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UBERON:0005424

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Name:presumptive retinal pigmented epithelium
Definition:"Portion of tissue that is the outer layer of the optic cup and will become the retinal pigmented epithelium." [ZFIN:curator]
Xrefs:
links:

EHDAA2:0001306
EMAPA:16677
TAO:0000064
VHOG:0000492

ZFA:0000064
Synonyms: "optic cup outer layer" EXACT [EHDAA2:0001306]
"outer layer optic cup" EXACT [ZFA:0000064]
"presumptive pigmented epithelia" EXACT PLURAL [ZFA:0000064]
Subset: vertebrate_core

Ontology association
Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.

link to ontology dataset
data


Parents

is_a:UBERON:0006598(presumptive structure),UBERON:0010312(immature eye)
part_of:UBERON:0003072(optic cup)



Children

develops from:UBERON:0001782 (pigmented layer of retina)

Ontology Tree: Loaded from BioPortal


FF samples
It includes FANTOM5 samples that overlay the Uberon ontology




Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0005424 (presumptive retinal pigmented epithelium), sorted by p-values
Analyst: Hideya Kawaji

link to source dataset
human : data
mouse : data


P-valueFFCPShort description
2.79e-195FFCP PHASE1:Hg19::chr1:147150847..147150854,-#_c5e0e058c7df9c285d4dbca76b9d100fp@chr1:147150847..147150854, -
2.79e-195FFCP PHASE2:Hg19::chr1:147150847..147150854,-#_c5e0e058c7df9c285d4dbca76b9d100fp@chr1:147150847..147150854, -
3.27e-147FFCP PHASE1:Hg19::chr13:51913806..51913817,+#_394af110e10dd7c64fb14d6e4105d2efp2@SERPINE3
3.27e-147FFCP PHASE2:Hg19::chr13:51913806..51913817,+#_394af110e10dd7c64fb14d6e4105d2efp2@SERPINE3
5.41e-147FFCP PHASE2:Hg19::chr13:99135322..99135327,-#_6f45c29b80e032dccb48530b60d64054p@chr13:99135322..99135327, -
5.41e-147FFCP PHASE1:Hg19::chr13:99135322..99135327,-#_6f45c29b80e032dccb48530b60d64054p@chr13:99135322..99135327, -
8.98e-131FFCP PHASE1:Hg19::chr13:51913893..51913901,+#_6b16c79a6541defd0f41ae008aeba1dep@chr13:51913893..51913901, +
8.98e-131FFCP PHASE2:Hg19::chr13:51913893..51913901,+#_6b16c79a6541defd0f41ae008aeba1dep@chr13:51913893..51913901, +
3.48e-118FFCP PHASE2:Hg19::chr11:109990513..109990520,-#_b0e2d943855f7b4c5650fe539e6b0575p@chr11:109990513..109990520, -
3.48e-118FFCP PHASE1:Hg19::chr11:109990513..109990520,-#_b0e2d943855f7b4c5650fe539e6b0575p@chr11:109990513..109990520, -
1.16e-117FFCP PHASE2:Hg19::chr5:70308745..70308754,-#_e0eeb11eb00586cf8912166016ef8f95p@chr5:70308745..70308754, -
1.16e-117FFCP PHASE1:Hg19::chr5:70308745..70308754,-#_e0eeb11eb00586cf8912166016ef8f95p@chr5:70308745..70308754, -
7.95e-99FFCP PHASE2:Hg19::chr11:61522844..61522875,+#_fdeed0e1e1b2cd4e3ac69e12bdbc6fb6p2@C11orf9
7.95e-99FFCP PHASE1:Hg19::chr11:61522844..61522875,+#_fdeed0e1e1b2cd4e3ac69e12bdbc6fb6p2@C11orf9
2.17e-98FFCP PHASE1:Hg19::chr2:235591306..235591328,+#_0f534057025fc0fc12cbe53acbcc7fccp@chr2:235591306..235591328, +
2.17e-98FFCP PHASE2:Hg19::chr2:235591306..235591328,+#_0f534057025fc0fc12cbe53acbcc7fccp@chr2:235591306..235591328, +
6.24e-88FFCP PHASE2:Hg19::chr11:61522820..61522823,+#_2cae0c1b64d93308a421745152e0f280p9@C11orf9
6.24e-88FFCP PHASE1:Hg19::chr11:61522820..61522823,+#_2cae0c1b64d93308a421745152e0f280p9@C11orf9
9.74e-88FFCP PHASE2:Hg19::chr8:75898210..75898219,+#_74cfd4904953cc0d4e91a04c55f22303p11@CRISPLD1
9.74e-88FFCP PHASE1:Hg19::chr8:75898210..75898219,+#_74cfd4904953cc0d4e91a04c55f22303p11@CRISPLD1
1.52e-87FFCP PHASE1:Hg19::chr2:45166274..45166281,-#_ec140ca29e5218167ecb67587155d7b3p5@ENST00000437916
1.52e-87FFCP PHASE2:Hg19::chr2:45166274..45166281,-#_ec140ca29e5218167ecb67587155d7b3p5@ENST00000437916
2.28e-85FFCP PHASE1:Hg19::chr13:51913819..51913838,+#_d13e8192292d46959024b488ba95e0c5p1@SERPINE3
2.28e-85FFCP PHASE2:Hg19::chr13:51913819..51913838,+#_d13e8192292d46959024b488ba95e0c5p1@SERPINE3
1.01e-74FFCP PHASE1:Hg19::chr3:69928426..69928436,+#_76bb02458a8a5e891d50f9fa0e8b7b53p@chr3:69928426..69928436, +
1.01e-74FFCP PHASE2:Hg19::chr3:69928426..69928436,+#_76bb02458a8a5e891d50f9fa0e8b7b53p@chr3:69928426..69928436, +
1.29e-74FFCP PHASE1:Hg19::chr3:69928404..69928418,+#_bc2163a8a4d8d4ef27f90629d3c6aee1p@chr3:69928404..69928418, +
1.29e-74FFCP PHASE2:Hg19::chr3:69928404..69928418,+#_bc2163a8a4d8d4ef27f90629d3c6aee1p@chr3:69928404..69928418, +
2.14e-74FFCP PHASE2:Hg19::chr6:168250971..168250985,+#_1ae998c26a843c8244cbdef9b7c4b08cp@chr6:168250971..168250985, +
2.14e-74FFCP PHASE1:Hg19::chr6:168250971..168250985,+#_1ae998c26a843c8244cbdef9b7c4b08cp@chr6:168250971..168250985, +
2.14e-74FFCP PHASE2:Hg19::chr22:37633537..37633546,-#_1ae998c26a843c8244cbdef9b7c4b08cp@chr22:37633537..37633546, -
2.14e-74FFCP PHASE1:Hg19::chr22:37633537..37633546,-#_1ae998c26a843c8244cbdef9b7c4b08cp@chr22:37633537..37633546, -
3.54e-74FFCP PHASE2:Hg19::chr1:43533230..43533270,+#_8f1bd94f138f49f7b916f8057ffa0819+, p@chr1:43533230..43533270
3.54e-74FFCP PHASE1:Hg19::chr1:43533230..43533270,+#_8f1bd94f138f49f7b916f8057ffa0819p@chr1:43533230..43533270, +
1.54e-66FFCP PHASE2:Hg19::chr21:36041275..36041282,+#_98215c70f62e8dbe5003681510498f79p5@CLIC6
1.54e-66FFCP PHASE1:Hg19::chr21:36041275..36041282,+#_98215c70f62e8dbe5003681510498f79p5@CLIC6
2.39e-66FFCP PHASE1:Hg19::chr13:51913997..51914020,+#_eeb7752c39158ae9c9ef257bbc389726p@chr13:51913997..51914020, +
2.39e-66FFCP PHASE2:Hg19::chr13:51913997..51914020,+#_eeb7752c39158ae9c9ef257bbc389726p@chr13:51913997..51914020, +
6.53e-66FFCP PHASE2:Hg19::chr6:168251000..168251007,+#_bbaa571ee15c44ff485c01c639dd335fp@chr6:168251000..168251007, +
6.53e-66FFCP PHASE1:Hg19::chr6:168251000..168251007,+#_bbaa571ee15c44ff485c01c639dd335fp@chr6:168251000..168251007, +
2.98e-60FFCP PHASE1:Hg19::chr13:99135278..99135298,-#_71ca088ab62a583893cbd589605b5372p@chr13:99135278..99135298, -
2.98e-60FFCP PHASE2:Hg19::chr13:99135278..99135298,-#_71ca088ab62a583893cbd589605b5372p@chr13:99135278..99135298, -
5.01e-55FFCP PHASE2:Hg19::chr3:69928371..69928385,+#_9963275bbf324919198c7e47423f1a54p@chr3:69928371..69928385, +
5.01e-55FFCP PHASE1:Hg19::chr3:69928371..69928385,+#_9963275bbf324919198c7e47423f1a54p@chr3:69928371..69928385, +
7.24e-55FFCP PHASE1:Hg19::chr14:87636652..87636657,-#_d76fb30429ea892c84682fc09bff7934p@chr14:87636652..87636657, -
7.24e-55FFCP PHASE2:Hg19::chr14:87636652..87636657,-#_d76fb30429ea892c84682fc09bff7934p@chr14:87636652..87636657, -
1.68e-53FFCP PHASE1:Hg19::chr2:235591286..235591298,+#_18b3fc5f85732e8815015b6680c66686p@chr2:235591286..235591298, +
1.68e-53FFCP PHASE2:Hg19::chr2:235591286..235591298,+#_18b3fc5f85732e8815015b6680c66686p@chr2:235591286..235591298, +
6.39e-53FFCP PHASE2:Hg19::chr16:84228961..84228982,+#_db32d38115a3fb8975e630a31ada6dcbp@chr16:84228961..84228982, +
6.39e-53FFCP PHASE2:Hg19::chr11:119217442..119217445,-#_db32d38115a3fb8975e630a31ada6dcbp5@MFRP, p6@C1QTNF5
6.39e-53FFCP PHASE1:Hg19::chr11:119217442..119217445,-#_db32d38115a3fb8975e630a31ada6dcbp5@MFRP, p6@C1QTNF5
6.39e-53FFCP PHASE1:Hg19::chr16:84228961..84228982,+#_db32d38115a3fb8975e630a31ada6dcbp@chr16:84228961..84228982, +
9.6e-51FFCP PHASE2:Hg19::chr21:36041264..36041274,+#_c381c1805a2428da0cba0258a15b72b7p3@CLIC6
9.6e-51FFCP PHASE1:Hg19::chr21:36041264..36041274,+#_c381c1805a2428da0cba0258a15b72b7p3@CLIC6
1.89e-50FFCP PHASE1:Hg19::chr11:75201755..75201762,-#_1e35161d85a1bd271cca6e6d41024fd9p7@GDPD5
1.89e-50FFCP PHASE2:Hg19::chr11:75201755..75201762,-#_1e35161d85a1bd271cca6e6d41024fd9p7@GDPD5
7.24e-50FFCP PHASE1:Hg19::chr11:119217421..119217435,-#_32184d1e84f5f82dcb862615e868c418p4@MFRP, p5@C1QTNF5
7.24e-50FFCP PHASE2:Hg19::chr11:119217421..119217435,-#_32184d1e84f5f82dcb862615e868c418p4@MFRP, p5@C1QTNF5
6.25e-45FFCP PHASE1:Hg19::chr17:932596..932605,-#_e5b921c2c0ff43c5600842d5ef4bed7dp@chr17:932596..932605, -
6.25e-45FFCP PHASE2:Hg19::chr17:932596..932605,-#_e5b921c2c0ff43c5600842d5ef4bed7dp@chr17:932596..932605, -
1.22e-44FFCP PHASE1:Hg19::chr20:52790691..52790695,-#_a4807607632376655baf154dda95a906p5@CYP24A1
1.22e-44FFCP PHASE2:Hg19::chr20:52790691..52790695,-#_a4807607632376655baf154dda95a906p5@CYP24A1
1.22e-44FFCP PHASE2:Hg19::chr22:38480132..38480159,-#_a4807607632376655baf154dda95a906p1@SLC16A8
1.22e-44FFCP PHASE1:Hg19::chr22:38480132..38480159,-#_a4807607632376655baf154dda95a906p1@SLC16A8
1.22e-44FFCP PHASE1:Hg19::chr17:932340..932343,-#_a4807607632376655baf154dda95a906p@chr17:932340..932343, -
1.22e-44FFCP PHASE2:Hg19::chr17:932340..932343,-#_a4807607632376655baf154dda95a906p@chr17:932340..932343, -
2.38e-44FFCP PHASE2:Hg19::chr3:98672197..98672201,+#_19b781a5729e6536e4334c3309517beep@chr3:98672197..98672201, +
2.38e-44FFCP PHASE1:Hg19::chr3:98672197..98672201,+#_19b781a5729e6536e4334c3309517beep@chr3:98672197..98672201, +
2.97e-44FFCP PHASE1:Hg19::chr9:127025189..127025200,+#_52bee44938e75f942e8f27993b1c755cp1@ENST00000437461
2.97e-44FFCP PHASE2:Hg19::chr9:127025189..127025200,+#_52bee44938e75f942e8f27993b1c755cp1@ENST00000437461
2.97e-44FFCP PHASE2:Hg19::chr3:183733654..183733680,-#_52bee44938e75f942e8f27993b1c755cp@chr3:183733654..183733680, -
2.97e-44FFCP PHASE1:Hg19::chr3:183733654..183733680,-#_52bee44938e75f942e8f27993b1c755cp@chr3:183733654..183733680, -
4.49e-44FFCP PHASE1:Hg19::chr9:140088882..140088898,-#_30efa866a35b22a19def807808b948a7p@chr9:140088882..140088898, -
4.49e-44FFCP PHASE2:Hg19::chr9:140088882..140088898,-#_30efa866a35b22a19def807808b948a7p@chr9:140088882..140088898, -
1.24e-43FFCP PHASE1:Hg19::chr14:28081776..28081788,+#_56779ffab5267402f57a8a95b54aeb7ep1@LOC100505967
1.24e-43FFCP PHASE2:Hg19::chr14:28081776..28081788,+#_56779ffab5267402f57a8a95b54aeb7ep1@LOC100505967
2.95e-43FFCP PHASE1:Hg19::chr2:45169172..45169177,+#_4fd2826b62d82e789dc6611bbe2b7b75p11@SIX3
2.95e-43FFCP PHASE2:Hg19::chr2:45169172..45169177,+#_4fd2826b62d82e789dc6611bbe2b7b75p11@SIX3
4.55e-43FFCP PHASE1:Hg19::chr5:33984786..33984820,-#_2afa61e63e4e140e44259877ddbe295ep2@SLC45A2
4.55e-43FFCP PHASE2:Hg19::chr5:33984786..33984820,-#_2afa61e63e4e140e44259877ddbe295ep2@SLC45A2
3.86e-41FFCP PHASE1:Hg19::chr16:68301840..68301845,+#_933528064c2e04575897a05c0b6b6219p@chr16:68301840..68301845, +
3.86e-41FFCP PHASE2:Hg19::chr16:68301840..68301845,+#_933528064c2e04575897a05c0b6b6219p@chr16:68301840..68301845, +
9.96e-41FFCP PHASE1:Hg19::chr19:49140255..49140268,-#_5cdc1f326b0ed7dc99a4360f5777da7ap9@DBP
9.96e-41FFCP PHASE2:Hg19::chr19:49140255..49140268,-#_5cdc1f326b0ed7dc99a4360f5777da7ap9@DBP
1.31e-40FFCP PHASE2:Hg19::chr12:52579447..52579461,-#_5579853df116006508859188a06ae4f1p6@KRT80
1.31e-40FFCP PHASE1:Hg19::chr12:52579447..52579461,-#_5579853df116006508859188a06ae4f1p6@KRT80
1.49e-40FFCP PHASE1:Hg19::chr4:23886471..23886501,-#_58aaa7c9663e8e020fbd839c387852c0p5@PPARGC1A
1.49e-40FFCP PHASE2:Hg19::chr4:23886471..23886501,-#_58aaa7c9663e8e020fbd839c387852c0p5@PPARGC1A
1.71e-40FFCP PHASE2:Hg19::chr11:119217318..119217346,-#_d34d79f1bd0c6c5f5b3ab6991e020624p2@MFRP
1.71e-40FFCP PHASE1:Hg19::chr11:119217318..119217346,-#_d34d79f1bd0c6c5f5b3ab6991e020624p2@MFRP
1.96e-40FFCP PHASE2:Hg19::chr11:119217405..119217420,-#_7f81ff304f0d9f098d3403d885309b1ep3@C1QTNF5, p3@MFRP
1.96e-40FFCP PHASE1:Hg19::chr11:119217405..119217420,-#_7f81ff304f0d9f098d3403d885309b1ep3@C1QTNF5, p3@MFRP
2.93e-40FFCP PHASE2:Hg19::chr8:144905532..144905541,-#_cf29d5a33b10c31478571ddee9cd373dp6@PUF60
2.93e-40FFCP PHASE1:Hg19::chr8:144905532..144905541,-#_cf29d5a33b10c31478571ddee9cd373dp6@PUF60
3.83e-40FFCP PHASE2:Hg19::chr2:45162900..45162914,-#_4fd476f320e1ac413db7f3ecd9e43b46p1@ENST00000432125
3.83e-40FFCP PHASE1:Hg19::chr2:45162900..45162914,-#_4fd476f320e1ac413db7f3ecd9e43b46p1@ENST00000432125
6.54e-40FFCP PHASE2:Hg19::chr9:73483992..73484003,-#_30cd7a57624e6b861aa0d2dd734010d3p6@TRPM3
6.54e-40FFCP PHASE1:Hg19::chr9:73483992..73484003,-#_30cd7a57624e6b861aa0d2dd734010d3p6@TRPM3
1.11e-38FFCP PHASE1:Hg19::chr11:67776077..67776088,+#_7e6fe289441478057322ebc29f97da06p5@ALDH3B1
1.11e-38FFCP PHASE2:Hg19::chr11:67776077..67776088,+#_7e6fe289441478057322ebc29f97da06p5@ALDH3B1