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UBERON:0004225

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Name:respiratory system smooth muscle
Namespace:FANTOM
Definition:"A portion of smooth muscle tissue that is part of a respiratory system [Obol]." [OBOL:automatic]
Xrefs:
links:
MA:0001830
Synonyms: "apparatus respiratorius involuntary muscle" EXACT [OBOL:automatic]
"apparatus respiratorius non-striated muscle" EXACT [OBOL:automatic]
"apparatus respiratorius smooth muscle" EXACT [OBOL:automatic]
"apparatus respiratorius smooth muscle tissue" EXACT [OBOL:automatic]
"involuntary muscle of apparatus respiratorius" EXACT [OBOL:automatic]
"involuntary muscle of respiratory system" EXACT [OBOL:automatic]
"non-striated muscle of apparatus respiratorius" EXACT [OBOL:automatic]
"non-striated muscle of respiratory system" EXACT [OBOL:automatic]
"respiratory system involuntary muscle" EXACT [OBOL:automatic]
"respiratory system non-striated muscle" EXACT [OBOL:automatic]
"respiratory system smooth muscle tissue" EXACT [OBOL:automatic]
"smooth muscle of apparatus respiratorius" EXACT [OBOL:automatic]
"smooth muscle of respiratory system" EXACT [OBOL:automatic]
"smooth muscle tissue of apparatus respiratorius" EXACT [OBOL:automatic]
"smooth muscle tissue of respiratory system" EXACT [OBOL:automatic]

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data


Parents

is_a:UBERON:0001135(smooth muscle tissue)
part_of:UBERON:0001004(respiratory system)



Children

is a:FF:11960-126C7 (Smooth muscle cells - airway, asthmatic, donor1),FF:11961-126C8 (Smooth muscle cells - airway, asthmatic, donor2),FF:11962-126C9 (Smooth muscle cells - airway, asthmatic, donor3),FF:11963-126D1 (Smooth muscle cells - airway, asthmatic, donor4),FF:11964-126D2 (Smooth muscle cells - airway, asthmatic, donor5),FF:11965-126D3 (Smooth muscle cells - airway, asthmatic, donor6),FF:11966-126D4 (Smooth muscle cells - airway, control, donor1),FF:11967-126D5 (Smooth muscle cells - airway, control, donor2),FF:11968-126D6 (Smooth muscle cells - airway, control, donor3),FF:11969-126D7 (Smooth muscle cells - airway, control, donor4)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology


Human (Homo sapiens)

  • 11960-126C7 (Smooth muscle cells - airway, asthmatic, donor1)
  • 11961-126C8 (Smooth muscle cells - airway, asthmatic, donor2)
  • 11962-126C9 (Smooth muscle cells - airway, asthmatic, donor3)
  • 11963-126D1 (Smooth muscle cells - airway, asthmatic, donor4)
  • 11964-126D2 (Smooth muscle cells - airway, asthmatic, donor5)
  • 11965-126D3 (Smooth muscle cells - airway, asthmatic, donor6)
  • 11966-126D4 (Smooth muscle cells - airway, control, donor1)
  • 11967-126D5 (Smooth muscle cells - airway, control, donor2)
  • 11968-126D6 (Smooth muscle cells - airway, control, donor3)
  • 11969-126D7 (Smooth muscle cells - airway, control, donor4)


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0004225 (respiratory system smooth muscle), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data


No analysis results