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UBERON:0005281

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Name:ventricular system of central nervous system
Namespace:FANTOM
Definition:"a set of structures containing cerebrospinal fluid in the brain. It is continuous with the central canal of the spinal cord." [Wikipedia:Ventricular_system]
Xrefs:
links:

EFO:0003650
EHDAA2:0004362
EV:0100306
FMA:242675
[ Gray734.png Gray734.png]
[ 200px-Gray734.png 200px-Gray734.png]
TAO:0001261

ZFA:0001261
Synonyms: "ventricular system" EXACT [ZFA:0001261]
"ventricular system of neuraxis" EXACT [FMA:242675]
Subset: vertebrate_core

Ontology association
Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.

link to ontology dataset
data


Parents

is_a:UBERON:0000467(anatomical system),UBERON:0004121(ectoderm-derived structure)
part_of:UBERON:0001017(central nervous system)



Children

part of:UBERON:0005282 (ventricular system of brain),UBERON:0013150 (future brain vesicle)

Ontology Tree: Loaded from BioPortal


FF samples
It includes FANTOM5 samples that overlay the Uberon ontology


Human (Homo sapiens)


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0005281 (ventricular system of central nervous system), sorted by p-values
Analyst: Hideya Kawaji

link to source dataset
human : data
mouse : data


P-valueFFCPShort description
3.29e-195FFCP PHASE2:Hg19::chr1:201708485..201708494,+#_3741cb8aee2f3b69597dfda9491ee555p55@NAV1
3.29e-195FFCP PHASE1:Hg19::chr1:201708485..201708494,+#_3741cb8aee2f3b69597dfda9491ee555p55@NAV1
3.29e-195FFCP PHASE2:Hg19::chr1:201708474..201708479,+#_3741cb8aee2f3b69597dfda9491ee555p58@NAV1
3.29e-195FFCP PHASE1:Hg19::chr1:201708474..201708479,+#_3741cb8aee2f3b69597dfda9491ee555p58@NAV1
8.99e-131FFCP PHASE1:Hg19::chr8:24997361..24997368,-#_93b24e18d1e343beb7cc5bbb53b48fc5p@chr8:24997361..24997368, -
8.99e-131FFCP PHASE2:Hg19::chr8:24997361..24997368,-#_93b24e18d1e343beb7cc5bbb53b48fc5p@chr8:24997361..24997368, -
3.96e-66FFCP PHASE2:Hg19::chr3:146517344..146517356,+#_b48fd2ca66e6eeb8175c562753cc824bp@chr3:146517344..146517356, +
3.96e-66FFCP PHASE2:Hg19::chr17:75471711..75471726,+#_b48fd2ca66e6eeb8175c562753cc824bp73@SEPT9
3.96e-66FFCP PHASE1:Hg19::chr17:75471711..75471726,+#_b48fd2ca66e6eeb8175c562753cc824bp73@SEPT9
3.96e-66FFCP PHASE1:Hg19::chr3:146517344..146517356,+#_b48fd2ca66e6eeb8175c562753cc824bp@chr3:146517344..146517356, +
4.77e-57FFCP PHASE1:Hg19::chr12:15941738..15941768,+#_761f28eebca0e3a42f39ce4365c80c5dp@chr12:15941738..15941768, +
4.77e-57FFCP PHASE2:Hg19::chr12:15941738..15941768,+#_761f28eebca0e3a42f39ce4365c80c5dp@chr12:15941738..15941768, +
6.36e-57FFCP PHASE2:Hg19::chr5:149537789..149537803,-#_071012f63db5077158ee580037c09b43p@chr5:149537789..149537803, -
6.36e-57FFCP PHASE1:Hg19::chr5:149537789..149537803,-#_071012f63db5077158ee580037c09b43p@chr5:149537789..149537803, -
8.82e-51FFCP PHASE2:Hg19::chr14:76072096..76072107,+#_663482a148772dd91003d7ef48796a87p7@FLVCR2
8.82e-51FFCP PHASE1:Hg19::chr10:105677427..105677438,-#_663482a148772dd91003d7ef48796a87p7@OBFC1
8.82e-51FFCP PHASE2:Hg19::chr10:105677427..105677438,-#_663482a148772dd91003d7ef48796a87p7@OBFC1
8.82e-51FFCP PHASE1:Hg19::chr14:76072096..76072107,+#_663482a148772dd91003d7ef48796a87p7@FLVCR2
5.15e-50FFCP PHASE2:Hg19::chr16:65159735..65159744,-#_8e625d227aa525ef4a846aadaff9fbcbp@chr16:65159735..65159744, -
5.15e-50FFCP PHASE1:Hg19::chr16:65159735..65159744,-#_8e625d227aa525ef4a846aadaff9fbcbp@chr16:65159735..65159744, -
1.22e-44FFCP PHASE1:Hg19::chr5:158523468..158523481,-#_eaebbed70e7658f58847860f467e1e2ap20@EBF1
1.22e-44FFCP PHASE2:Hg19::chr5:158523468..158523481,-#_eaebbed70e7658f58847860f467e1e2ap20@EBF1
1.53e-44FFCP PHASE2:Hg19::chr11:60680190..60680212,+#_29c2016a82f8557226818f50360e846fp@chr11:60680190..60680212, +
1.53e-44FFCP PHASE1:Hg19::chr11:60680190..60680212,+#_29c2016a82f8557226818f50360e846fp@chr11:60680190..60680212, +
5.99e-41FFCP PHASE2:Hg19::chr9:132390755..132390781,+#_aafc4678a1d288ddbad5e23e064ca2e3p7@METTL11A
5.99e-41FFCP PHASE1:Hg19::chr9:132390755..132390781,+#_aafc4678a1d288ddbad5e23e064ca2e3p7@METTL11A
8.98e-41FFCP PHASE2:Hg19::chr1:19778678..19778689,-#_b0301d1a254ca2994aa5ab61e8e018b8-, p@chr1:19778678..19778689
8.98e-41FFCP PHASE1:Hg19::chr1:19778678..19778689,-#_b0301d1a254ca2994aa5ab61e8e018b8p@chr1:19778678..19778689, -
1.34e-40FFCP PHASE1:Hg19::chr4:111397216..111397250,+#_d8cdbaf6456fc2287cfb01d0962b7e75p8@ENPEP
1.34e-40FFCP PHASE2:Hg19::chr4:111397216..111397250,+#_d8cdbaf6456fc2287cfb01d0962b7e75p8@ENPEP
9.84e-37FFCP PHASE2:Hg19::chr11:44331735..44331747,-#_0cfffbd741f0121617d6a9f92cb554ccp3@ALX4
9.84e-37FFCP PHASE1:Hg19::chr11:44331735..44331747,-#_0cfffbd741f0121617d6a9f92cb554ccp3@ALX4
1.18e-36FFCP PHASE1:Hg19::chr1:236203048..236203055,-#_57d1e74025e8095242a90e3473de9052p@chr1:236203048..236203055, -
1.18e-36FFCP PHASE2:Hg19::chr1:236203048..236203055,-#_57d1e74025e8095242a90e3473de9052p@chr1:236203048..236203055, -
1.42e-36FFCP PHASE1:Hg19::chr6:72970377..72970387,+#_69bb1a7afaa3f33cc8fc609be64c8034p20@RIMS1
1.42e-36FFCP PHASE2:Hg19::chr6:72970377..72970387,+#_69bb1a7afaa3f33cc8fc609be64c8034p20@RIMS1
1.7e-36FFCP PHASE1:Hg19::chr14:87636652..87636657,-#_fabfec2b9c4b33367acade50b95629c7p@chr14:87636652..87636657, -
1.7e-36FFCP PHASE2:Hg19::chr14:87636652..87636657,-#_fabfec2b9c4b33367acade50b95629c7p@chr14:87636652..87636657, -
2.04e-36FFCP PHASE1:Hg19::chr14:61654271..61654282,+#_64f0f95c3e2592166233cc62b506bc46p30@PRKCH
2.04e-36FFCP PHASE2:Hg19::chr14:61654271..61654282,+#_64f0f95c3e2592166233cc62b506bc46p30@PRKCH
1.11e-34FFCP PHASE2:Hg19::chr12:108732917..108732935,-#_f2add0d5381592a5f6fc29e446f0bfb2p5@CMKLR1
1.11e-34FFCP PHASE1:Hg19::chr12:108732917..108732935,-#_f2add0d5381592a5f6fc29e446f0bfb2p5@CMKLR1
5.04e-34FFCP PHASE2:Hg19::chr9:130830760..130830783,+#_e7f5b1efc657a79a1aa51b2bcca21568p11@SLC25A25
5.04e-34FFCP PHASE1:Hg19::chr9:130830760..130830783,+#_e7f5b1efc657a79a1aa51b2bcca21568p11@SLC25A25
7.05e-34FFCP PHASE2:Hg19::chr2:231988425..231988433,-#_8ddb6ce5ca52a42331ff6bb35558db67p11@HTR2B
7.05e-34FFCP PHASE1:Hg19::chr8:128902610..128902630,+#_8ddb6ce5ca52a42331ff6bb35558db67p17@PVT1
7.05e-34FFCP PHASE2:Hg19::chr8:128902610..128902630,+#_8ddb6ce5ca52a42331ff6bb35558db67p17@PVT1
7.05e-34FFCP PHASE1:Hg19::chr6:36906253..36906260,-#_8ddb6ce5ca52a42331ff6bb35558db67p@chr6:36906253..36906260, -
7.05e-34FFCP PHASE1:Hg19::chr2:231988425..231988433,-#_8ddb6ce5ca52a42331ff6bb35558db67p11@HTR2B
7.05e-34FFCP PHASE2:Hg19::chr15:95869480..95869493,+#_8ddb6ce5ca52a42331ff6bb35558db67p@chr15:95869480..95869493, +
7.05e-34FFCP PHASE2:Hg19::chr6:36906253..36906260,-#_8ddb6ce5ca52a42331ff6bb35558db67p@chr6:36906253..36906260, -
7.05e-34FFCP PHASE1:Hg19::chr15:95869480..95869493,+#_8ddb6ce5ca52a42331ff6bb35558db67p@chr15:95869480..95869493, +
1.37e-31FFCP PHASE2:Hg19::chr2:223536233..223536234,+#_8a42b8b7ac1a3c0548343dca3b8ad372p3@MOGAT1
1.37e-31FFCP PHASE1:Hg19::chr2:223536233..223536234,+#_8a42b8b7ac1a3c0548343dca3b8ad372p3@MOGAT1
4.71e-31FFCP PHASE1:Hg19::chr5:134260455..134260471,-#_f6c6ce062d06c5e1a37cc1c0ab89dbd6p@chr5:134260455..134260471, -
4.71e-31FFCP PHASE2:Hg19::chr5:134260455..134260471,-#_f6c6ce062d06c5e1a37cc1c0ab89dbd6-, p@chr5:134260455..134260471
4.71e-31FFCP PHASE1:Hg19::chr3:147127961..147127972,+#_f6c6ce062d06c5e1a37cc1c0ab89dbd6p3@AB464362
4.71e-31FFCP PHASE2:Hg19::chr3:147127961..147127972,+#_f6c6ce062d06c5e1a37cc1c0ab89dbd6p3@AB464362
6.96e-30FFCP PHASE2:Hg19::chr16:65159902..65159909,-#_0be7bad9a53beccc9bb841fb0043667fp@chr16:65159902..65159909, -
6.96e-30FFCP PHASE1:Hg19::chr16:65159902..65159909,-#_0be7bad9a53beccc9bb841fb0043667fp@chr16:65159902..65159909, -
1.08e-29FFCP PHASE2:Hg19::chr5:149537807..149537827,-#_483116e6f39bcf5b28a8a513790921b3p@chr5:149537807..149537827, -
1.08e-29FFCP PHASE1:Hg19::chr5:149537807..149537827,-#_483116e6f39bcf5b28a8a513790921b3p@chr5:149537807..149537827, -
9.09e-27FFCP PHASE1:Hg19::chr3:147124547..147124563,-#_b124b6599e6a9fc6434d8f39117d9f6ap6@ZIC4
9.09e-27FFCP PHASE2:Hg19::chr3:147124547..147124563,-#_b124b6599e6a9fc6434d8f39117d9f6ap6@ZIC4
1.67e-26FFCP PHASE1:Hg19::chr2:238066183..238066194,-#_c52c5b0cbb9f9db9a151c8d74a898e73p@chr2:238066183..238066194, -
1.67e-26FFCP PHASE2:Hg19::chr2:238066183..238066194,-#_c52c5b0cbb9f9db9a151c8d74a898e73p@chr2:238066183..238066194, -
4.08e-26FFCP PHASE2:Hg19::chr5:40910094..40910097,+#_fa0e3e87cb63b32e09a4706bba91703ap@chr5:40910094..40910097, +
4.08e-26FFCP PHASE1:Hg19::chr5:40910094..40910097,+#_fa0e3e87cb63b32e09a4706bba91703ap@chr5:40910094..40910097, +
5.56e-26FFCP PHASE2:Hg19::chr11:61634768..61634777,+#_49e2b8788d6d6dbe3f264704de8cab27p@chr11:61634768..61634777, +
5.56e-26FFCP PHASE1:Hg19::chr11:61634768..61634777,+#_49e2b8788d6d6dbe3f264704de8cab27p@chr11:61634768..61634777, +
7.14e-26FFCP PHASE1:Hg19::chr8:58658778..58658788,+#_3d345c373eee9711e4f31e47881677bcp2@ENST00000518934, p2@uc003xti.1
7.14e-26FFCP PHASE2:Hg19::chr8:58658778..58658788,+#_3d345c373eee9711e4f31e47881677bcp2@ENST00000518934, p2@uc003xti.1
9.18e-26FFCP PHASE2:Hg19::chr6:129504885..129504896,-#_ebcba8c3438d6828f27abf8fc1fcefccp@chr6:129504885..129504896, -
9.18e-26FFCP PHASE1:Hg19::chr6:129504885..129504896,-#_ebcba8c3438d6828f27abf8fc1fcefccp@chr6:129504885..129504896, -
1.44e-25FFCP PHASE2:Hg19::chr3:147127358..147127369,+#_11aec04f87425957a88a744f0c6b24b8p16@ZIC1
1.44e-25FFCP PHASE2:Hg19::chr12:279773..279812,+#_11aec04f87425957a88a744f0c6b24b8p@chr12:279773..279812, +
1.44e-25FFCP PHASE1:Hg19::chr12:279773..279812,+#_11aec04f87425957a88a744f0c6b24b8+, p@chr12:279773..279812
1.44e-25FFCP PHASE1:Hg19::chr3:147127358..147127369,+#_11aec04f87425957a88a744f0c6b24b8p16@ZIC1
2.37e-25FFCP PHASE1:Hg19::chr3:147112699..147112713,-#_a934675208ab70ad73a579e955377373p@chr3:147112699..147112713, -
2.37e-25FFCP PHASE2:Hg19::chr3:147112699..147112713,-#_a934675208ab70ad73a579e955377373p@chr3:147112699..147112713, -
1.15e-24FFCP PHASE2:Hg19::chr1:47903765..47903783,+#_db7978b4ca6d5985be63c0abdfc52459p5@FOXD2
1.15e-24FFCP PHASE1:Hg19::chr1:47903765..47903783,+#_db7978b4ca6d5985be63c0abdfc52459p5@FOXD2
1.45e-24FFCP PHASE1:Hg19::chr9:16138889..16138902,-#_4728fbf1cb0ff564aa21b08ab6584f46p@chr9:16138889..16138902, -
1.45e-24FFCP PHASE2:Hg19::chr9:16138889..16138902,-#_4728fbf1cb0ff564aa21b08ab6584f46p@chr9:16138889..16138902, -
2.97e-24FFCP PHASE2:Hg19::chr2:192128035..192128057,+#_b5a650a0cd218f102ef2a30765fab4b7p6@MYO1B
2.97e-24FFCP PHASE1:Hg19::chr2:192128035..192128057,+#_b5a650a0cd218f102ef2a30765fab4b7p6@MYO1B
3.34e-24FFCP PHASE1:Hg19::chr3:147088197..147088208,-#_33eb300dc80457677f46ad35843b178bp@chr3:147088197..147088208, -
3.34e-24FFCP PHASE2:Hg19::chr3:147088197..147088208,-#_33eb300dc80457677f46ad35843b178bp@chr3:147088197..147088208, -
5.35e-24FFCP PHASE1:Hg19::chr17:1013251..1013277,-#_1ae99e2927b544d0752e227dff9385a7p@chr17:1013251..1013277, -
5.35e-24FFCP PHASE2:Hg19::chr17:1013251..1013277,-#_1ae99e2927b544d0752e227dff9385a7p@chr17:1013251..1013277, -
1.01e-23FFCP PHASE2:Hg19::chr11:60640905..60640919,+#_76ef44802de1d249d62edd5d46d4cdc2p@chr11:60640905..60640919, +
1.01e-23FFCP PHASE1:Hg19::chr11:60640905..60640919,+#_76ef44802de1d249d62edd5d46d4cdc2p@chr11:60640905..60640919, +
1.42e-23FFCP PHASE2:Hg19::chr17:75446774..75446783,+#_519143a6905cde5a7a7af5f3f631a50ap49@SEPT9
1.42e-23FFCP PHASE1:Hg19::chr17:75446774..75446783,+#_519143a6905cde5a7a7af5f3f631a50ap49@SEPT9
3.49e-23FFCP PHASE2:Hg19::chr11:8832119..8832124,-#_405eeeffaf131cc77dbfe503cf59f2f2p30@ST5
3.49e-23FFCP PHASE1:Hg19::chr11:8832119..8832124,-#_405eeeffaf131cc77dbfe503cf59f2f2p30@ST5
6.84e-23FFCP PHASE2:Hg19::chr6:55739244..55739256,-#_8a15131ecdcbaa77eec684e833253bf8p2@AB527577, p2@CU693346
6.84e-23FFCP PHASE1:Hg19::chr6:55739244..55739256,-#_8a15131ecdcbaa77eec684e833253bf8p2@AB527577, p2@CU693346
2.06e-22FFCP PHASE2:Hg19::chr11:60610073..60610090,+#_afd875dc653f3aa1d2ea62f659caeec5p6@CCDC86
2.06e-22FFCP PHASE1:Hg19::chr11:60610073..60610090,+#_afd875dc653f3aa1d2ea62f659caeec5p6@CCDC86