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UBERON:0005425

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Name:presumptive neural retina
Namespace:FANTOM
Definition:"Portion of tissue that is the inner layer of the optic cup and will become the neural retina." [ZFIN:curator]
Xrefs:
links:

EHDAA2:0001304
EMAPA:16675
TAO:0001071
VHOG:0000490

ZFA:0001071
Synonyms: "inner layer optic cup" EXACT [ZFA:0001071]
"optic cup inner layer" EXACT [EHDAA2:0001304]
"presumptive retinas" EXACT PLURAL [ZFA:0001071]
Subset: vertebrate_core

Ontology association
Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.

link to ontology dataset
data


Parents

is_a:UBERON:0006598(presumptive structure),UBERON:0010312(immature eye)
part_of:UBERON:0003072(optic cup)



Children

develops from:UBERON:0003902 (retinal neural layer)

Ontology Tree: Loaded from BioPortal


FF samples
It includes FANTOM5 samples that overlay the Uberon ontology




Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0005425 (presumptive neural retina), sorted by p-values
Analyst: Hideya Kawaji

link to source dataset
human : data
mouse : data


P-valueFFCPShort description
5.42e-195FFCP PHASE2:Hg19::chr12:57628762..57628773,-#_d49581a4c58d005b33fbe5b8ac84ab6cp@chr12:57628762..57628773, -
5.42e-195FFCP PHASE1:Hg19::chr12:57628762..57628773,-#_d49581a4c58d005b33fbe5b8ac84ab6cp@chr12:57628762..57628773, -
9.37e-99FFCP PHASE2:Hg19::chr14:105807545..105807554,+#_d7117695103e6fc3dcd0e53e92af2cc5p@chr14:105807545..105807554, +
9.37e-99FFCP PHASE2:Hg19::chr2:60133192..60133194,-#_d7117695103e6fc3dcd0e53e92af2cc5p@chr2:60133192..60133194, -
9.37e-99FFCP PHASE1:Hg19::chr7:15056365..15056368,-#_d7117695103e6fc3dcd0e53e92af2cc5-, p@chr7:15056365..15056368
9.37e-99FFCP PHASE2:Hg19::chr18:25161980..25161984,-#_d7117695103e6fc3dcd0e53e92af2cc5-, p@chr18:25161980..25161984
9.37e-99FFCP PHASE1:Hg19::chr5:151258901..151258902,+#_d7117695103e6fc3dcd0e53e92af2cc5p@chr5:151258901..151258902, +
9.37e-99FFCP PHASE1:Hg19::chr2:188432107..188432111,+#_d7117695103e6fc3dcd0e53e92af2cc5p@chr2:188432107..188432111, +
9.37e-99FFCP PHASE1:Hg19::chr2:60133192..60133194,-#_d7117695103e6fc3dcd0e53e92af2cc5-, p@chr2:60133192..60133194
9.37e-99FFCP PHASE1:Hg19::chr18:74702556..74702558,-#_d7117695103e6fc3dcd0e53e92af2cc5p@chr18:74702556..74702558, -
9.37e-99FFCP PHASE2:Hg19::chr1:62928606..62928608,+#_d7117695103e6fc3dcd0e53e92af2cc5p@chr1:62928606..62928608, +
9.37e-99FFCP PHASE1:Hg19::chr14:105807545..105807554,+#_d7117695103e6fc3dcd0e53e92af2cc5p@chr14:105807545..105807554, +
9.37e-99FFCP PHASE1:Hg19::chr5:149250331..149250335,-#_d7117695103e6fc3dcd0e53e92af2cc5p@chr5:149250331..149250335, -
9.37e-99FFCP PHASE1:Hg19::chr4:127394496..127394500,-#_d7117695103e6fc3dcd0e53e92af2cc5p@chr4:127394496..127394500, -
9.37e-99FFCP PHASE1:Hg19::chr1:62928606..62928608,+#_d7117695103e6fc3dcd0e53e92af2cc5p@chr1:62928606..62928608, +
9.37e-99FFCP PHASE2:Hg19::chr4:127394496..127394500,-#_d7117695103e6fc3dcd0e53e92af2cc5p@chr4:127394496..127394500, -
9.37e-99FFCP PHASE1:Hg19::chr18:25161980..25161984,-#_d7117695103e6fc3dcd0e53e92af2cc5p@chr18:25161980..25161984, -
9.37e-99FFCP PHASE2:Hg19::chr5:149250331..149250335,-#_d7117695103e6fc3dcd0e53e92af2cc5p@chr5:149250331..149250335, -
9.37e-99FFCP PHASE2:Hg19::chr2:188432107..188432111,+#_d7117695103e6fc3dcd0e53e92af2cc5p@chr2:188432107..188432111, +
9.37e-99FFCP PHASE2:Hg19::chr5:151258901..151258902,+#_d7117695103e6fc3dcd0e53e92af2cc5p@chr5:151258901..151258902, +
9.37e-99FFCP PHASE2:Hg19::chr7:15056365..15056368,-#_d7117695103e6fc3dcd0e53e92af2cc5p@chr7:15056365..15056368, -
9.37e-99FFCP PHASE2:Hg19::chr18:74702556..74702558,-#_d7117695103e6fc3dcd0e53e92af2cc5p@chr18:74702556..74702558, -
2.55e-98FFCP PHASE2:Hg19::chr9:19514976..19514978,-#_3ed8ef55777c3b623f5fc9b1f7764abfp@chr9:19514976..19514978, -
2.55e-98FFCP PHASE1:Hg19::chr3:77060783..77060789,+#_3ed8ef55777c3b623f5fc9b1f7764abfp@chr3:77060783..77060789, +
2.55e-98FFCP PHASE2:Hg19::chr2:134472430..134472432,+#_3ed8ef55777c3b623f5fc9b1f7764abfp@chr2:134472430..134472432, +
2.55e-98FFCP PHASE2:Hg19::chr16:70563415..70563420,+#_3ed8ef55777c3b623f5fc9b1f7764abfp4@SNORD111B
2.55e-98FFCP PHASE2:Hg19::chr3:13992334..13992338,-#_3ed8ef55777c3b623f5fc9b1f7764abfp@chr3:13992334..13992338, -
2.55e-98FFCP PHASE2:Hg19::chr5:103200303..103200307,+#_3ed8ef55777c3b623f5fc9b1f7764abfp@chr5:103200303..103200307, +
2.55e-98FFCP PHASE2:Hg19::chr3:77060783..77060789,+#_3ed8ef55777c3b623f5fc9b1f7764abfp@chr3:77060783..77060789, +
2.55e-98FFCP PHASE2:Hg19::chr3:181328346..181328351,+#_3ed8ef55777c3b623f5fc9b1f7764abfp22@SOX2-OT
2.55e-98FFCP PHASE2:Hg19::chr2:165170873..165170919,-#_3ed8ef55777c3b623f5fc9b1f7764abfp@chr2:165170873..165170919, -
2.55e-98FFCP PHASE1:Hg19::chrX:25873187..25873209,+#_3ed8ef55777c3b623f5fc9b1f7764abfp@chrX:25873187..25873209, +
2.55e-98FFCP PHASE2:Hg19::chr2:21277180..21277193,+#_3ed8ef55777c3b623f5fc9b1f7764abfp@chr2:21277180..21277193, +
2.55e-98FFCP PHASE1:Hg19::chr3:131712314..131712315,-#_3ed8ef55777c3b623f5fc9b1f7764abfp@chr3:131712314..131712315, -
2.55e-98FFCP PHASE1:Hg19::chr5:58471631..58471634,+#_3ed8ef55777c3b623f5fc9b1f7764abfp@chr5:58471631..58471634, +
2.55e-98FFCP PHASE1:Hg19::chr5:24554148..24554153,+#_3ed8ef55777c3b623f5fc9b1f7764abfp1@ENST00000510391
2.55e-98FFCP PHASE1:Hg19::chr12:72875355..72875358,+#_3ed8ef55777c3b623f5fc9b1f7764abfp@chr12:72875355..72875358, +
2.55e-98FFCP PHASE2:Hg19::chr1:1413227..1413230,+#_3ed8ef55777c3b623f5fc9b1f7764abfp2@ATAD3B
2.55e-98FFCP PHASE1:Hg19::chr2:29484252..29484254,-#_3ed8ef55777c3b623f5fc9b1f7764abfp@chr2:29484252..29484254, -
2.55e-98FFCP PHASE1:Hg19::chr8:133945378..133945386,+#_3ed8ef55777c3b623f5fc9b1f7764abfp@chr8:133945378..133945386, +
2.55e-98FFCP PHASE1:Hg19::chr3:181328472..181328478,+#_3ed8ef55777c3b623f5fc9b1f7764abfp25@SOX2-OT
2.55e-98FFCP PHASE1:Hg19::chr11:30166055..30166059,-#_3ed8ef55777c3b623f5fc9b1f7764abf-, p@chr11:30166055..30166059
2.55e-98FFCP PHASE2:Hg19::chr2:242808350..242808356,+#_3ed8ef55777c3b623f5fc9b1f7764abfp2@LOC100131763
2.55e-98FFCP PHASE2:Hg19::chr14:76447439..76447452,-#_3ed8ef55777c3b623f5fc9b1f7764abfp18@TGFB3
2.55e-98FFCP PHASE1:Hg19::chr2:134472430..134472432,+#_3ed8ef55777c3b623f5fc9b1f7764abfp@chr2:134472430..134472432, +
2.55e-98FFCP PHASE1:Hg19::chr5:126962527..126962529,-#_3ed8ef55777c3b623f5fc9b1f7764abfp@chr5:126962527..126962529, -
2.55e-98FFCP PHASE2:Hg19::chr10:22768515..22768517,+#_3ed8ef55777c3b623f5fc9b1f7764abfp@chr10:22768515..22768517, +
2.55e-98FFCP PHASE2:Hg19::chr19:20382476..20382481,-#_3ed8ef55777c3b623f5fc9b1f7764abfp@chr19:20382476..20382481, -
2.55e-98FFCP PHASE2:Hg19::chr13:64423563..64423566,+#_3ed8ef55777c3b623f5fc9b1f7764abfp@chr13:64423563..64423566, +
2.55e-98FFCP PHASE1:Hg19::chr10:118927879..118927891,+#_3ed8ef55777c3b623f5fc9b1f7764abfp@chr10:118927879..118927891, +
2.55e-98FFCP PHASE1:Hg19::chr2:133035182..133035195,-#_3ed8ef55777c3b623f5fc9b1f7764abfp@chr2:133035182..133035195, -
2.55e-98FFCP PHASE1:Hg19::chr19:48479835..48479841,-#_3ed8ef55777c3b623f5fc9b1f7764abfp@chr19:48479835..48479841, -
2.55e-98FFCP PHASE2:Hg19::chr11:30166055..30166059,-#_3ed8ef55777c3b623f5fc9b1f7764abfp@chr11:30166055..30166059, -
2.55e-98FFCP PHASE2:Hg19::chr4:139590958..139590961,-#_3ed8ef55777c3b623f5fc9b1f7764abfp@chr4:139590958..139590961, -
2.55e-98FFCP PHASE1:Hg19::chr19:35978717..35978722,-#_3ed8ef55777c3b623f5fc9b1f7764abfp@chr19:35978717..35978722, -
2.55e-98FFCP PHASE1:Hg19::chr12:296753..296755,-#_3ed8ef55777c3b623f5fc9b1f7764abfp@chr12:296753..296755, -
2.55e-98FFCP PHASE2:Hg19::chr15:36402459..36402465,-#_3ed8ef55777c3b623f5fc9b1f7764abfp@chr15:36402459..36402465, -
2.55e-98FFCP PHASE1:Hg19::chr14:78718132..78718157,+#_3ed8ef55777c3b623f5fc9b1f7764abfp@chr14:78718132..78718157, +
2.55e-98FFCP PHASE2:Hg19::chr9:74167667..74167687,-#_3ed8ef55777c3b623f5fc9b1f7764abfp@chr9:74167667..74167687, -
2.55e-98FFCP PHASE2:Hg19::chr1:169073323..169073334,+#_3ed8ef55777c3b623f5fc9b1f7764abfp4@ENST00000415637
2.55e-98FFCP PHASE1:Hg19::chr1:66713214..66713221,+#_3ed8ef55777c3b623f5fc9b1f7764abfp@chr1:66713214..66713221, +
2.55e-98FFCP PHASE2:Hg19::chr14:106176908..106176916,-#_3ed8ef55777c3b623f5fc9b1f7764abfp3@BC098451
2.55e-98FFCP PHASE2:Hg19::chr5:33229308..33229311,-#_3ed8ef55777c3b623f5fc9b1f7764abfp@chr5:33229308..33229311, -
2.55e-98FFCP PHASE1:Hg19::chr9:74167667..74167687,-#_3ed8ef55777c3b623f5fc9b1f7764abfp@chr9:74167667..74167687, -
2.55e-98FFCP PHASE1:Hg19::chr6:168558338..168558388,-#_3ed8ef55777c3b623f5fc9b1f7764abfp@chr6:168558338..168558388, -
2.55e-98FFCP PHASE1:Hg19::chr7:152790347..152790351,+#_3ed8ef55777c3b623f5fc9b1f7764abfp@chr7:152790347..152790351, +
2.55e-98FFCP PHASE2:Hg19::chr7:152790347..152790351,+#_3ed8ef55777c3b623f5fc9b1f7764abfp@chr7:152790347..152790351, +
2.55e-98FFCP PHASE1:Hg19::chr21:22483836..22483880,+#_3ed8ef55777c3b623f5fc9b1f7764abfp@chr21:22483836..22483880, +
2.55e-98FFCP PHASE2:Hg19::chr5:126962527..126962529,-#_3ed8ef55777c3b623f5fc9b1f7764abfp@chr5:126962527..126962529, -
2.55e-98FFCP PHASE1:Hg19::chr3:163246025..163246029,+#_3ed8ef55777c3b623f5fc9b1f7764abfp@chr3:163246025..163246029, +
2.55e-98FFCP PHASE2:Hg19::chrX:25873187..25873209,+#_3ed8ef55777c3b623f5fc9b1f7764abfp@chrX:25873187..25873209, +
2.55e-98FFCP PHASE1:Hg19::chrX:131884370..131884375,-#_3ed8ef55777c3b623f5fc9b1f7764abfp@chrX:131884370..131884375, -
2.55e-98FFCP PHASE1:Hg19::chr8:22000519..22000525,-#_3ed8ef55777c3b623f5fc9b1f7764abfp@chr8:22000519..22000525, -
2.55e-98FFCP PHASE1:Hg19::chr14:106176908..106176916,-#_3ed8ef55777c3b623f5fc9b1f7764abfp3@BC098451
2.55e-98FFCP PHASE1:Hg19::chr6:121951983..121951986,+#_3ed8ef55777c3b623f5fc9b1f7764abfp@chr6:121951983..121951986, +
2.55e-98FFCP PHASE1:Hg19::chr7:73444812..73444816,+#_3ed8ef55777c3b623f5fc9b1f7764abfp@chr7:73444812..73444816, +
2.55e-98FFCP PHASE2:Hg19::chr16:19586229..19586233,+#_3ed8ef55777c3b623f5fc9b1f7764abfp12@C16orf62
2.55e-98FFCP PHASE1:Hg19::chr17:12935401..12935405,-#_3ed8ef55777c3b623f5fc9b1f7764abfp@chr17:12935401..12935405, -
2.55e-98FFCP PHASE1:Hg19::chr12:59444098..59444102,+#_3ed8ef55777c3b623f5fc9b1f7764abfp@chr12:59444098..59444102, +
2.55e-98FFCP PHASE2:Hg19::chr3:181328472..181328478,+#_3ed8ef55777c3b623f5fc9b1f7764abfp25@SOX2-OT
2.55e-98FFCP PHASE1:Hg19::chr22:30951607..30951613,-#_3ed8ef55777c3b623f5fc9b1f7764abfp@chr22:30951607..30951613, -
2.55e-98FFCP PHASE2:Hg19::chr3:39827273..39827281,+#_3ed8ef55777c3b623f5fc9b1f7764abfp@chr3:39827273..39827281, +
2.55e-98FFCP PHASE2:Hg19::chr10:118927879..118927891,+#_3ed8ef55777c3b623f5fc9b1f7764abf+, p@chr10:118927879..118927891
2.55e-98FFCP PHASE1:Hg19::chr12:68567714..68567717,+#_3ed8ef55777c3b623f5fc9b1f7764abfp@chr12:68567714..68567717, +
2.55e-98FFCP PHASE1:Hg19::chr1:203036812..203036840,+#_3ed8ef55777c3b623f5fc9b1f7764abfp@chr1:203036812..203036840, +
2.55e-98FFCP PHASE2:Hg19::chr5:109466651..109466653,+#_3ed8ef55777c3b623f5fc9b1f7764abfp@chr5:109466651..109466653, +
2.55e-98FFCP PHASE2:Hg19::chr3:131712314..131712315,-#_3ed8ef55777c3b623f5fc9b1f7764abfp@chr3:131712314..131712315, -
2.55e-98FFCP PHASE2:Hg19::chr7:73444812..73444816,+#_3ed8ef55777c3b623f5fc9b1f7764abfp@chr7:73444812..73444816, +
2.55e-98FFCP PHASE2:Hg19::chr16:55740953..55740956,+#_3ed8ef55777c3b623f5fc9b1f7764abfp@chr16:55740953..55740956, +
2.55e-98FFCP PHASE2:Hg19::chr5:54763740..54763746,-#_3ed8ef55777c3b623f5fc9b1f7764abfp10@PPAP2A
2.55e-98FFCP PHASE1:Hg19::chr1:169073323..169073334,+#_3ed8ef55777c3b623f5fc9b1f7764abfp4@ENST00000415637
2.55e-98FFCP PHASE1:Hg19::chr2:97626726..97626741,+#_3ed8ef55777c3b623f5fc9b1f7764abf+, p@chr2:97626726..97626741
2.55e-98FFCP PHASE2:Hg19::chrX:131884370..131884375,-#_3ed8ef55777c3b623f5fc9b1f7764abfp@chrX:131884370..131884375, -
2.55e-98FFCP PHASE2:Hg19::chr19:35978717..35978722,-#_3ed8ef55777c3b623f5fc9b1f7764abfp@chr19:35978717..35978722, -
2.55e-98FFCP PHASE2:Hg19::chr14:78718132..78718157,+#_3ed8ef55777c3b623f5fc9b1f7764abfp@chr14:78718132..78718157, +
2.55e-98FFCP PHASE2:Hg19::chr2:192696669..192696673,+#_3ed8ef55777c3b623f5fc9b1f7764abfp@chr2:192696669..192696673, +
2.55e-98FFCP PHASE1:Hg19::chr3:13992334..13992338,-#_3ed8ef55777c3b623f5fc9b1f7764abfp@chr3:13992334..13992338, -
2.55e-98FFCP PHASE1:Hg19::chr18:45498690..45498695,-#_3ed8ef55777c3b623f5fc9b1f7764abfp@chr18:45498690..45498695, -
2.55e-98FFCP PHASE2:Hg19::chr7:88535666..88535671,+#_3ed8ef55777c3b623f5fc9b1f7764abfp@chr7:88535666..88535671, +
2.55e-98FFCP PHASE1:Hg19::chr2:165170873..165170919,-#_3ed8ef55777c3b623f5fc9b1f7764abfp@chr2:165170873..165170919, -