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UBERON:0004904

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Name:nerve connecting eye with brain
Namespace:FANTOM
Definition:"A nerve that connects the eye to the brain and carries the impulses formed by the retina to the visual cortex of the brain[BTO]." [BTO:0000966]
Xrefs:
links:

BTO:0000966
EV:0100351
FBbt:00001956

TADS:0000232
Synonyms: "optic nerve" BROAD [BTO:0000966]
"optic nerve (generic)" EXACT []
Comments:for the vertebrate-specific structure, see UBERON:0000941 (cranial nerve II)
Subset: grouping_class

Ontology association
Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.

link to ontology dataset
data


Parents

is_a:UBERON:0001021(nerve)
part_of:UBERON:0002104(visual system)



Children

is a:UBERON:0000941 (cranial nerve II)

Ontology Tree: Loaded from BioPortal


FF samples
It includes FANTOM5 samples that overlay the Uberon ontology


Human (Homo sapiens)


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0004904 (nerve connecting eye with brain), sorted by p-values
Analyst: Hideya Kawaji

link to source dataset
human : data
mouse : data


P-valueFFCPShort description
5.42e-195FFCP PHASE2:Hg19::chr12:57628762..57628773,-#_e7cfe1bc8f7c505cd20610af6a96eca7p@chr12:57628762..57628773, -
5.42e-195FFCP PHASE1:Hg19::chr12:57628762..57628773,-#_e7cfe1bc8f7c505cd20610af6a96eca7p@chr12:57628762..57628773, -
9.37e-99FFCP PHASE1:Hg19::chr14:105807545..105807554,+#_7e0d78cd1c75528ff3c6b23cf3b4439bp@chr14:105807545..105807554, +
9.37e-99FFCP PHASE2:Hg19::chr18:25161980..25161984,-#_7e0d78cd1c75528ff3c6b23cf3b4439b-, p@chr18:25161980..25161984
9.37e-99FFCP PHASE1:Hg19::chr1:62928606..62928608,+#_7e0d78cd1c75528ff3c6b23cf3b4439bp@chr1:62928606..62928608, +
9.37e-99FFCP PHASE1:Hg19::chr4:127394496..127394500,-#_7e0d78cd1c75528ff3c6b23cf3b4439bp@chr4:127394496..127394500, -
9.37e-99FFCP PHASE1:Hg19::chr5:149250331..149250335,-#_7e0d78cd1c75528ff3c6b23cf3b4439bp@chr5:149250331..149250335, -
9.37e-99FFCP PHASE2:Hg19::chr1:62928606..62928608,+#_7e0d78cd1c75528ff3c6b23cf3b4439bp@chr1:62928606..62928608, +
9.37e-99FFCP PHASE1:Hg19::chr18:25161980..25161984,-#_7e0d78cd1c75528ff3c6b23cf3b4439bp@chr18:25161980..25161984, -
9.37e-99FFCP PHASE2:Hg19::chr4:127394496..127394500,-#_7e0d78cd1c75528ff3c6b23cf3b4439bp@chr4:127394496..127394500, -
9.37e-99FFCP PHASE2:Hg19::chr2:188432107..188432111,+#_7e0d78cd1c75528ff3c6b23cf3b4439bp@chr2:188432107..188432111, +
9.37e-99FFCP PHASE2:Hg19::chr5:149250331..149250335,-#_7e0d78cd1c75528ff3c6b23cf3b4439bp@chr5:149250331..149250335, -
9.37e-99FFCP PHASE2:Hg19::chr7:15056365..15056368,-#_7e0d78cd1c75528ff3c6b23cf3b4439bp@chr7:15056365..15056368, -
9.37e-99FFCP PHASE2:Hg19::chr5:151258901..151258902,+#_7e0d78cd1c75528ff3c6b23cf3b4439bp@chr5:151258901..151258902, +
9.37e-99FFCP PHASE2:Hg19::chr2:60133192..60133194,-#_7e0d78cd1c75528ff3c6b23cf3b4439bp@chr2:60133192..60133194, -
9.37e-99FFCP PHASE2:Hg19::chr18:74702556..74702558,-#_7e0d78cd1c75528ff3c6b23cf3b4439bp@chr18:74702556..74702558, -
9.37e-99FFCP PHASE1:Hg19::chr7:15056365..15056368,-#_7e0d78cd1c75528ff3c6b23cf3b4439b-, p@chr7:15056365..15056368
9.37e-99FFCP PHASE2:Hg19::chr14:105807545..105807554,+#_7e0d78cd1c75528ff3c6b23cf3b4439bp@chr14:105807545..105807554, +
9.37e-99FFCP PHASE1:Hg19::chr2:188432107..188432111,+#_7e0d78cd1c75528ff3c6b23cf3b4439bp@chr2:188432107..188432111, +
9.37e-99FFCP PHASE1:Hg19::chr2:60133192..60133194,-#_7e0d78cd1c75528ff3c6b23cf3b4439b-, p@chr2:60133192..60133194
9.37e-99FFCP PHASE1:Hg19::chr18:74702556..74702558,-#_7e0d78cd1c75528ff3c6b23cf3b4439bp@chr18:74702556..74702558, -
9.37e-99FFCP PHASE1:Hg19::chr5:151258901..151258902,+#_7e0d78cd1c75528ff3c6b23cf3b4439bp@chr5:151258901..151258902, +
2.55e-98FFCP PHASE1:Hg19::chr7:88535666..88535671,+#_284345d22cda2bdcf64430d9e57eebc0p@chr7:88535666..88535671, +
2.55e-98FFCP PHASE2:Hg19::chr16:55740953..55740956,+#_284345d22cda2bdcf64430d9e57eebc0p@chr16:55740953..55740956, +
2.55e-98FFCP PHASE1:Hg19::chr16:51174920..51174928,-#_284345d22cda2bdcf64430d9e57eebc0p@chr16:51174920..51174928, -
2.55e-98FFCP PHASE2:Hg19::chr5:54763740..54763746,-#_284345d22cda2bdcf64430d9e57eebc0p10@PPAP2A
2.55e-98FFCP PHASE1:Hg19::chr10:37679189..37679193,+#_284345d22cda2bdcf64430d9e57eebc0p@chr10:37679189..37679193, +
2.55e-98FFCP PHASE1:Hg19::chr4:139501766..139501798,-#_284345d22cda2bdcf64430d9e57eebc0p@chr4:139501766..139501798, -
2.55e-98FFCP PHASE2:Hg19::chr7:73444812..73444816,+#_284345d22cda2bdcf64430d9e57eebc0p@chr7:73444812..73444816, +
2.55e-98FFCP PHASE2:Hg19::chr2:240176859..240176904,-#_284345d22cda2bdcf64430d9e57eebc0p@chr2:240176859..240176904, -
2.55e-98FFCP PHASE2:Hg19::chrX:131884370..131884375,-#_284345d22cda2bdcf64430d9e57eebc0p@chrX:131884370..131884375, -
2.55e-98FFCP PHASE1:Hg19::chr15:69850503..69850506,+#_284345d22cda2bdcf64430d9e57eebc0p3@ENST00000558781
2.55e-98FFCP PHASE2:Hg19::chr19:35978717..35978722,-#_284345d22cda2bdcf64430d9e57eebc0p@chr19:35978717..35978722, -
2.55e-98FFCP PHASE2:Hg19::chr14:78718132..78718157,+#_284345d22cda2bdcf64430d9e57eebc0p@chr14:78718132..78718157, +
2.55e-98FFCP PHASE2:Hg19::chr7:88535666..88535671,+#_284345d22cda2bdcf64430d9e57eebc0p@chr7:88535666..88535671, +
2.55e-98FFCP PHASE2:Hg19::chr12:78359873..78359882,+#_284345d22cda2bdcf64430d9e57eebc0p41@NAV3
2.55e-98FFCP PHASE2:Hg19::chr6:16317123..16317126,+#_284345d22cda2bdcf64430d9e57eebc0p@chr6:16317123..16317126, +
2.55e-98FFCP PHASE1:Hg19::chr14:68527802..68527806,+#_284345d22cda2bdcf64430d9e57eebc0p@chr14:68527802..68527806, +
2.55e-98FFCP PHASE2:Hg19::chr11:79291300..79291301,+#_284345d22cda2bdcf64430d9e57eebc0p@chr11:79291300..79291301, +
2.55e-98FFCP PHASE2:Hg19::chr16:51174920..51174928,-#_284345d22cda2bdcf64430d9e57eebc0p@chr16:51174920..51174928, -
2.55e-98FFCP PHASE2:Hg19::chr12:127992016..127992052,+#_284345d22cda2bdcf64430d9e57eebc0p@chr12:127992016..127992052, +
2.55e-98FFCP PHASE2:Hg19::chr12:72875355..72875358,+#_284345d22cda2bdcf64430d9e57eebc0p@chr12:72875355..72875358, +
2.55e-98FFCP PHASE2:Hg19::chr1:66713214..66713221,+#_284345d22cda2bdcf64430d9e57eebc0p@chr1:66713214..66713221, +
2.55e-98FFCP PHASE1:Hg19::chr14:88034381..88034386,-#_284345d22cda2bdcf64430d9e57eebc0p@chr14:88034381..88034386, -
2.55e-98FFCP PHASE1:Hg19::chr5:111570472..111570478,-#_284345d22cda2bdcf64430d9e57eebc0p@chr5:111570472..111570478, -
2.55e-98FFCP PHASE1:Hg19::chr2:171939999..171940009,-#_284345d22cda2bdcf64430d9e57eebc0p@chr2:171939999..171940009, -
2.55e-98FFCP PHASE2:Hg19::chr21:22483836..22483880,+#_284345d22cda2bdcf64430d9e57eebc0p@chr21:22483836..22483880, +
2.55e-98FFCP PHASE1:Hg19::chr1:7709325..7709329,+#_284345d22cda2bdcf64430d9e57eebc0p@chr1:7709325..7709329, +
2.55e-98FFCP PHASE2:Hg19::chr8:90420477..90420478,-#_284345d22cda2bdcf64430d9e57eebc0p@chr8:90420477..90420478, -
2.55e-98FFCP PHASE1:Hg19::chr7:77789390..77789399,-#_284345d22cda2bdcf64430d9e57eebc0p@chr7:77789390..77789399, -
2.55e-98FFCP PHASE1:Hg19::chr4:130221053..130221071,+#_284345d22cda2bdcf64430d9e57eebc0p@chr4:130221053..130221071, +
2.55e-98FFCP PHASE1:Hg19::chr13:64423563..64423566,+#_284345d22cda2bdcf64430d9e57eebc0p@chr13:64423563..64423566, +
2.55e-98FFCP PHASE1:Hg19::chr16:89970522..89970530,+#_284345d22cda2bdcf64430d9e57eebc0p9@TCF25
2.55e-98FFCP PHASE1:Hg19::chr16:66170755..66170759,-#_284345d22cda2bdcf64430d9e57eebc0p@chr16:66170755..66170759, -
2.55e-98FFCP PHASE1:Hg19::chr5:1414652..1414695,+#_284345d22cda2bdcf64430d9e57eebc0p@chr5:1414652..1414695, +
2.55e-98FFCP PHASE2:Hg19::chr18:45498690..45498695,-#_284345d22cda2bdcf64430d9e57eebc0p@chr18:45498690..45498695, -
2.55e-98FFCP PHASE2:Hg19::chr5:1414652..1414695,+#_284345d22cda2bdcf64430d9e57eebc0p@chr5:1414652..1414695, +
2.55e-98FFCP PHASE2:Hg19::chr16:89970522..89970530,+#_284345d22cda2bdcf64430d9e57eebc0p9@TCF25
2.55e-98FFCP PHASE1:Hg19::chr3:39827273..39827281,+#_284345d22cda2bdcf64430d9e57eebc0p@chr3:39827273..39827281, +
2.55e-98FFCP PHASE2:Hg19::chr7:95704857..95704906,+#_284345d22cda2bdcf64430d9e57eebc0p@chr7:95704857..95704906, +
2.55e-98FFCP PHASE1:Hg19::chr18:61506836..61506840,+#_284345d22cda2bdcf64430d9e57eebc0p@chr18:61506836..61506840, +
2.55e-98FFCP PHASE1:Hg19::chr1:154942133..154942148,-#_284345d22cda2bdcf64430d9e57eebc0p@chr1:154942133..154942148, -
2.55e-98FFCP PHASE1:Hg19::chr1:218214846..218214850,-#_284345d22cda2bdcf64430d9e57eebc0p@chr1:218214846..218214850, -
2.55e-98FFCP PHASE1:Hg19::chr7:103086717..103086724,+#_284345d22cda2bdcf64430d9e57eebc0p@chr7:103086717..103086724, +
2.55e-98FFCP PHASE1:Hg19::chr11:2435409..2435443,-#_284345d22cda2bdcf64430d9e57eebc0p@chr11:2435409..2435443, -
2.55e-98FFCP PHASE2:Hg19::chr2:97626726..97626741,+#_284345d22cda2bdcf64430d9e57eebc0p@chr2:97626726..97626741, +
2.55e-98FFCP PHASE2:Hg19::chr5:58471631..58471634,+#_284345d22cda2bdcf64430d9e57eebc0p@chr5:58471631..58471634, +
2.55e-98FFCP PHASE2:Hg19::chr1:7709325..7709329,+#_284345d22cda2bdcf64430d9e57eebc0p@chr1:7709325..7709329, +
2.55e-98FFCP PHASE1:Hg19::chr11:79291300..79291301,+#_284345d22cda2bdcf64430d9e57eebc0p@chr11:79291300..79291301, +
2.55e-98FFCP PHASE2:Hg19::chr22:30951607..30951613,-#_284345d22cda2bdcf64430d9e57eebc0p@chr22:30951607..30951613, -
2.55e-98FFCP PHASE1:Hg19::chr15:36402459..36402465,-#_284345d22cda2bdcf64430d9e57eebc0p@chr15:36402459..36402465, -
2.55e-98FFCP PHASE1:Hg19::chr14:85119696..85119699,+#_284345d22cda2bdcf64430d9e57eebc0p@chr14:85119696..85119699, +
2.55e-98FFCP PHASE1:Hg19::chr4:139590958..139590961,-#_284345d22cda2bdcf64430d9e57eebc0p@chr4:139590958..139590961, -
2.55e-98FFCP PHASE2:Hg19::chr9:79519652..79519664,-#_284345d22cda2bdcf64430d9e57eebc0p@chr9:79519652..79519664, -
2.55e-98FFCP PHASE1:Hg19::chr5:109466651..109466653,+#_284345d22cda2bdcf64430d9e57eebc0p@chr5:109466651..109466653, +
2.55e-98FFCP PHASE2:Hg19::chr10:37679189..37679193,+#_284345d22cda2bdcf64430d9e57eebc0p@chr10:37679189..37679193, +
2.55e-98FFCP PHASE1:Hg19::chr5:103200303..103200307,+#_284345d22cda2bdcf64430d9e57eebc0p@chr5:103200303..103200307, +
2.55e-98FFCP PHASE2:Hg19::chr3:27750995..27750997,-#_284345d22cda2bdcf64430d9e57eebc0p@chr3:27750995..27750997, -
2.55e-98FFCP PHASE1:Hg19::chr7:95704857..95704906,+#_284345d22cda2bdcf64430d9e57eebc0+, p@chr7:95704857..95704906
2.55e-98FFCP PHASE2:Hg19::chr8:133945378..133945386,+#_284345d22cda2bdcf64430d9e57eebc0p@chr8:133945378..133945386, +
2.55e-98FFCP PHASE2:Hg19::chr5:172318159..172318160,+#_284345d22cda2bdcf64430d9e57eebc0p@chr5:172318159..172318160, +
2.55e-98FFCP PHASE1:Hg19::chr21:45724075..45724081,+#_284345d22cda2bdcf64430d9e57eebc0p@chr21:45724075..45724081, +
2.55e-98FFCP PHASE1:Hg19::chr1:86911063..86911068,+#_284345d22cda2bdcf64430d9e57eebc0p@chr1:86911063..86911068, +
2.55e-98FFCP PHASE2:Hg19::chr6:168558338..168558388,-#_284345d22cda2bdcf64430d9e57eebc0p@chr6:168558338..168558388, -
2.55e-98FFCP PHASE2:Hg19::chr4:188536760..188536764,-#_284345d22cda2bdcf64430d9e57eebc0p@chr4:188536760..188536764, -
2.55e-98FFCP PHASE2:Hg19::chr1:86911063..86911068,+#_284345d22cda2bdcf64430d9e57eebc0p@chr1:86911063..86911068, +
2.55e-98FFCP PHASE1:Hg19::chr19:20382476..20382481,-#_284345d22cda2bdcf64430d9e57eebc0p@chr19:20382476..20382481, -
2.55e-98FFCP PHASE2:Hg19::chr2:133035182..133035195,-#_284345d22cda2bdcf64430d9e57eebc0p@chr2:133035182..133035195, -
2.55e-98FFCP PHASE1:Hg19::chr5:54763740..54763746,-#_284345d22cda2bdcf64430d9e57eebc0p10@PPAP2A
2.55e-98FFCP PHASE1:Hg19::chr8:90420477..90420478,-#_284345d22cda2bdcf64430d9e57eebc0p@chr8:90420477..90420478, -
2.55e-98FFCP PHASE1:Hg19::chr1:1413227..1413230,+#_284345d22cda2bdcf64430d9e57eebc0p2@ATAD3B
2.55e-98FFCP PHASE1:Hg19::chr4:188536760..188536764,-#_284345d22cda2bdcf64430d9e57eebc0p@chr4:188536760..188536764, -
2.55e-98FFCP PHASE2:Hg19::chr11:2435409..2435443,-#_284345d22cda2bdcf64430d9e57eebc0p@chr11:2435409..2435443, -
2.55e-98FFCP PHASE1:Hg19::chr14:68589926..68589929,+#_284345d22cda2bdcf64430d9e57eebc0p@chr14:68589926..68589929, +
2.55e-98FFCP PHASE1:Hg19::chr1:44991346..44991355,+#_284345d22cda2bdcf64430d9e57eebc0p@chr1:44991346..44991355, +
2.55e-98FFCP PHASE1:Hg19::chr11:20791058..20791067,+#_284345d22cda2bdcf64430d9e57eebc0p10@NELL1
2.55e-98FFCP PHASE1:Hg19::chr3:181328346..181328351,+#_284345d22cda2bdcf64430d9e57eebc0p22@SOX2-OT
2.55e-98FFCP PHASE1:Hg19::chr8:126163123..126163134,+#_284345d22cda2bdcf64430d9e57eebc0p@chr8:126163123..126163134, +
2.55e-98FFCP PHASE1:Hg19::chr6:16317123..16317126,+#_284345d22cda2bdcf64430d9e57eebc0p@chr6:16317123..16317126, +
2.55e-98FFCP PHASE1:Hg19::chr10:118927879..118927891,+#_284345d22cda2bdcf64430d9e57eebc0p@chr10:118927879..118927891, +