 11595-120H2 (Renal Proximal Tubular Epithelial Cell, donor2)
  • 11676-122H2 (Renal Proximal Tubular Epithelial Cell, donor3)


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0004134 (proximal tubule), sorted by p-values
Analyst: Hideya Kawaji

link to source dataset
human : data
mouse : data


P-valueFFCPShort description
8.98e-131FFCP PHASE2:Hg19::chr5:167718782..167718785,+#_a8e05a71ad4e312b6f59f8f65b66ad1dp10@WWC1
8.98e-131FFCP PHASE1:Hg19::chr5:167718782..167718785,+#_a8e05a71ad4e312b6f59f8f65b66ad1dp10@WWC1
1.01e-74FFCP PHASE1:Hg19::chr3:149260147..149260154,-#_2f9104baa243103a488eda0a0c9efb87p39@WWTR1
1.01e-74FFCP PHASE2:Hg19::chr3:149260147..149260154,-#_2f9104baa243103a488eda0a0c9efb87p39@WWTR1
1.24e-73FFCP PHASE1:Hg19::chr17:46679250..46679298,+#_a95ac0c1d6533b1b18388fefc770ee52p1@ENST00000491264
1.24e-73FFCP PHASE2:Hg19::chr17:46679250..46679298,+#_a95ac0c1d6533b1b18388fefc770ee52p1@ENST00000491264
2.39e-66FFCP PHASE2:Hg19::chr16:61687533..61687551,-#_0bb7f79c09131bdf2fa9d1662e91db7dp@chr16:61687533..61687551, -
2.39e-66FFCP PHASE1:Hg19::chr16:61687533..61687551,-#_0bb7f79c09131bdf2fa9d1662e91db7dp@chr16:61687533..61687551, -
2.39e-66FFCP PHASE2:Hg19::chr16:62055187..62055188,+#_0bb7f79c09131bdf2fa9d1662e91db7dp@chr16:62055187..62055188, +
2.39e-66FFCP PHASE1:Hg19::chr16:62055187..62055188,+#_0bb7f79c09131bdf2fa9d1662e91db7dp@chr16:62055187..62055188, +
2.39e-66FFCP PHASE2:Hg19::chr3:123667850..123667851,+#_0bb7f79c09131bdf2fa9d1662e91db7dp@chr3:123667850..123667851, +
2.39e-66FFCP PHASE1:Hg19::chr3:123667850..123667851,+#_0bb7f79c09131bdf2fa9d1662e91db7dp@chr3:123667850..123667851, +
2.39e-66FFCP PHASE2:Hg19::chr8:6614884..6614885,+#_0bb7f79c09131bdf2fa9d1662e91db7dp@chr8:6614884..6614885, +
2.39e-66FFCP PHASE1:Hg19::chr8:6614884..6614885,+#_0bb7f79c09131bdf2fa9d1662e91db7dp@chr8:6614884..6614885, +
1.22e-59FFCP PHASE1:Hg19::chr15:66420804..66420837,-#_0ac78e7d05cc1f43df1b20f15053946ap4@MEGF11
1.22e-59FFCP PHASE2:Hg19::chr15:66420804..66420837,-#_0ac78e7d05cc1f43df1b20f15053946ap4@MEGF11
3.75e-53FFCP PHASE2:Hg19::chr9:114828174..114828179,+#_217034cd625f56be739eea2a102a96cfp@chr9:114828174..114828179, +
3.75e-53FFCP PHASE1:Hg19::chr9:114828174..114828179,+#_217034cd625f56be739eea2a102a96cfp@chr9:114828174..114828179, +
1.65e-46FFCP PHASE1:Hg19::chr7:140227349..140227360,-#_f67b33414ffa32132e935d2ef4c955d9p@chr7:140227349..140227360, -
1.65e-46FFCP PHASE2:Hg19::chr7:140227349..140227360,-#_f67b33414ffa32132e935d2ef4c955d9p@chr7:140227349..140227360, -
7.81e-45FFCP PHASE2:Hg19::chr6:30890373..30890381,+#_88135949b89163fe616c1ec16c478106p9@VARS2
7.81e-45FFCP PHASE1:Hg19::chr6:30890373..30890381,+#_88135949b89163fe616c1ec16c478106p9@VARS2
6.91e-39FFCP PHASE2:Hg19::chr6:30890456..30890482,+#_e3c9ae7c8ab6abf5f054f7474f05e950p11@VARS2
6.91e-39FFCP PHASE1:Hg19::chr6:30890456..30890482,+#_e3c9ae7c8ab6abf5f054f7474f05e950p11@VARS2
1.49e-38FFCP PHASE2:Hg19::chr11:33718564..33718585,-#_d033afa505864c8101a0ec08b36e4455p1@ENST00000534431
1.49e-38FFCP PHASE1:Hg19::chr11:33718564..33718585,-#_d033afa505864c8101a0ec08b36e4455p1@ENST00000534431
2.64e-38FFCP PHASE2:Hg19::chr7:53466339..53466356,-#_5dc3df26ffd50c35a99e63450ebefc84p@chr7:53466339..53466356, -
2.64e-38FFCP PHASE1:Hg19::chr7:53466339..53466356,-#_5dc3df26ffd50c35a99e63450ebefc84p@chr7:53466339..53466356, -
3.48e-38FFCP PHASE1:Hg19::chr17:18160552..18160565,-#_959734aaf49d657c77ed166b59b2be41p@chr17:18160552..18160565, -
3.48e-38FFCP PHASE2:Hg19::chr17:18160552..18160565,-#_959734aaf49d657c77ed166b59b2be41p@chr17:18160552..18160565, -
3.86e-38FFCP PHASE1:Hg19::chr3:190105820..190105829,+#_d6f8d878e36f9f95bbb3425d72a6b06dp3@CLDN16
3.86e-38FFCP PHASE2:Hg19::chr3:190105820..190105829,+#_d6f8d878e36f9f95bbb3425d72a6b06dp3@CLDN16
5.76e-38FFCP PHASE2:Hg19::chr1:1100457..1100470,+#_d02a2df7fe96fa7389646ee35ea67769p@chr1:1100457..1100470, +
5.76e-38FFCP PHASE1:Hg19::chr1:1100457..1100470,+#_d02a2df7fe96fa7389646ee35ea67769p@chr1:1100457..1100470, +
2.08e-36FFCP PHASE1:Hg19::chr9:133986782..133986794,+#_80d8daf68375e5a382c64011aa1d2e74p4@AIF1L
2.08e-36FFCP PHASE2:Hg19::chr9:133986782..133986794,+#_80d8daf68375e5a382c64011aa1d2e74p4@AIF1L
2.25e-35FFCP PHASE1:Hg19::chr10:102495147..102495159,+#_4cbfb0fffbe5e573685cb4f84e8cf793p4@PAX2
2.25e-35FFCP PHASE2:Hg19::chr10:102495147..102495159,+#_4cbfb0fffbe5e573685cb4f84e8cf793p4@PAX2
3.2e-35FFCP PHASE1:Hg19::chr12:6485243..6485254,-#_cb582b8d04726300ba735214656a4fbap18@SCNN1A
3.2e-35FFCP PHASE2:Hg19::chr12:6485243..6485254,-#_cb582b8d04726300ba735214656a4fbap18@SCNN1A
5.96e-34FFCP PHASE1:Hg19::chr6:31023284..31023287,-#_66109a9b1eaf5977fbeed0e193be1aebp@chr6:31023284..31023287, -
5.96e-34FFCP PHASE2:Hg19::chr6:31023284..31023287,-#_66109a9b1eaf5977fbeed0e193be1aebp@chr6:31023284..31023287, -
2.09e-33FFCP PHASE1:Hg19::chr2:113994209..113994222,-#_bea44a0717ed293934c870e63776f676p11@PAX8
2.09e-33FFCP PHASE2:Hg19::chr2:113994209..113994222,-#_bea44a0717ed293934c870e63776f676p11@PAX8
1.41e-32FFCP PHASE2:Hg19::chr14:57960456..57960478,-#_6ea820d651c7ada64da35bfe1d657ff1p2@C14orf105
1.41e-32FFCP PHASE1:Hg19::chr14:57960456..57960478,-#_6ea820d651c7ada64da35bfe1d657ff1p2@C14orf105
2.17e-32FFCP PHASE1:Hg19::chr3:190105935..190105966,+#_9837bdce7a30848ad8441e0c277b3d56p1@CLDN16
2.17e-32FFCP PHASE2:Hg19::chr3:190105935..190105966,+#_9837bdce7a30848ad8441e0c277b3d56p1@CLDN16
3.1e-30FFCP PHASE2:Hg19::chr3:112127710..112127713,-#_761e6f658924ebb8383222732e4ebfdfp@chr3:112127710..112127713, -
3.1e-30FFCP PHASE1:Hg19::chr3:112127710..112127713,-#_761e6f658924ebb8383222732e4ebfdfp@chr3:112127710..112127713, -
4.84e-30FFCP PHASE2:Hg19::chr20:49347516..49347535,-#_029a1b8e18037b0c18c259f0db50a874p@chr20:49347516..49347535, -
4.84e-30FFCP PHASE1:Hg19::chr20:49347516..49347535,-#_029a1b8e18037b0c18c259f0db50a874p@chr20:49347516..49347535, -
6.17e-30FFCP PHASE2:Hg19::chr6:30890348..30890372,+#_41094a97b7ac42864c6d816b6f465a14p5@VARS2
6.17e-30FFCP PHASE1:Hg19::chr6:30890348..30890372,+#_41094a97b7ac42864c6d816b6f465a14p5@VARS2
8.26e-30FFCP PHASE2:Hg19::chr9:133986807..133986821,+#_f0888a2725374dae240091201bcc3ed5p3@AIF1L
8.26e-30FFCP PHASE1:Hg19::chr9:133986807..133986821,+#_f0888a2725374dae240091201bcc3ed5p3@AIF1L
8.74e-30FFCP PHASE2:Hg19::chr3:190106002..190106011,+#_431185e4017a509a9f2f61cf5521a5dcp4@CLDN16
8.74e-30FFCP PHASE1:Hg19::chr3:190106002..190106011,+#_431185e4017a509a9f2f61cf5521a5dcp4@CLDN16
4.28e-29FFCP PHASE1:Hg19::chr7:7606139..7606151,-#_adfabb1338255ccc8ff619f6cafec05dp@chr7:7606139..7606151, -
4.28e-29FFCP PHASE2:Hg19::chr7:7606139..7606151,-#_adfabb1338255ccc8ff619f6cafec05dp@chr7:7606139..7606151, -
5.09e-29FFCP PHASE2:Hg19::chr6:30890599..30890626,+#_2260373560b2727eb669bc7f96ea59bdp4@VARS2
5.09e-29FFCP PHASE1:Hg19::chr6:30890599..30890626,+#_2260373560b2727eb669bc7f96ea59bdp4@VARS2
4.74e-28FFCP PHASE1:Hg19::chr11:117695245..117695263,-#_723efa28220f037013375cc7c2f05367p7@FXYD2
4.74e-28FFCP PHASE2:Hg19::chr11:117695245..117695263,-#_723efa28220f037013375cc7c2f05367p7@FXYD2
2.38e-27FFCP PHASE1:Hg19::chr11:117695233..117695244,-#_375e8bbc1775a16f657e72934f822a5cp11@FXYD2
2.38e-27FFCP PHASE2:Hg19::chr11:117695233..117695244,-#_375e8bbc1775a16f657e72934f822a5cp11@FXYD2
3.11e-27FFCP PHASE1:Hg19::chr10:91043499..91043510,+#_dedd9f3d7d87b073b0a3bab27de6556ep2@ENST00000354541
3.11e-27FFCP PHASE2:Hg19::chr10:91043499..91043510,+#_dedd9f3d7d87b073b0a3bab27de6556ep2@ENST00000354541
5.07e-27FFCP PHASE2:Hg19::chr1:17519128..17519138,+#_6825167a87574e7566b148b5eefe4340p@chr1:17519128..17519138, +
5.07e-27FFCP PHASE1:Hg19::chr1:17519128..17519138,+#_6825167a87574e7566b148b5eefe4340p@chr1:17519128..17519138, +
1.22e-26FFCP PHASE1:Hg19::chr18:77104123..77104150,+#_22cb997ef415e4889579061610892b97p5@ATP9B
1.22e-26FFCP PHASE2:Hg19::chr18:77104123..77104150,+#_22cb997ef415e4889579061610892b97p5@ATP9B
2.01e-25FFCP PHASE2:Hg19::chr7:98453821..98453843,-#_307a9e7f028abc61847ac88863817a7e-, p@chr7:98453821..98453843
2.01e-25FFCP PHASE1:Hg19::chr7:98453821..98453843,-#_307a9e7f028abc61847ac88863817a7ep@chr7:98453821..98453843, -
4.31e-25FFCP PHASE1:Hg19::chr2:167467988..167467993,-#_1c2b70b1f44d53a7657a758a92e4c084p@chr2:167467988..167467993, -
4.31e-25FFCP PHASE1:Hg19::chr9:133986740..133986750,+#_1c2b70b1f44d53a7657a758a92e4c084p7@AIF1L
4.31e-25FFCP PHASE2:Hg19::chr9:133986740..133986750,+#_1c2b70b1f44d53a7657a758a92e4c084p7@AIF1L
4.31e-25FFCP PHASE2:Hg19::chr2:167467988..167467993,-#_1c2b70b1f44d53a7657a758a92e4c084p@chr2:167467988..167467993, -
5.5e-25FFCP PHASE2:Hg19::chr2:189157368..189157381,-#_756cd5ed9cef41a7605328e321f152a5p@chr2:189157368..189157381, -
5.5e-25FFCP PHASE1:Hg19::chr2:189157368..189157381,-#_756cd5ed9cef41a7605328e321f152a5p@chr2:189157368..189157381, -
7.93e-25FFCP PHASE1:Hg19::chr9:119741711..119741743,-#_9089b107a6bd1c18742e01ed095c5698p@chr9:119741711..119741743, -
7.93e-25FFCP PHASE2:Hg19::chr9:119741711..119741743,-#_9089b107a6bd1c18742e01ed095c5698p@chr9:119741711..119741743, -
8.07e-25FFCP PHASE2:Hg19::chr19:51472081..51472088,-#_7c568511d01d5921ecb948cc5bb83246p8@KLK6
8.07e-25FFCP PHASE1:Hg19::chr19:51472081..51472088,-#_7c568511d01d5921ecb948cc5bb83246p8@KLK6
1.21e-24FFCP PHASE2:Hg19::chr7:27219833..27219845,-#_3d5d96ff08727a1ed6ec79b9aee1a83bp7@HOXA10
1.21e-24FFCP PHASE1:Hg19::chr7:27219833..27219845,-#_3d5d96ff08727a1ed6ec79b9aee1a83bp7@HOXA10
1.29e-24FFCP PHASE1:Hg19::chr20:6034241..6034256,-#_d9c2f55dfe3aefae37b65cd0e4ee9701p@chr20:6034241..6034256, -
1.29e-24FFCP PHASE2:Hg19::chr20:6034241..6034256,-#_d9c2f55dfe3aefae37b65cd0e4ee9701-, p@chr20:6034241..6034256
7.91e-24FFCP PHASE2:Hg19::chr21:41029235..41029269,+#_3f03d32d84f28eae7f004f0af351b7ecp2@B3GALT5
7.91e-24FFCP PHASE1:Hg19::chr21:41029235..41029269,+#_3f03d32d84f28eae7f004f0af351b7ecp2@B3GALT5
7.91e-24FFCP PHASE1:Hg19::chr11:117695415..117695426,-#_3f03d32d84f28eae7f004f0af351b7ecp3@FXYD2
7.91e-24FFCP PHASE2:Hg19::chr11:117695415..117695426,-#_3f03d32d84f28eae7f004f0af351b7ecp3@FXYD2
9.99e-24FFCP PHASE2:Hg19::chr18:3456189..3456200,+#_c80dbc7a4937a2c4efd22daa803aa85bp@chr18:3456189..3456200, +
9.99e-24FFCP PHASE1:Hg19::chr10:102505954..102505973,+#_c80dbc7a4937a2c4efd22daa803aa85bp3@PAX2
9.99e-24FFCP PHASE1:Hg19::chr18:3456189..3456200,+#_c80dbc7a4937a2c4efd22daa803aa85bp@chr18:3456189..3456200, +
9.99e-24FFCP PHASE2:Hg19::chr10:102505954..102505973,+#_c80dbc7a4937a2c4efd22daa803aa85bp3@PAX2
3.27e-23FFCP PHASE1:Hg19::chr12:6484832..6484841,+#_27203789cb9aab8bf4b5f1648d0c0297p@chr12:6484832..6484841, +
3.27e-23FFCP PHASE2:Hg19::chr12:6484832..6484841,+#_27203789cb9aab8bf4b5f1648d0c0297+, p@chr12:6484832..6484841
3.29e-23FFCP PHASE1:Hg19::chr3:43532224..43532252,-#_fb05df539063047ce63bb73d661bc0e6p@chr3:43532224..43532252, -
3.29e-23FFCP PHASE2:Hg19::chr3:43532224..43532252,-#_fb05df539063047ce63bb73d661bc0e6p@chr3:43532224..43532252, -