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UBERON:0005068

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Name:neural rod
Namespace:FANTOM
Definition:"a solid rod of neurectoderm derived from the neural keel. The neural rod is roughly circular in cross section. Neural rod formation occurs during primary neurulation in teleosts[GO]. An intermediate stage in the development of the central nervous system present during the segmentation period; the neural rod is roughly cylindrical in shape, forms from the neural keel, and is not yet hollowed out into the neural tube[ZFIN]." [GO:0014024, ZFA:0000133]
Xrefs:
links:

EFO:0003498
TAO:0000133

ZFA:0000133

Ontology association
Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.

link to ontology dataset
data


Parents

is_a:UBERON:0016879(future central nervous system)
develops_from:UBERON:0007135(neural keel)
part_of:UBERON:0000922(embryo)



Children

develops from:UBERON:0001049 (neural tube)

Ontology Tree: Loaded from BioPortal


FF samples
It includes FANTOM5 samples that overlay the Uberon ontology




Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0005068 (neural rod), sorted by p-values
Analyst: Hideya Kawaji

link to source dataset
human : data
mouse : data


P-valueFFCPShort description
9.5e-145FFCP PHASE1:Hg19::chr12:106976678..106976708,+#_23d573ed248cde2f100556f22aa3804ep2@RFX4
9.5e-145FFCP PHASE2:Hg19::chr12:106976678..106976708,+#_23d573ed248cde2f100556f22aa3804ep2@RFX4
4.41e-144FFCP PHASE1:Hg19::chr5:87439352..87439386,-#_b7d4f5f0361092816221d6f1ddb1a1d4p@chr5:87439352..87439386, -
4.41e-144FFCP PHASE2:Hg19::chr5:87439352..87439386,-#_b7d4f5f0361092816221d6f1ddb1a1d4p@chr5:87439352..87439386, -
5.06e-144FFCP PHASE1:Hg19::chr2:74612644..74612670,+#_2ccc850bbc21cdb12fbd59f35ba0eaaep1@ENST00000412957
5.06e-144FFCP PHASE2:Hg19::chr2:74612644..74612670,+#_2ccc850bbc21cdb12fbd59f35ba0eaaep1@ENST00000412957
1.1e-143FFCP PHASE2:Hg19::chr5:11588907..11588967,-#_357e842d159a347c18e30a367a599021p3@CTNND2
1.1e-143FFCP PHASE1:Hg19::chr5:11588907..11588967,-#_357e842d159a347c18e30a367a599021p3@CTNND2
1.17e-142FFCP PHASE1:Hg19::chr4:46126063..46126087,-#_4d1f0782576b77e22427afc808b922f7p2@GABRG1
1.17e-142FFCP PHASE2:Hg19::chr4:46126063..46126087,-#_4d1f0782576b77e22427afc808b922f7p2@GABRG1
2.68e-142FFCP PHASE1:Hg19::chr2:50201220..50201261,-#_b4e9fc97bf4d950be9f1198cd94b7245p3@NRXN1
2.68e-142FFCP PHASE2:Hg19::chr2:50201220..50201261,-#_b4e9fc97bf4d950be9f1198cd94b7245p3@NRXN1
1.04e-141FFCP PHASE1:Hg19::chr5:112074041..112074101,+#_cf2317d562151187f1d7caaceb3c4bb5p4@APC
1.04e-141FFCP PHASE2:Hg19::chr5:112074041..112074101,+#_cf2317d562151187f1d7caaceb3c4bb5p4@APC
1.18e-141FFCP PHASE2:Hg19::chr5:11384884..11384916,-#_ba05abb3985828bf7165dd418d48e757p8@CTNND2
1.18e-141FFCP PHASE1:Hg19::chr5:11384884..11384916,-#_ba05abb3985828bf7165dd418d48e757p8@CTNND2
7.98e-141FFCP PHASE2:Hg19::chr18:32398296..32398318,+#_d50a37c232455b053a2dcffe2fd90a04p7@DTNA
7.98e-141FFCP PHASE1:Hg19::chr18:32398296..32398318,+#_d50a37c232455b053a2dcffe2fd90a04p7@DTNA
1.0e-140FFCP PHASE1:Hg19::chr17:68101117..68101162,+#_8e8ca80a51c9023e14887e681399d289p2@KCNJ16
1.0e-140FFCP PHASE2:Hg19::chr17:68101117..68101162,+#_8e8ca80a51c9023e14887e681399d289p2@KCNJ16
2.58e-140FFCP PHASE2:Hg19::chr5:146314142..146314146,-#_debc94d0b6961e0778cb86a0066605dcp@chr5:146314142..146314146, -
2.58e-140FFCP PHASE1:Hg19::chr5:146314142..146314146,-#_debc94d0b6961e0778cb86a0066605dc-, p@chr5:146314142..146314146
1.46e-139FFCP PHASE2:Hg19::chr12:106976774..106976788,+#_34a60db80c7374229f6f0e589094063ep1@RFX4
1.46e-139FFCP PHASE1:Hg19::chr12:106976774..106976788,+#_34a60db80c7374229f6f0e589094063ep1@RFX4
9.16e-139FFCP PHASE1:Hg19::chr12:106976656..106976672,+#_99f9ec0ceb1abe46d250730d31b22ceap4@RFX4
9.16e-139FFCP PHASE2:Hg19::chr12:106976656..106976672,+#_99f9ec0ceb1abe46d250730d31b22ceap4@RFX4
1.47e-138FFCP PHASE1:Hg19::chr1:84630574..84630602,+#_0b05f49541a2927a77055de994e34d8ap9@PRKACB
1.47e-138FFCP PHASE2:Hg19::chr1:84630574..84630602,+#_0b05f49541a2927a77055de994e34d8ap9@PRKACB
4.62e-138FFCP PHASE2:Hg19::chr5:11386115..11386130,-#_23f4432fb834e9af2e9377f26ea304dfp2@CTNND2
4.62e-138FFCP PHASE1:Hg19::chr5:11386115..11386130,-#_23f4432fb834e9af2e9377f26ea304dfp2@CTNND2
1.71e-137FFCP PHASE2:Hg19::chr15:46702499..46702523,+#_961f445ef687d429e7622d3ca40c09b4p@chr15:46702499..46702523, +
1.71e-137FFCP PHASE1:Hg19::chr15:46702499..46702523,+#_961f445ef687d429e7622d3ca40c09b4p@chr15:46702499..46702523, +
5.75e-137FFCP PHASE2:Hg19::chr1:84630610..84630621,+#_610bb8d2ea6bdd19cd3913b7efc0c4f8p17@PRKACB
5.75e-137FFCP PHASE1:Hg19::chr1:84630610..84630621,+#_610bb8d2ea6bdd19cd3913b7efc0c4f8p17@PRKACB
6.55e-137FFCP PHASE2:Hg19::chr9:87283501..87283520,+#_09c9b693a53b86e4336c08d859bee7eep17@NTRK2
6.55e-137FFCP PHASE1:Hg19::chr9:87283501..87283520,+#_09c9b693a53b86e4336c08d859bee7eep17@NTRK2
8.93e-137FFCP PHASE2:Hg19::chr6:80131670..80131724,+#_aa3c9bd945ced562282502fcfe942085+, p@chr6:80131670..80131724
8.93e-137FFCP PHASE1:Hg19::chr6:80131670..80131724,+#_aa3c9bd945ced562282502fcfe942085p@chr6:80131670..80131724, +
2.51e-136FFCP PHASE1:Hg19::chr11:35441048..35441059,-#_89e3ab1cfba02d9e6707add2e64663c2p4@SLC1A2
2.51e-136FFCP PHASE2:Hg19::chr11:35441048..35441059,-#_89e3ab1cfba02d9e6707add2e64663c2p4@SLC1A2
2.84e-136FFCP PHASE1:Hg19::chr5:160279207..160279247,-#_b2f39fb21cacb489f17b780a09acad03p1@ATP10B
2.84e-136FFCP PHASE2:Hg19::chr5:160279207..160279247,-#_b2f39fb21cacb489f17b780a09acad03p1@ATP10B
3.14e-136FFCP PHASE1:Hg19::chr1:2005182..2005194,+#_610ddf882562e9c0dd24bc3e33f4c191p8@PRKCZ
3.14e-136FFCP PHASE2:Hg19::chr1:2005182..2005194,+#_610ddf882562e9c0dd24bc3e33f4c191p8@PRKCZ
4.26e-136FFCP PHASE2:Hg19::chrX:13835312..13835321,-#_726066f14073866f1c70f441798a6689p9@GPM6B
4.26e-136FFCP PHASE1:Hg19::chrX:13835312..13835321,-#_726066f14073866f1c70f441798a6689p9@GPM6B
5.24e-136FFCP PHASE2:Hg19::chr18:24443122..24443142,-#_78c547fa3822dd0e31325d03548e6e8fp5@AQP4
5.24e-136FFCP PHASE1:Hg19::chr18:24443122..24443142,-#_78c547fa3822dd0e31325d03548e6e8fp5@AQP4
5.54e-136FFCP PHASE2:Hg19::chr2:74612614..74612643,+#_67c67c723df3ea9c520ca35399b998f6p1@ENST00000418990, p1@ENST00000426715, p1@ENST00000427343
5.54e-136FFCP PHASE1:Hg19::chr2:74612614..74612643,+#_67c67c723df3ea9c520ca35399b998f6p1@ENST00000418990, p1@ENST00000426715, p1@ENST00000427343
9.78e-136FFCP PHASE1:Hg19::chr6:56716896..56716928,-#_93f22949b27e5985aafe6ab7797af660p8@DST
9.78e-136FFCP PHASE2:Hg19::chr6:56716896..56716928,-#_93f22949b27e5985aafe6ab7797af660p8@DST
1.52e-135FFCP PHASE2:Hg19::chr7:47420733..47420758,-#_d2314a3eb679f0c56a486db8f105a452-, p@chr7:47420733..47420758
1.52e-135FFCP PHASE1:Hg19::chr7:47420733..47420758,-#_d2314a3eb679f0c56a486db8f105a452-, p@chr7:47420733..47420758
2.32e-135FFCP PHASE1:Hg19::chr17:54230819..54230848,+#_3a61d74830ff1952e11c15a4ad59d549p1@ANKFN1
2.32e-135FFCP PHASE2:Hg19::chr17:54230819..54230848,+#_3a61d74830ff1952e11c15a4ad59d549p1@ANKFN1
3.21e-135FFCP PHASE2:Hg19::chr4:46126009..46126045,-#_f002f35eb4d523c91c26b6b7643affeap1@GABRG1
3.21e-135FFCP PHASE1:Hg19::chr4:46126009..46126045,-#_f002f35eb4d523c91c26b6b7643affeap1@GABRG1
5.25e-135FFCP PHASE2:Hg19::chr17:7558857..7558903,+#_dbdd7389c6529437cea7faaaba215bd4p@chr17:7558857..7558903, +
5.25e-135FFCP PHASE1:Hg19::chr17:7558857..7558903,+#_dbdd7389c6529437cea7faaaba215bd4p@chr17:7558857..7558903, +
8.03e-135FFCP PHASE1:Hg19::chr2:73286253..73286279,-#_e9d9ef711e43f3735e32454d2b6302c3p3@SFXN5
8.03e-135FFCP PHASE2:Hg19::chr2:73286253..73286279,-#_e9d9ef711e43f3735e32454d2b6302c3p3@SFXN5
1.91e-134FFCP PHASE1:Hg19::chr4:46126093..46126106,-#_68e3d076a3957590dd7385e4d399ad35p3@GABRG1
1.91e-134FFCP PHASE2:Hg19::chr4:46126093..46126106,-#_68e3d076a3957590dd7385e4d399ad35p3@GABRG1
2.97e-134FFCP PHASE1:Hg19::chr18:32398400..32398416,+#_ccd2384be8a635b8e3cf5d2a67388c1ap10@DTNA
2.97e-134FFCP PHASE2:Hg19::chr18:32398400..32398416,+#_ccd2384be8a635b8e3cf5d2a67388c1ap10@DTNA
4.25e-134FFCP PHASE2:Hg19::chr18:32398372..32398394,+#_336ace92a71c611d91889888dd747309p5@DTNA
4.25e-134FFCP PHASE1:Hg19::chr18:32398372..32398394,+#_336ace92a71c611d91889888dd747309p5@DTNA
4.84e-134FFCP PHASE1:Hg19::chr17:42989121..42989166,-#_987384af4e4fd8ff2a627eeb1a2ab85bp7@GFAP
4.84e-134FFCP PHASE2:Hg19::chr17:42989121..42989166,-#_987384af4e4fd8ff2a627eeb1a2ab85bp7@GFAP
5.15e-134FFCP PHASE1:Hg19::chr1:156217805..156217817,-#_33c6201aa54432b6a36f6b752c4d17a1p2@PAQR6
5.15e-134FFCP PHASE2:Hg19::chr1:156217805..156217817,-#_33c6201aa54432b6a36f6b752c4d17a1p2@PAQR6
1.37e-133FFCP PHASE2:Hg19::chr16:72459772..72459794,+#_00acd0d7fa075e04471f5bdd639a4c46p2@uc002fch.1
1.37e-133FFCP PHASE1:Hg19::chr16:72459772..72459794,+#_00acd0d7fa075e04471f5bdd639a4c46p2@uc002fch.1
1.42e-133FFCP PHASE1:Hg19::chr17:36760961..36760976,-#_a9c796f72c8d98f2a09e59a248e2944bp2@SRCIN1
1.42e-133FFCP PHASE2:Hg19::chr17:36760961..36760976,-#_a9c796f72c8d98f2a09e59a248e2944bp2@SRCIN1
1.45e-133FFCP PHASE1:Hg19::chr3:153838982..153839001,-#_0563ac877abef115b3b1baca99cb7562p4@ARHGEF26-AS1
1.45e-133FFCP PHASE2:Hg19::chr3:153838982..153839001,-#_0563ac877abef115b3b1baca99cb7562p4@ARHGEF26-AS1
2.38e-133FFCP PHASE2:Hg19::chr12:41221684..41221704,+#_e5452db34c28560978dded320e715358p5@CNTN1
2.38e-133FFCP PHASE1:Hg19::chr12:41221684..41221704,+#_e5452db34c28560978dded320e715358p5@CNTN1
2.91e-133FFCP PHASE1:Hg19::chr5:11384929..11384947,-#_f6e92ad9fa932fb83bff952837441bb6p15@CTNND2
2.91e-133FFCP PHASE2:Hg19::chr5:11384929..11384947,-#_f6e92ad9fa932fb83bff952837441bb6p15@CTNND2
3.31e-133FFCP PHASE2:Hg19::chr12:57980138..57980165,+#_f292dd7777513e44e28c0dbae4751e17p3@KIF5A
3.31e-133FFCP PHASE1:Hg19::chr12:57980138..57980165,+#_f292dd7777513e44e28c0dbae4751e17p3@KIF5A
3.45e-133FFCP PHASE1:Hg19::chr1:110082487..110082535,+#_d50452af7b1e63d10a1165581e4b039cp1@GPR61
3.45e-133FFCP PHASE2:Hg19::chr1:110082487..110082535,+#_d50452af7b1e63d10a1165581e4b039cp1@GPR61
1.11e-132FFCP PHASE2:Hg19::chr8:63161215..63161235,+#_97fa96589a2fc0e288ea2f92132fa9dcp5@NKAIN3
1.11e-132FFCP PHASE1:Hg19::chr8:63161215..63161235,+#_97fa96589a2fc0e288ea2f92132fa9dcp5@NKAIN3
1.25e-132FFCP PHASE1:Hg19::chr15:30261066..30261096,-#_8ebaf09cb41be44aedbda7c22de7359ep12@TJP1
1.25e-132FFCP PHASE2:Hg19::chr15:30261066..30261096,-#_8ebaf09cb41be44aedbda7c22de7359ep12@TJP1
1.94e-132FFCP PHASE1:Hg19::chr17:7560542..7560578,+#_bb6363dd697e684d7b706e6b02ad7b45p4@ATP1B2
1.94e-132FFCP PHASE2:Hg19::chr17:7560542..7560578,+#_bb6363dd697e684d7b706e6b02ad7b45p4@ATP1B2
2.17e-132FFCP PHASE1:Hg19::chr7:29519599..29519612,+#_5e56d0b2e9cc405533f9e2b6f7e20149p9@CHN2
2.17e-132FFCP PHASE2:Hg19::chr7:29519599..29519612,+#_5e56d0b2e9cc405533f9e2b6f7e20149p9@CHN2
2.85e-132FFCP PHASE1:Hg19::chr12:102060112..102060135,+#_b1383e3da8323006144196b2441b59efp4@MYBPC1
2.85e-132FFCP PHASE2:Hg19::chr12:102060112..102060135,+#_b1383e3da8323006144196b2441b59efp4@MYBPC1
3.19e-132FFCP PHASE2:Hg19::chr5:87437100..87437115,-#_7c08ca6be3583b12cd50d310777088cdp1@LOC100289347
3.19e-132FFCP PHASE1:Hg19::chr5:87437100..87437115,-#_7c08ca6be3583b12cd50d310777088cdp1@LOC100289347
4.04e-132FFCP PHASE1:Hg19::chr2:210526233..210526258,+#_c997819c226fb9ae381d00622716b85ep9@MAP2
4.04e-132FFCP PHASE2:Hg19::chr2:210526233..210526258,+#_c997819c226fb9ae381d00622716b85ep9@MAP2










Property "Property value" (as page type) with input value "UBPROP:0000001 "An intermediate stage in the development of the central nervous system present during the segmentation period; the neural rod is roughly cylindrical in shape, forms from the neural keel, and is not yet hollowed out into the neural tube. Kimmel et al, 1995.[TAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.