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UBERON:0005426

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Name:lens vesicle
Namespace:FANTOM
Definition:"Portion of tissue that gives rise to the lens." [https://sourceforge.net/tracker/?func
Xrefs:
links:

EHDAA2:0000983
EHDAA:4737
EMAPA:17163
SCTID:361510002
TAO:0002205
VHOG:0001163
ZFA:0001679

ZFIN:ZDB-ANAT-090226-2
Synonyms: "hollow lens vesicle" NARROW SENSU []
"solid lens vesicle" NARROW SENSU [ZFA:0001679]
Comments:Development notes: the lens of zebrafish (and other teleosts) forms from delamination of cells from the lens placode; thus, there is no formation of a hollow lens vesicle, in contrast to the situation in mammals and birds (Glass and Dahm, 2004) [PMID:16496288] The lens of the zebrafish forms by delamination of lens placodal cells and not through invagination. This results in a solid spherical mass as opposed to a hollow lens vesicle. Detachment of the solid lens vesicle of zebrafish at 24b26 hpf is accomplished in part by apoptosis, similar to mammals[ZFA]
Subset: vertebrate_core

Ontology association
Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.

link to ontology dataset
data


Parents

is_a:UBERON:0000479(tissue),UBERON:0004121(ectoderm-derived structure)
develops_from:UBERON:0003073(lens placode)



Children

develops from:UBERON:0000965 (lens of camera-type eye)

Ontology Tree: Loaded from BioPortal


FF samples
It includes FANTOM5 samples that overlay the Uberon ontology




Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0005426 (lens vesicle), sorted by p-values
Analyst: Hideya Kawaji

link to source dataset
human : data
mouse : data


P-valueFFCPShort description
1.41e-88FFCP PHASE2:Hg19::chr22:25595823..25595826,+#_9a1f49a9ba5170c6f5c3fe7553e681b0p1@CRYBB3
1.41e-88FFCP PHASE1:Hg19::chr22:25595823..25595826,+#_9a1f49a9ba5170c6f5c3fe7553e681b0p1@CRYBB3
3.32e-74FFCP PHASE2:Hg19::chr22:25615600..25615611,+#_ef95f245464de3d3006bb82bcf413c98p1@CRYBB2
3.32e-74FFCP PHASE1:Hg19::chr22:25615600..25615611,+#_ef95f245464de3d3006bb82bcf413c98p1@CRYBB2
5.48e-74FFCP PHASE2:Hg19::chr19:51891222..51891233,-#_288e6b96e734cec548834e2e6409fc1ap1@LIM2
5.48e-74FFCP PHASE1:Hg19::chr19:51891222..51891233,-#_288e6b96e734cec548834e2e6409fc1ap1@LIM2
3.8e-56FFCP PHASE2:Hg19::chr22:27017921..27017928,+#_ae6fdde5c3940669d781e7cdfc30f819p1@CRYBA4
3.8e-56FFCP PHASE1:Hg19::chr22:27017921..27017928,+#_ae6fdde5c3940669d781e7cdfc30f819p1@CRYBA4
3.1e-50FFCP PHASE1:Hg19::chr20:61204240..61204241,+#_dee81e90f40530db1ed9a0623fc6aab6p@chr20:61204240..61204241, +
3.1e-50FFCP PHASE1:Hg19::chr13:104778247..104778293,+#_dee81e90f40530db1ed9a0623fc6aab6p@chr13:104778247..104778293, +
3.1e-50FFCP PHASE2:Hg19::chr13:104778247..104778293,+#_dee81e90f40530db1ed9a0623fc6aab6p@chr13:104778247..104778293, +
3.1e-50FFCP PHASE2:Hg19::chr20:61204240..61204241,+#_dee81e90f40530db1ed9a0623fc6aab6p@chr20:61204240..61204241, +
5.14e-50FFCP PHASE2:Hg19::chr14:37642016..37642022,-#_65af1568ee62506984b5d73e871a874ap7@SLC25A21
5.14e-50FFCP PHASE2:Hg19::chr21:44592820..44592840,-#_65af1568ee62506984b5d73e871a874ap2@CU686889
5.14e-50FFCP PHASE1:Hg19::chr21:44592820..44592840,-#_65af1568ee62506984b5d73e871a874ap2@CU686889
5.14e-50FFCP PHASE1:Hg19::chr14:37642016..37642022,-#_65af1568ee62506984b5d73e871a874ap7@SLC25A21
6.6e-50FFCP PHASE1:Hg19::chr21:44589339..44589372,-#_b46a5896e0ed110a955a939cc7be1c62p@chr21:44589339..44589372, -
6.6e-50FFCP PHASE2:Hg19::chr21:44592842..44592867,-#_b46a5896e0ed110a955a939cc7be1c62p1@CU686889
6.6e-50FFCP PHASE1:Hg19::chr12:132475501..132475504,+#_b46a5896e0ed110a955a939cc7be1c62p@chr12:132475501..132475504, +
6.6e-50FFCP PHASE2:Hg19::chr12:132475501..132475504,+#_b46a5896e0ed110a955a939cc7be1c62p@chr12:132475501..132475504, +
6.6e-50FFCP PHASE2:Hg19::chr21:44589339..44589372,-#_b46a5896e0ed110a955a939cc7be1c62p@chr21:44589339..44589372, -
6.6e-50FFCP PHASE1:Hg19::chr21:44592842..44592867,-#_b46a5896e0ed110a955a939cc7be1c62p1@CU686889
6.27e-44FFCP PHASE1:Hg19::chr11:31827535..31827565,-#_c4ea1b4ef3326fb2ef8dff404a5f2562p11@PAX6
6.27e-44FFCP PHASE2:Hg19::chr11:31827535..31827565,-#_c4ea1b4ef3326fb2ef8dff404a5f2562p11@PAX6
1.92e-41FFCP PHASE1:Hg19::chr3:186262166..186262170,-#_b475215bfe18fa114d531afe7820c39fp1@CRYGS
1.92e-41FFCP PHASE2:Hg19::chr3:186262166..186262170,-#_b475215bfe18fa114d531afe7820c39fp1@CRYGS
4.94e-40FFCP PHASE1:Hg19::chr5:112173525..112173532,+#_458ce48b64dc278dc5d9c7039687f339p@chr5:112173525..112173532, +
4.94e-40FFCP PHASE2:Hg19::chr5:112173525..112173532,+#_458ce48b64dc278dc5d9c7039687f339p@chr5:112173525..112173532, +
1.62e-37FFCP PHASE2:Hg19::chr1:29586692..29586705,+#_6fd334359ce64fd3239ffd32fb52ec2ep7@PTPRU
1.62e-37FFCP PHASE1:Hg19::chr1:29586692..29586705,+#_6fd334359ce64fd3239ffd32fb52ec2ep7@PTPRU
2.1e-35FFCP PHASE1:Hg19::chr14:60975644..60975673,+#_8d2d9d0fff1e94f40b4f115b71af538dp3@SIX6
2.1e-35FFCP PHASE2:Hg19::chr14:60975644..60975673,+#_8d2d9d0fff1e94f40b4f115b71af538dp3@SIX6
6.73e-35FFCP PHASE1:Hg19::chr14:60975871..60975880,+#_5229ea95770d2ba7bafa739e29f783bep4@SIX6
6.73e-35FFCP PHASE2:Hg19::chr14:60975871..60975880,+#_5229ea95770d2ba7bafa739e29f783bep4@SIX6
5.06e-34FFCP PHASE2:Hg19::chr11:31667372..31667383,-#_c056f9e5eabc87024614814e5b107b2cp@chr11:31667372..31667383, -
5.06e-34FFCP PHASE1:Hg19::chr11:31667372..31667383,-#_c056f9e5eabc87024614814e5b107b2cp@chr11:31667372..31667383, -
8.36e-34FFCP PHASE1:Hg19::chr19:1470631..1470648,-#_db08d0d05268d043378a7fb4e8f49ff2p@chr19:1470631..1470648, -
8.36e-34FFCP PHASE2:Hg19::chr19:1470631..1470648,-#_db08d0d05268d043378a7fb4e8f49ff2p@chr19:1470631..1470648, -
5.55e-33FFCP PHASE2:Hg19::chr21:44589135..44589151,+#_6b068f9bb41501225c422f75cdac3980p1@CRYAA
5.55e-33FFCP PHASE1:Hg19::chr21:44589135..44589151,+#_6b068f9bb41501225c422f75cdac3980p1@CRYAA
9.55e-33FFCP PHASE2:Hg19::chr17:27573875..27573878,+#_1b071f8024fdc5bd8f8ed6a2fb3591bcp1@CRYBA1
9.55e-33FFCP PHASE1:Hg19::chr17:27573875..27573878,+#_1b071f8024fdc5bd8f8ed6a2fb3591bcp1@CRYBA1
2.74e-29FFCP PHASE2:Hg19::chr2:45168589..45168601,-#_a3db05f17656888530c071fce9cfa70dp2@ENST00000456467
2.74e-29FFCP PHASE1:Hg19::chr2:45168589..45168601,-#_a3db05f17656888530c071fce9cfa70dp2@ENST00000456467
3.65e-29FFCP PHASE2:Hg19::chr7:107883678..107883689,-#_ff1c9c97999dcfc827ce5aa14d4b9027p13@NRCAM
3.65e-29FFCP PHASE1:Hg19::chr7:107883678..107883689,-#_ff1c9c97999dcfc827ce5aa14d4b9027p13@NRCAM
7.46e-29FFCP PHASE2:Hg19::chr13:114202163..114202178,+#_21d133cb35ee34efde993c98d7aee3fap@chr13:114202163..114202178, +
7.46e-29FFCP PHASE1:Hg19::chr13:114202163..114202178,+#_21d133cb35ee34efde993c98d7aee3fap@chr13:114202163..114202178, +
1.36e-28FFCP PHASE1:Hg19::chr3:173116225..173116242,+#_50c83c05213f66ef129e47ec9de0ba97p10@NLGN1
1.36e-28FFCP PHASE2:Hg19::chr3:173116225..173116242,+#_50c83c05213f66ef129e47ec9de0ba97p10@NLGN1
2.64e-27FFCP PHASE1:Hg19::chr2:45169233..45169244,+#_96e7c13256e91368eb1e6dda81ece19ep10@SIX3
2.64e-27FFCP PHASE2:Hg19::chr2:45169233..45169244,+#_96e7c13256e91368eb1e6dda81ece19ep10@SIX3
8.39e-27FFCP PHASE2:Hg19::chr14:60975858..60975869,+#_df31c956872a434e82f1ab3ce0450414p2@SIX6
8.39e-27FFCP PHASE1:Hg19::chr14:60975858..60975869,+#_df31c956872a434e82f1ab3ce0450414p2@SIX6
5.56e-26FFCP PHASE1:Hg19::chr1:147374915..147374932,+#_aace773b701378e4a9f2e983c30fa86bp1@GJA8
5.56e-26FFCP PHASE1:Hg19::chr20:35861148..35861151,+#_aace773b701378e4a9f2e983c30fa86bp@chr20:35861148..35861151, +
5.56e-26FFCP PHASE2:Hg19::chr1:147374915..147374932,+#_aace773b701378e4a9f2e983c30fa86bp1@GJA8
5.56e-26FFCP PHASE2:Hg19::chr20:35861148..35861151,+#_aace773b701378e4a9f2e983c30fa86bp@chr20:35861148..35861151, +
5.56e-26FFCP PHASE2:Hg19::chr19:40920692..40920700,-#_aace773b701378e4a9f2e983c30fa86bp@chr19:40920692..40920700, -
5.56e-26FFCP PHASE1:Hg19::chr19:40920692..40920700,-#_aace773b701378e4a9f2e983c30fa86bp@chr19:40920692..40920700, -
5.56e-26FFCP PHASE1:Hg19::chr3:150690809..150690822,-#_aace773b701378e4a9f2e983c30fa86bp3@CLRN1
5.56e-26FFCP PHASE2:Hg19::chr9:75848662..75848671,-#_aace773b701378e4a9f2e983c30fa86bp@chr9:75848662..75848671, -
5.56e-26FFCP PHASE2:Hg19::chrX:43587410..43587413,+#_aace773b701378e4a9f2e983c30fa86bp@chrX:43587410..43587413, +
5.56e-26FFCP PHASE2:Hg19::chr3:150690809..150690822,-#_aace773b701378e4a9f2e983c30fa86bp3@CLRN1
5.56e-26FFCP PHASE1:Hg19::chr9:75848662..75848671,-#_aace773b701378e4a9f2e983c30fa86bp@chr9:75848662..75848671, -
5.56e-26FFCP PHASE1:Hg19::chrX:43587410..43587413,+#_aace773b701378e4a9f2e983c30fa86b+, p@chrX:43587410..43587413
7.14e-26FFCP PHASE1:Hg19::chr13:44875179..44875188,-#_fbc5f34e34bd779997da02baaac84af4-, p@chr13:44875179..44875188
7.14e-26FFCP PHASE1:Hg19::chr9:100057272..100057276,+#_fbc5f34e34bd779997da02baaac84af4p@chr9:100057272..100057276, +
7.14e-26FFCP PHASE2:Hg19::chr16:85617064..85617073,-#_fbc5f34e34bd779997da02baaac84af4p@chr16:85617064..85617073, -
7.14e-26FFCP PHASE2:Hg19::chr13:44875179..44875188,-#_fbc5f34e34bd779997da02baaac84af4p@chr13:44875179..44875188, -
7.14e-26FFCP PHASE1:Hg19::chr7:123198284..123198329,-#_fbc5f34e34bd779997da02baaac84af4p3@NDUFA5
7.14e-26FFCP PHASE2:Hg19::chr20:33903184..33903189,-#_fbc5f34e34bd779997da02baaac84af4p11@UQCC
7.14e-26FFCP PHASE1:Hg19::chr4:140656282..140656285,-#_fbc5f34e34bd779997da02baaac84af4p@chr4:140656282..140656285, -
7.14e-26FFCP PHASE2:Hg19::chr19:41727698..41727705,+#_fbc5f34e34bd779997da02baaac84af4p@chr19:41727698..41727705, +
7.14e-26FFCP PHASE1:Hg19::chr19:17137781..17137792,-#_fbc5f34e34bd779997da02baaac84af4p6@CPAMD8
7.14e-26FFCP PHASE2:Hg19::chr7:123198284..123198329,-#_fbc5f34e34bd779997da02baaac84af4p3@NDUFA5
7.14e-26FFCP PHASE2:Hg19::chr2:45154282..45154288,-#_fbc5f34e34bd779997da02baaac84af4p@chr2:45154282..45154288, -
7.14e-26FFCP PHASE2:Hg19::chr13:72440726..72440736,-#_fbc5f34e34bd779997da02baaac84af4p19@DACH1
7.14e-26FFCP PHASE1:Hg19::chr2:45154282..45154288,-#_fbc5f34e34bd779997da02baaac84af4p@chr2:45154282..45154288, -
7.14e-26FFCP PHASE1:Hg19::chr21:44592750..44592758,-#_fbc5f34e34bd779997da02baaac84af4p4@CU686889
7.14e-26FFCP PHASE2:Hg19::chr19:17137781..17137792,-#_fbc5f34e34bd779997da02baaac84af4p6@CPAMD8
7.14e-26FFCP PHASE1:Hg19::chr11:65361417..65361421,-#_fbc5f34e34bd779997da02baaac84af4p2@KCNK7
7.14e-26FFCP PHASE1:Hg19::chr5:124468141..124468176,-#_fbc5f34e34bd779997da02baaac84af4p@chr5:124468141..124468176, -
7.14e-26FFCP PHASE1:Hg19::chr1:45769711..45769721,-#_fbc5f34e34bd779997da02baaac84af4p@chr1:45769711..45769721, -
7.14e-26FFCP PHASE1:Hg19::chr5:45038620..45038622,+#_fbc5f34e34bd779997da02baaac84af4p@chr5:45038620..45038622, +
7.14e-26FFCP PHASE2:Hg19::chr21:44592512..44592521,+#_fbc5f34e34bd779997da02baaac84af4+, p@chr21:44592512..44592521
7.14e-26FFCP PHASE2:Hg19::chr2:10538258..10538282,+#_fbc5f34e34bd779997da02baaac84af4p@chr2:10538258..10538282, +
7.14e-26FFCP PHASE2:Hg19::chr10:73406056..73406065,+#_fbc5f34e34bd779997da02baaac84af4p@chr10:73406056..73406065, +
7.14e-26FFCP PHASE1:Hg19::chr20:33903184..33903189,-#_fbc5f34e34bd779997da02baaac84af4p11@UQCC
7.14e-26FFCP PHASE1:Hg19::chr21:44592358..44592365,+#_fbc5f34e34bd779997da02baaac84af4p@chr21:44592358..44592365, +
7.14e-26FFCP PHASE2:Hg19::chr1:86064794..86064797,+#_fbc5f34e34bd779997da02baaac84af4p1@ENST00000426794
7.14e-26FFCP PHASE2:Hg19::chr4:140656282..140656285,-#_fbc5f34e34bd779997da02baaac84af4-, p@chr4:140656282..140656285
7.14e-26FFCP PHASE2:Hg19::chr1:115873480..115873484,+#_fbc5f34e34bd779997da02baaac84af4p@chr1:115873480..115873484, +
7.14e-26FFCP PHASE1:Hg19::chr21:44592788..44592807,+#_fbc5f34e34bd779997da02baaac84af4p@chr21:44592788..44592807, +
7.14e-26FFCP PHASE1:Hg19::chr1:86064794..86064797,+#_fbc5f34e34bd779997da02baaac84af4p1@ENST00000426794
7.14e-26FFCP PHASE1:Hg19::chr1:115873480..115873484,+#_fbc5f34e34bd779997da02baaac84af4p@chr1:115873480..115873484, +
7.14e-26FFCP PHASE2:Hg19::chr16:17563573..17563582,+#_fbc5f34e34bd779997da02baaac84af4p@chr16:17563573..17563582, +
7.14e-26FFCP PHASE1:Hg19::chr2:693025..693036,+#_fbc5f34e34bd779997da02baaac84af4p@chr2:693025..693036, +
7.14e-26FFCP PHASE2:Hg19::chr9:100057272..100057276,+#_fbc5f34e34bd779997da02baaac84af4p@chr9:100057272..100057276, +
7.14e-26FFCP PHASE1:Hg19::chr2:10538258..10538282,+#_fbc5f34e34bd779997da02baaac84af4p@chr2:10538258..10538282, +