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UBERON:0005863

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Name:cartilaginous condensation
Namespace:FANTOM
Definition:"Cell condensation that is an aggregation of mesenchymal cells that are committed to differentiate into chondroblasts and chondrocytes." [GO:curator]
Xrefs:
links:

AEO:0000147
EHDAA2:0003147
EMAPA:25353
VSAO:0000092

XAO:0004022
Synonyms: "cartilage condensation" EXACT [EMAPA:25353]
"cartilagenous condensation" EXACT [EHDAA2:0003147]
"chondrogenic condensation" EXACT [VSAO:0000092]
Comments:AO notes: isa cell condensation in VSAO

Ontology association
Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.

link to ontology dataset
data


Parents

is_a:UBERON:0005856(developing mesenchymal condensation)
develops_from:UBERON:0005866(pre-cartilage condensation)
part_of:UBERON:0004288(skeleton)



Children

is a:UBERON:0010351 (otic capsule cartilage condensation),UBERON:0010881 (limb cartilage element),UBERON:0011094 (vertebra cartilage element)
develops from:UBERON:0002513 (endochondral bone),UBERON:0007844 (cartilage element)

Ontology Tree: Loaded from BioPortal


FF samples
It includes FANTOM5 samples that overlay the Uberon ontology




Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0005863 (cartilaginous condensation), sorted by p-values
Analyst: Hideya Kawaji

link to source dataset
human : data
mouse : data


P-valueFFCPShort description
1.25e-162FFCP PHASE2:Hg19::chr3:174737010..174737023,+#_d3c8c30b8bf80c9ac74da813d90d359cp@chr3:174737010..174737023, +
1.25e-162FFCP PHASE1:Hg19::chr3:174737010..174737023,+#_d3c8c30b8bf80c9ac74da813d90d359cp@chr3:174737010..174737023, +
3.92e-140FFCP PHASE2:Hg19::chr20:21687193..21687206,+#_7b278fa28041caa733042d81e873a948p4@PAX1
3.92e-140FFCP PHASE1:Hg19::chr20:21687193..21687206,+#_7b278fa28041caa733042d81e873a948p4@PAX1
4.22e-99FFCP PHASE2:Hg19::chr5:30104176..30104187,-#_7e67bccfb0785d4bb13ac20fc92050e4p@chr5:30104176..30104187, -
4.22e-99FFCP PHASE1:Hg19::chr5:30104176..30104187,-#_7e67bccfb0785d4bb13ac20fc92050e4p@chr5:30104176..30104187, -
1.06e-78FFCP PHASE2:Hg19::chr4:13546130..13546145,-#_262f9266e3fade3754a6a775e95b2cb1p4@NKX3-2
1.06e-78FFCP PHASE1:Hg19::chr4:13546130..13546145,-#_262f9266e3fade3754a6a775e95b2cb1p4@NKX3-2
2.52e-71FFCP PHASE1:Hg19::chr9:114135497..114135526,-#_4423d26b775016a12c87a4310aa8f7fbp@chr9:114135497..114135526, -
2.52e-71FFCP PHASE2:Hg19::chr9:114135497..114135526,-#_4423d26b775016a12c87a4310aa8f7fbp@chr9:114135497..114135526, -
7.4e-71FFCP PHASE2:Hg19::chr2:241897125..241897142,-#_3bfbcd3ba829224721796d41667629e8p@chr2:241897125..241897142, -
7.4e-71FFCP PHASE1:Hg19::chr2:241897125..241897142,-#_3bfbcd3ba829224721796d41667629e8p@chr2:241897125..241897142, -
6.33e-70FFCP PHASE1:Hg19::chr3:80727046..80727051,-#_22ceb83214f1164104aeaca35ee9bc3ep@chr3:80727046..80727051, -
6.33e-70FFCP PHASE2:Hg19::chr3:80727046..80727051,-#_22ceb83214f1164104aeaca35ee9bc3ep@chr3:80727046..80727051, -
4.8e-67FFCP PHASE1:Hg19::chr2:242004292..242004308,+#_3916daa5a898784f919375156213602dp15@SNED1
4.8e-67FFCP PHASE2:Hg19::chr2:242004292..242004308,+#_3916daa5a898784f919375156213602dp15@SNED1
1.24e-66FFCP PHASE2:Hg19::chr1:19811132..19811155,-#_039d6c907fde5b9c31d545b8af88a554p20@CAPZB
1.24e-66FFCP PHASE1:Hg19::chr1:19811132..19811155,-#_039d6c907fde5b9c31d545b8af88a554p20@CAPZB
1.26e-62FFCP PHASE1:Hg19::chr1:19778678..19778689,-#_752bc986377142cf48f5751902bc8ad0p@chr1:19778678..19778689, -
1.26e-62FFCP PHASE2:Hg19::chr1:19778678..19778689,-#_752bc986377142cf48f5751902bc8ad0-, p@chr1:19778678..19778689
1.1e-59FFCP PHASE2:Hg19::chr2:241897189..241897221,-#_7db2883ae2da6e5f51efe5ff655e9cbap@chr2:241897189..241897221, -
1.1e-59FFCP PHASE1:Hg19::chr2:241897189..241897221,-#_7db2883ae2da6e5f51efe5ff655e9cbap@chr2:241897189..241897221, -
1.55e-57FFCP PHASE1:Hg19::chr14:23574186..23574212,-#_1049fbea4fdb7b22baac6f5ca4f978a3p1@uc010aki.1
1.55e-57FFCP PHASE2:Hg19::chr14:23574186..23574212,-#_1049fbea4fdb7b22baac6f5ca4f978a3p1@uc010aki.1
4.09e-56FFCP PHASE2:Hg19::chr14:61190754..61190776,-#_43d20653698668bf10020e2e46cfe629p6@SIX4
4.09e-56FFCP PHASE1:Hg19::chr14:61190754..61190776,-#_43d20653698668bf10020e2e46cfe629p6@SIX4
3.74e-53FFCP PHASE2:Hg19::chr14:23574164..23574179,-#_64cb10fd11653a1b3b804e30c52ac9bcp3@uc010aki.1
3.74e-53FFCP PHASE1:Hg19::chr14:23574164..23574179,-#_64cb10fd11653a1b3b804e30c52ac9bcp3@uc010aki.1
1.15e-51FFCP PHASE2:Hg19::chr20:21687260..21687270,+#_7d2d430c8aea822d71775024cde64828p3@PAX1
1.15e-51FFCP PHASE1:Hg19::chr20:21687260..21687270,+#_7d2d430c8aea822d71775024cde64828p3@PAX1
2.3e-51FFCP PHASE1:Hg19::chr10:81923378..81923389,-#_91bb17c555e47d4b9f01cdaf7a81344fp@chr10:81923378..81923389, -
2.3e-51FFCP PHASE2:Hg19::chr10:81923378..81923389,-#_91bb17c555e47d4b9f01cdaf7a81344fp@chr10:81923378..81923389, -
3.24e-51FFCP PHASE2:Hg19::chr2:12248310..12248334,-#_92c561294825e2aa8c67c44e76ad79b6p@chr2:12248310..12248334, -
3.24e-51FFCP PHASE1:Hg19::chr2:12248310..12248334,-#_92c561294825e2aa8c67c44e76ad79b6p@chr2:12248310..12248334, -
8.0e-51FFCP PHASE1:Hg19::chr7:18832913..18832946,+#_aeee3ce09e52d405fda1bc968ec0e4f3p19@HDAC9
8.0e-51FFCP PHASE2:Hg19::chr7:18832913..18832946,+#_aeee3ce09e52d405fda1bc968ec0e4f3p19@HDAC9
5.06e-49FFCP PHASE1:Hg19::chr7:158224707..158224729,-#_188e4c8a5667181c923379c12fd5df9a-, p@chr7:158224707..158224729
5.06e-49FFCP PHASE2:Hg19::chr7:158224707..158224729,-#_188e4c8a5667181c923379c12fd5df9ap@chr7:158224707..158224729, -
5.24e-48FFCP PHASE2:Hg19::chr1:65888177..65888194,+#_9fe1af5f9ec82762373521ced50647ae+, p@chr1:65888177..65888194
5.24e-48FFCP PHASE1:Hg19::chr1:65888177..65888194,+#_9fe1af5f9ec82762373521ced50647aep@chr1:65888177..65888194, +
2.98e-45FFCP PHASE2:Hg19::chr4:13546583..13546593,-#_278dc525c4a64d017c9ef011c9d6de03p3@NKX3-2
2.98e-45FFCP PHASE1:Hg19::chr4:13546583..13546593,-#_278dc525c4a64d017c9ef011c9d6de03p3@NKX3-2
2.92e-44FFCP PHASE2:Hg19::chr1:78695274..78695292,+#_fbd69ef9c27e0529e7f0b06813030f8ap1@MGC27382
2.92e-44FFCP PHASE1:Hg19::chr1:78695274..78695292,+#_fbd69ef9c27e0529e7f0b06813030f8ap1@MGC27382
5.38e-44FFCP PHASE1:Mm9::chr1:24217213..24217226,+#_97e3998b0bc149bdc348b4f23eac95b1p@chr1:24217213..24217226, +
5.38e-44FFCP PHASE2:Mm9::chr1:24217213..24217226,+#_97e3998b0bc149bdc348b4f23eac95b1p@chr1:24217213..24217226, +
1.71e-43FFCP PHASE2:Hg19::chr7:18832834..18832859,+#_a6b87134b1e96d85ea5ab4ad74b8ec96p18@HDAC9
1.71e-43FFCP PHASE1:Hg19::chr7:18832834..18832859,+#_a6b87134b1e96d85ea5ab4ad74b8ec96p18@HDAC9
1.48e-40FFCP PHASE1:Hg19::chr13:24914614..24914622,-#_e1bcf2662554f5b39e147f41f863d866p@chr13:24914614..24914622, -
1.48e-40FFCP PHASE1:Hg19::chr9:33028063..33028067,-#_e1bcf2662554f5b39e147f41f863d866p@chr9:33028063..33028067, -
1.48e-40FFCP PHASE2:Hg19::chr13:24914614..24914622,-#_e1bcf2662554f5b39e147f41f863d866p@chr13:24914614..24914622, -
1.48e-40FFCP PHASE2:Hg19::chr9:33028063..33028067,-#_e1bcf2662554f5b39e147f41f863d866-, p@chr9:33028063..33028067
1.64e-40FFCP PHASE2:Hg19::chr20:21686317..21686350,+#_ce08d5b3c4f33d8752171bc87df3fe99p1@PAX1
1.64e-40FFCP PHASE1:Hg19::chr20:21686317..21686350,+#_ce08d5b3c4f33d8752171bc87df3fe99p1@PAX1
1.81e-40FFCP PHASE1:Hg19::chr1:78769549..78769554,+#_24fbf37be4e68b2fb22aacbb81b42819p5@PTGFR
1.81e-40FFCP PHASE2:Hg19::chr1:78769549..78769554,+#_24fbf37be4e68b2fb22aacbb81b42819p5@PTGFR
2.13e-40FFCP PHASE2:Hg19::chr2:241897363..241897398,+#_f53fa37e227e869dd795cf1d39638ec0p@chr2:241897363..241897398, +
2.13e-40FFCP PHASE1:Hg19::chr2:241897363..241897398,+#_f53fa37e227e869dd795cf1d39638ec0p@chr2:241897363..241897398, +
3.04e-39FFCP PHASE2:Hg19::chr20:21686290..21686311,+#_dc556991370b8d5316a95c20b2e09be2p2@PAX1
3.04e-39FFCP PHASE1:Hg19::chr20:21686290..21686311,+#_dc556991370b8d5316a95c20b2e09be2p2@PAX1
7.19e-39FFCP PHASE1:Hg19::chr7:18832759..18832786,+#_fcec2bbbca5207018168b8e174bac8b8p16@HDAC9
7.19e-39FFCP PHASE2:Hg19::chr5:140887761..140887777,+#_fcec2bbbca5207018168b8e174bac8b8p@chr5:140887761..140887777, +
7.19e-39FFCP PHASE2:Hg19::chr7:18832759..18832786,+#_fcec2bbbca5207018168b8e174bac8b8p16@HDAC9
7.19e-39FFCP PHASE1:Hg19::chr5:140887761..140887777,+#_fcec2bbbca5207018168b8e174bac8b8p@chr5:140887761..140887777, +
1.24e-38FFCP PHASE2:Hg19::chr4:77068930..77068959,-#_703d77471582c357ded608e4285e6bd8p4@NUP54
1.24e-38FFCP PHASE1:Hg19::chr4:77068930..77068959,-#_703d77471582c357ded608e4285e6bd8p4@NUP54
2.08e-38FFCP PHASE2:Hg19::chr2:241938405..241938416,+#_b1b30ef4752dc53b1f2bb2158121a3ecp@chr2:241938405..241938416, +
2.08e-38FFCP PHASE1:Hg19::chr2:241938405..241938416,+#_b1b30ef4752dc53b1f2bb2158121a3ecp@chr2:241938405..241938416, +
3.34e-38FFCP PHASE1:Hg19::chr4:13546632..13546662,-#_26ced0669f3353ddf99cae2b18f776e7p1@NKX3-2
3.34e-38FFCP PHASE2:Hg19::chr4:13546632..13546662,-#_26ced0669f3353ddf99cae2b18f776e7p1@NKX3-2
3.68e-38FFCP PHASE2:Hg19::chr6:158490457..158490470,+#_4b1af4da4e0ff2b0c76aed388ee85cb6p10@SYNJ2
3.68e-38FFCP PHASE1:Hg19::chr6:158490457..158490470,+#_4b1af4da4e0ff2b0c76aed388ee85cb6p10@SYNJ2
5.39e-38FFCP PHASE2:Hg19::chr9:16138889..16138902,-#_5a3b5ff82901d2b178a611c6c17c4c56p@chr9:16138889..16138902, -
5.39e-38FFCP PHASE1:Hg19::chr9:16138889..16138902,-#_5a3b5ff82901d2b178a611c6c17c4c56p@chr9:16138889..16138902, -
8.66e-38FFCP PHASE1:Hg19::chr8:78311303..78311320,+#_59aba099424ccde806ce77b577853d79p2@ENST00000518706
8.66e-38FFCP PHASE2:Hg19::chr8:78311303..78311320,+#_59aba099424ccde806ce77b577853d79p2@ENST00000518706
2.96e-37FFCP PHASE2:Hg19::chr21:39705383..39705394,-#_2cada9de0c09aca578c0503a48712aaep1@ENST00000436845
2.96e-37FFCP PHASE1:Hg19::chr21:39705383..39705394,-#_2cada9de0c09aca578c0503a48712aaep1@ENST00000436845
6.92e-37FFCP PHASE2:Hg19::chr9:123239747..123239765,-#_3565843cc6b81f98d202b4da9a20c295p12@CDK5RAP2
6.92e-37FFCP PHASE1:Hg19::chr9:123239747..123239765,-#_3565843cc6b81f98d202b4da9a20c295p12@CDK5RAP2
3.28e-36FFCP PHASE1:Hg19::chr1:78695298..78695311,+#_4cd9cf5d35369d77e3ad4eddd4549418p1@ENST00000413519
3.28e-36FFCP PHASE2:Hg19::chr1:78695298..78695311,+#_4cd9cf5d35369d77e3ad4eddd4549418p1@ENST00000413519
9.62e-35FFCP PHASE1:Hg19::chr14:37126814..37126834,+#_59085aef698c0b3faed92227b966394cp4@PAX9
9.62e-35FFCP PHASE2:Hg19::chr14:37126814..37126834,+#_59085aef698c0b3faed92227b966394cp4@PAX9
1.8e-34FFCP PHASE2:Hg19::chr7:100202784..100202796,-#_bf44bb90686d707320f9fd8a89ba302dp@chr7:100202784..100202796, -
1.8e-34FFCP PHASE1:Hg19::chr7:100202784..100202796,-#_bf44bb90686d707320f9fd8a89ba302dp@chr7:100202784..100202796, -
3.69e-34FFCP PHASE1:Hg19::chr12:54422268..54422278,+#_4d5a54f14c7e21f8d9564a612195048bp8@HOXC6
3.69e-34FFCP PHASE2:Hg19::chr12:54422268..54422278,+#_4d5a54f14c7e21f8d9564a612195048bp8@HOXC6
5.52e-34FFCP PHASE2:Hg19::chr11:60610073..60610090,+#_1cd72b56f4dfd8ed83b6cc8e299a5d9ap6@CCDC86
5.52e-34FFCP PHASE1:Hg19::chr11:60610073..60610090,+#_1cd72b56f4dfd8ed83b6cc8e299a5d9ap6@CCDC86
1.43e-33FFCP PHASE2:Hg19::chr20:21695435..21695452,+#_6b0ea815dac95610cdafeac87c8ad7a9p@chr20:21695435..21695452, +
1.43e-33FFCP PHASE1:Hg19::chr20:21695435..21695452,+#_6b0ea815dac95610cdafeac87c8ad7a9p@chr20:21695435..21695452, +
2.03e-33FFCP PHASE2:Mm9::chr15:78817557..78817567,+#_0026351f073251eb89828f43c84d7e04p@chr15:78817557..78817567, +
2.03e-33FFCP PHASE1:Mm9::chr15:78817557..78817567,+#_0026351f073251eb89828f43c84d7e04p@chr15:78817557..78817567, +
3.37e-33FFCP PHASE2:Mm9::chr11:77624716..77624729,+#_9788a2a8760ddf7fae167e24330f985dp26@Myo18a
3.37e-33FFCP PHASE1:Mm9::chr11:77624716..77624729,+#_9788a2a8760ddf7fae167e24330f985dp26@Myo18a
4.33e-33FFCP PHASE1:Mm9::chr9:21934585..21934591,-#_76fb9ca9ca9a088054ee18f3ddc66009p@chr9:21934585..21934591, -
4.33e-33FFCP PHASE2:Mm9::chr9:21934585..21934591,-#_76fb9ca9ca9a088054ee18f3ddc66009p@chr9:21934585..21934591, -
4.33e-33FFCP PHASE1:Mm9::chr2:32482372..32482381,+#_76fb9ca9ca9a088054ee18f3ddc66009p@chr2:32482372..32482381, +
4.33e-33FFCP PHASE2:Mm9::chr8:75097542..75097549,+#_76fb9ca9ca9a088054ee18f3ddc66009p@chr8:75097542..75097549, +