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UBERON:0005417

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Name:forelimb bud
Namespace:FANTOM
Definition:"A limb bud that develops into a forelimb." [OBOL:automatic]
Xrefs:
links:

AAO:0010381
BTO:0001645
EHDAA:1699
EMAPA:16406
MIAA:0000065
RETIRED_EHDAA2:0003198
SCTID:346062002

XAO:0003065
Synonyms: "anterior limb bud" EXACT [SCTID:346062002]
"arm bud" RELATED []
"limb bud - forelimb" EXACT [MIAA:0000065]
"upper limb bud" EXACT [RETIRED_EHDAA2:0003198]
Comments:Genes: Tbx5 specifies forelimbs. Wnt2b restricts Fgf10 in chick // In tetrapods, the position of the forelimb is associated with the anterior expression border of Hoxc6 in the paraxial mesoderm (Burke et al., 1995)

Ontology association
Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.

link to ontology dataset
data


Parents

is_a:UBERON:0004347(limb bud),UBERON:0005419(pectoral appendage bud)
part_of:UBERON:0000153(anterior region of body)



Children

develops from:UBERON:0002102 (forelimb),UBERON:0006875 (handplate)

Ontology Tree: Loaded from BioPortal


FF samples
It includes FANTOM5 samples that overlay the Uberon ontology




Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0005417 (forelimb bud), sorted by p-values
Analyst: Hideya Kawaji

link to source dataset
human : data
mouse : data


P-valueFFCPShort description
1.33e-86FFCP PHASE1:Mm9::chr2:74499300..74499309,-#_00ae87636e4bef7131a71dc9cd288d8ep5@Evx2
1.33e-86FFCP PHASE2:Mm9::chr2:74499300..74499309,-#_00ae87636e4bef7131a71dc9cd288d8ep5@Evx2
2.4e-74FFCP PHASE2:Mm9::chr2:165983686..165983720,-#_2b481d477bf4078e924745ae6712cfcbp@chr2:165983686..165983720, -
2.4e-74FFCP PHASE2:Mm9::chr15:51484092..51484121,-#_2b481d477bf4078e924745ae6712cfcbp@chr15:51484092..51484121, -
2.4e-74FFCP PHASE1:Mm9::chr5:120256413..120256428,-#_2b481d477bf4078e924745ae6712cfcbp@chr5:120256413..120256428, -
2.4e-74FFCP PHASE1:Mm9::chr15:51484092..51484121,-#_2b481d477bf4078e924745ae6712cfcbp@chr15:51484092..51484121, -
2.4e-74FFCP PHASE1:Mm9::chr2:165983686..165983720,-#_2b481d477bf4078e924745ae6712cfcb-, p@chr2:165983686..165983720
2.4e-74FFCP PHASE2:Mm9::chr5:120256413..120256428,-#_2b481d477bf4078e924745ae6712cfcbp@chr5:120256413..120256428, -
1.21e-61FFCP PHASE2:Mm9::chr2:74505324..74505330,+#_2e246b3f33e1018ca7fc15c6ec7896c7p@chr2:74505324..74505330, +
1.21e-61FFCP PHASE1:Mm9::chr2:74505324..74505330,+#_2e246b3f33e1018ca7fc15c6ec7896c7p@chr2:74505324..74505330, +
2.24e-61FFCP PHASE1:Mm9::chr2:74506264..74506286,+#_2533b71e470aed6ccf5e0ce6c07696d9p1@Hoxd13
2.24e-61FFCP PHASE2:Mm9::chr2:74506264..74506286,+#_2533b71e470aed6ccf5e0ce6c07696d9p1@Hoxd13
3.63e-52FFCP PHASE1:Mm9::chr2:74513064..74513089,+#_52882c3cffc75128d952c727f06a3478p2@Hoxd12
3.63e-52FFCP PHASE2:Mm9::chr2:74513064..74513089,+#_52882c3cffc75128d952c727f06a3478p2@Hoxd12
4.62e-52FFCP PHASE1:Mm9::chr2:74499251..74499258,-#_279888b147edc64653034fbe133c8114p4@Evx2
4.62e-52FFCP PHASE2:Mm9::chr2:74499251..74499258,-#_279888b147edc64653034fbe133c8114p4@Evx2
5.88e-52FFCP PHASE1:Mm9::chr2:33574246..33574257,-#_af10d7c93676a9cc07bf80afff5e5fbap3@ENSMUST00000130532
5.88e-52FFCP PHASE2:Mm9::chr2:33574246..33574257,-#_af10d7c93676a9cc07bf80afff5e5fbap3@ENSMUST00000130532
5.28e-50FFCP PHASE2:Mm9::chr2:74521516..74521525,+#_98af18f45340e1af138d62d733490228p1@ENSMUST00000136302
5.28e-50FFCP PHASE1:Mm9::chr2:74521516..74521525,+#_98af18f45340e1af138d62d733490228p1@ENSMUST00000136302
9.21e-50FFCP PHASE2:Mm9::chr6:51009701..51009744,-#_b4446739737ee4f054199b6bea046cb0p@chr6:51009701..51009744, -
9.21e-50FFCP PHASE1:Mm9::chr6:51009701..51009744,-#_b4446739737ee4f054199b6bea046cb0p@chr6:51009701..51009744, -
2.92e-48FFCP PHASE1:Mm9::chr10:97069737..97069749,+#_e39ae7fa3f8129ba9f895e9e17967517p5@Kera
2.92e-48FFCP PHASE2:Mm9::chr10:97069737..97069749,+#_e39ae7fa3f8129ba9f895e9e17967517p5@Kera
4.71e-48FFCP PHASE2:Mm9::chr6:52210816..52210831,-#_f1b4938fe2e65174ce01a7e9ab4986e1p2@Hoxa13
4.71e-48FFCP PHASE1:Mm9::chr6:52210816..52210831,-#_f1b4938fe2e65174ce01a7e9ab4986e1p2@Hoxa13
6.47e-48FFCP PHASE1:Mm9::chr2:74513149..74513159,+#_ee61b1965569e7a88af57e9aa53a5fcdp@chr2:74513149..74513159, +
6.47e-48FFCP PHASE2:Mm9::chr2:74513149..74513159,+#_ee61b1965569e7a88af57e9aa53a5fcdp@chr2:74513149..74513159, +
1.4e-44FFCP PHASE1:Mm9::chr1:165288513..165288518,+#_2c0a18a4d3c23223124fd51aabc23dbbp@chr1:165288513..165288518, +
1.4e-44FFCP PHASE2:Mm9::chr1:165288513..165288518,+#_2c0a18a4d3c23223124fd51aabc23dbbp@chr1:165288513..165288518, +
2.07e-41FFCP PHASE2:Mm9::chr1:164064835..164064864,-#_5bd04f9900f6ba72c843da848395561ep3@Dnm3
2.07e-41FFCP PHASE1:Mm9::chr1:164064835..164064864,-#_5bd04f9900f6ba72c843da848395561ep3@Dnm3
2.91e-40FFCP PHASE2:Mm9::chr2:33574267..33574279,-#_b01d5eae997b51818713b157556397c1p1@ENSMUST00000130532
2.91e-40FFCP PHASE1:Mm9::chr2:33574267..33574279,-#_b01d5eae997b51818713b157556397c1p1@ENSMUST00000130532
3.67e-40FFCP PHASE1:Mm9::chr2:33574309..33574319,-#_0c3b9399c77c8a46e0b517c604cb63eap4@ENSMUST00000130532
3.67e-40FFCP PHASE2:Mm9::chr2:33574309..33574319,-#_0c3b9399c77c8a46e0b517c604cb63eap4@ENSMUST00000130532
5.46e-39FFCP PHASE2:Mm9::chr6:52195000..52195013,+#_68a70ad4b977facdb76d98fc3b80d6dbp3@Hoxa11as
5.46e-39FFCP PHASE1:Mm9::chr6:52195000..52195013,+#_68a70ad4b977facdb76d98fc3b80d6dbp3@Hoxa11as
6.59e-38FFCP PHASE1:Mm9::chr2:74512009..74512012,+#_c0c8f5a60fe8049fb445bc078692cffb+, p@chr2:74512009..74512012
6.59e-38FFCP PHASE2:Mm9::chr2:74512009..74512012,+#_c0c8f5a60fe8049fb445bc078692cffbp@chr2:74512009..74512012, +
1.94e-35FFCP PHASE1:Mm9::chr2:33496847..33496857,+#_aa23779a424c67b17e07aa81b44adb08p3@ENSMUST00000147294, p3@uc008jia.1
1.94e-35FFCP PHASE2:Mm9::chr2:33496847..33496857,+#_aa23779a424c67b17e07aa81b44adb08p3@ENSMUST00000147294, p3@uc008jia.1
9.74e-35FFCP PHASE1:Mm9::chr13:89680110..89680115,+#_518ad2a43b7443c8d63fa5a76f3ae209p6@Hapln1
9.74e-35FFCP PHASE2:Mm9::chr13:89680110..89680115,+#_518ad2a43b7443c8d63fa5a76f3ae209p6@Hapln1
2.95e-34FFCP PHASE2:Mm9::chr9:96754986..96754989,-#_943fa648a1e050fdb0da52ec7ba3404ap3@Acpl2
2.95e-34FFCP PHASE1:Mm9::chr9:96754986..96754989,-#_943fa648a1e050fdb0da52ec7ba3404ap3@Acpl2
6.28e-34FFCP PHASE1:Mm9::chr8:23734491..23734495,+#_243c8e14f0821a9fb899f99a4d4160c0p1@Dkk4
6.28e-34FFCP PHASE2:Mm9::chr8:23734491..23734495,+#_243c8e14f0821a9fb899f99a4d4160c0p1@Dkk4
7.62e-34FFCP PHASE1:Mm9::chr2:155770985..155770995,-#_906eecf66624cc3d11166710454a5182p2@Gdf5
7.62e-34FFCP PHASE2:Mm9::chr2:155770985..155770995,-#_906eecf66624cc3d11166710454a5182p2@Gdf5
2.0e-33FFCP PHASE2:Mm9::chr18:80910310..80910329,-#_78cf551a948c59da76d8d14c118ba58dp@chr18:80910310..80910329, -
2.0e-33FFCP PHASE1:Mm9::chr18:80910310..80910329,-#_78cf551a948c59da76d8d14c118ba58dp@chr18:80910310..80910329, -
1.89e-32FFCP PHASE1:Mm9::chr6:52210774..52210787,-#_e248c4babbc11318490bc1fedd801eebp1@Hoxa13
1.89e-32FFCP PHASE2:Mm9::chr6:52210774..52210787,-#_e248c4babbc11318490bc1fedd801eebp1@Hoxa13
6.43e-32FFCP PHASE2:Mm9::chr2:33498116..33498124,+#_f4c3c66218127ce1719752da2725b401p@chr2:33498116..33498124, +
6.43e-32FFCP PHASE1:Mm9::chr2:33498116..33498124,+#_f4c3c66218127ce1719752da2725b401p@chr2:33498116..33498124, +
7.44e-32FFCP PHASE2:Mm9::chr2:33496574..33496588,+#_174865c7c91775b4277ff6e869cc6fb9p4@ENSMUST00000152118, p4@uc008jhz.1
7.44e-32FFCP PHASE1:Mm9::chr2:33496574..33496588,+#_174865c7c91775b4277ff6e869cc6fb9p4@ENSMUST00000152118, p4@uc008jhz.1
1.09e-30FFCP PHASE2:Mm9::chr2:74520075..74520087,+#_44e24d8c2af157c7c4f420512d2e895ap6@Hoxd11
1.09e-30FFCP PHASE1:Mm9::chr2:74520075..74520087,+#_44e24d8c2af157c7c4f420512d2e895ap6@Hoxd11
2.22e-30FFCP PHASE2:Mm9::chr12:34649201..34649205,+#_e3a91f29d2e9555b801bb8af79a892a4+, p@chr12:34649201..34649205
2.22e-30FFCP PHASE1:Mm9::chr12:34649201..34649205,+#_e3a91f29d2e9555b801bb8af79a892a4p@chr12:34649201..34649205, +
1.6e-29FFCP PHASE2:Mm9::chr5:120285104..120285113,+#_831b4afdcf523f9665475fae09e42f33p5@Tbx5
1.6e-29FFCP PHASE1:Mm9::chr5:120285104..120285113,+#_831b4afdcf523f9665475fae09e42f33p5@Tbx5
4.13e-29FFCP PHASE2:Mm9::chr5:120246556..120246565,+#_988a3843adfe064de70d51868cd5b949p@chr5:120246556..120246565, +
4.13e-29FFCP PHASE1:Mm9::chr5:120246556..120246565,+#_988a3843adfe064de70d51868cd5b949p@chr5:120246556..120246565, +
4.91e-29FFCP PHASE2:Mm9::chr5:120246522..120246553,+#_91641178b9511d3a783edc4530866949p@chr5:120246522..120246553, +
4.91e-29FFCP PHASE1:Mm9::chr5:120246522..120246553,+#_91641178b9511d3a783edc4530866949p@chr5:120246522..120246553, +
5.59e-29FFCP PHASE2:Mm9::chr16:77329743..77329754,+#_15a5e9edf742480f2915f00b37d1bf3ap14@2810055G20Rik
5.59e-29FFCP PHASE1:Mm9::chr16:77329743..77329754,+#_15a5e9edf742480f2915f00b37d1bf3ap14@2810055G20Rik
8.27e-29FFCP PHASE2:Mm9::chr3:29912310..29912321,-#_f8da50b319c710d39e4a0ca52c8c497dp23@Mecom
8.27e-29FFCP PHASE1:Mm9::chr3:29912310..29912321,-#_f8da50b319c710d39e4a0ca52c8c497dp23@Mecom
6.5e-28FFCP PHASE1:Mm9::chr3:99044251..99044260,+#_9172b8675594d3d982dbd9715a814afcp8@Tbx15
6.5e-28FFCP PHASE2:Mm9::chr3:99044251..99044260,+#_9172b8675594d3d982dbd9715a814afcp8@Tbx15
3.95e-27FFCP PHASE2:Mm9::chr15:97807283..97807309,-#_4a9592b15003facb29ffb4902827e69bp@chr15:97807283..97807309, -
3.95e-27FFCP PHASE1:Mm9::chr15:97807283..97807309,-#_4a9592b15003facb29ffb4902827e69bp@chr15:97807283..97807309, -
5.23e-27FFCP PHASE2:Mm9::chr1:165244244..165244254,-#_5a2fd55f6223a2f948928e0a7a3da03fp8@Prrx1
5.23e-27FFCP PHASE1:Mm9::chr1:165244244..165244254,-#_5a2fd55f6223a2f948928e0a7a3da03fp8@Prrx1
1.4e-26FFCP PHASE1:Mm9::chr5:42155277..42155281,-#_946e4f14fe623130bbf1d48c7cac8a92p2@Nkx3-2
1.4e-26FFCP PHASE2:Mm9::chr5:42155277..42155281,-#_946e4f14fe623130bbf1d48c7cac8a92p2@Nkx3-2
1.64e-26FFCP PHASE1:Mm9::chr16:95807232..95807250,-#_f0fea071efa9da833f2fda8c462f42b7p@chr16:95807232..95807250, -
1.64e-26FFCP PHASE2:Mm9::chr16:95807232..95807250,-#_f0fea071efa9da833f2fda8c462f42b7p@chr16:95807232..95807250, -
7.57e-26FFCP PHASE1:Mm9::chr3:86116124..86116132,+#_c23eb28967438bf371d4be8dff902d7dp@chr3:86116124..86116132, +
7.57e-26FFCP PHASE1:Mm9::chr3:37606335..37606337,-#_c23eb28967438bf371d4be8dff902d7d-, p@chr3:37606335..37606337
7.57e-26FFCP PHASE1:Mm9::chr4:125973415..125973418,+#_c23eb28967438bf371d4be8dff902d7dp@chr4:125973415..125973418, +
7.57e-26FFCP PHASE2:Mm9::chr3:86116124..86116132,+#_c23eb28967438bf371d4be8dff902d7dp@chr3:86116124..86116132, +
7.57e-26FFCP PHASE2:Mm9::chr3:37606335..37606337,-#_c23eb28967438bf371d4be8dff902d7dp@chr3:37606335..37606337, -
7.57e-26FFCP PHASE2:Mm9::chr4:125973415..125973418,+#_c23eb28967438bf371d4be8dff902d7dp@chr4:125973415..125973418, +
1.07e-25FFCP PHASE1:Mm9::chr17:68300324..68300336,-#_5a6376e271df8fade5c72c4531872410p5@Arhgap28
1.07e-25FFCP PHASE2:Mm9::chr17:68300324..68300336,-#_5a6376e271df8fade5c72c4531872410p5@Arhgap28
2.33e-25FFCP PHASE2:Mm9::chr7:75096968..75096978,+#_edf19fec94e125c9788ec2b5264bace9p9@Igf1r
2.33e-25FFCP PHASE1:Mm9::chr7:75096968..75096978,+#_edf19fec94e125c9788ec2b5264bace9p9@Igf1r
2.93e-25FFCP PHASE2:Mm9::chr15:101936581..101936594,+#_a135a27383a032d953b5e5c130830091p@chr15:101936581..101936594, +
2.93e-25FFCP PHASE1:Mm9::chr15:101936581..101936594,+#_a135a27383a032d953b5e5c130830091p@chr15:101936581..101936594, +
2.99e-25FFCP PHASE1:Mm9::chr17:23882313..23882330,-#_9e508579831750e951bf714673c96e1bp@chr17:23882313..23882330, -
2.99e-25FFCP PHASE2:Mm9::chr17:23882313..23882330,-#_9e508579831750e951bf714673c96e1bp@chr17:23882313..23882330, -
3.52e-25FFCP PHASE1:Mm9::chr2:155771018..155771042,-#_0ccb9a5127e19b3dd4d39ad509b3f853p1@Gdf5
3.52e-25FFCP PHASE2:Mm9::chr2:155771018..155771042,-#_0ccb9a5127e19b3dd4d39ad509b3f853p1@Gdf5
2.77e-24FFCP PHASE1:Mm9::chr15:77137392..77137399,-#_ef193d661cd9ccef799c1399808ff0c7p16@Rbfox2
2.77e-24FFCP PHASE2:Mm9::chr15:77137392..77137399,-#_ef193d661cd9ccef799c1399808ff0c7p16@Rbfox2