Personal tools

UBERON:0005882

From FANTOM5_SSTAR

Jump to: navigation, search

Name:neural tube alar plate
Namespace:FANTOM
Definition:"the mantle layer of the neural tube that lies dorsal to the sulcus limitans and contains primarily sensory neurons and interneurons involved in communication of sensory impulses." [MP:0009692, Wikipedia:Alar_plate]
Xrefs:
links:
[ Gray646.png Gray646.png]
Synonyms: "alar lamina" RELATED [Wikipedia:Alar_lamina]
"lamina alaris" RELATED [Wikipedia:Alar_lamina]
"lamina dorsolateralis" RELATED [Wikipedia:Alar_lamina]
"lamina dorsolateralis; lamina alaris" RELATED LATIN [Wikipedia:Alar_plate]

Ontology association
Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.

link to ontology dataset
data


Parents

is_a:UBERON:0005423(developing anatomical structure)
part_of:UBERON:0004061(neural tube mantle layer)



Children

develops from:UBERON:0002314 (midbrain tectum)

Ontology Tree: Loaded from BioPortal


FF samples
It includes FANTOM5 samples that overlay the Uberon ontology




Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0005882 (neural tube alar plate), sorted by p-values
Analyst: Hideya Kawaji

link to source dataset
human : data
mouse : data


P-valueFFCPShort description
7.47e-44FFCP PHASE1:Mm9::chr1:158200818..158200829,-#_f67d635f5db3c21423e5967964bf235ap@chr1:158200818..158200829, -
7.47e-44FFCP PHASE2:Mm9::chr1:158200818..158200829,-#_f67d635f5db3c21423e5967964bf235ap@chr1:158200818..158200829, -
2.87e-30FFCP PHASE1:Mm9::chr1:155500060..155500061,+#_3186927f45dd50e1727453b8fdee8dc1p19@Rgs8
2.87e-30FFCP PHASE1:Mm9::chr15:22719411..22719436,+#_3186927f45dd50e1727453b8fdee8dc1p@chr15:22719411..22719436, +
2.87e-30FFCP PHASE2:Mm9::chr1:155500060..155500061,+#_3186927f45dd50e1727453b8fdee8dc1p19@Rgs8
2.87e-30FFCP PHASE2:Mm9::chr15:22719411..22719436,+#_3186927f45dd50e1727453b8fdee8dc1+, p@chr15:22719411..22719436
3.06e-23FFCP PHASE2:Mm9::chr2:127098489..127098493,-#_05fd140d4ea80ef2e3abda0e51425388p@chr2:127098489..127098493, -
3.06e-23FFCP PHASE1:Mm9::chr2:127098489..127098493,-#_05fd140d4ea80ef2e3abda0e51425388p@chr2:127098489..127098493, -
5.07e-23FFCP PHASE2:Mm9::chr16:96721083..96721092,+#_05745ac91b5c851f57d4d65c5c8a2a21p@chr16:96721083..96721092, +
5.07e-23FFCP PHASE2:Mm9::chr2:158208771..158208772,+#_05745ac91b5c851f57d4d65c5c8a2a21p@chr2:158208771..158208772, +
5.07e-23FFCP PHASE1:Mm9::chr2:158208771..158208772,+#_05745ac91b5c851f57d4d65c5c8a2a21p@chr2:158208771..158208772, +
5.07e-23FFCP PHASE1:Mm9::chr16:96721083..96721092,+#_05745ac91b5c851f57d4d65c5c8a2a21p@chr16:96721083..96721092, +
8.39e-23FFCP PHASE1:Mm9::chr6:20963159..20963195,-#_ad5b694dddb2697c6cb753cdb48bb331p1@ENSMUST00000157206
8.39e-23FFCP PHASE2:Mm9::chr6:20963159..20963195,-#_ad5b694dddb2697c6cb753cdb48bb331p1@ENSMUST00000157206
1.39e-22FFCP PHASE1:Mm9::chr6:119367617..119367641,-#_4da087f05866eb6401eb25d85b06361ep7@Adipor2
1.39e-22FFCP PHASE2:Mm9::chr6:119367617..119367641,-#_4da087f05866eb6401eb25d85b06361ep7@Adipor2
5.15e-19FFCP PHASE1:Mm9::chr14:52528327..52528336,-#_5c68ddc8bc3bab1dbb26bb7c7dbd4176p@chr14:52528327..52528336, -
5.15e-19FFCP PHASE2:Mm9::chr14:52528327..52528336,-#_5c68ddc8bc3bab1dbb26bb7c7dbd4176p@chr14:52528327..52528336, -
7.74e-19FFCP PHASE1:Mm9::chr19:32177340..32177351,-#_0cb0591ddffc5e701c1a1fd02a54d1c5p@chr19:32177340..32177351, -
7.74e-19FFCP PHASE2:Mm9::chr19:32177340..32177351,-#_0cb0591ddffc5e701c1a1fd02a54d1c5p@chr19:32177340..32177351, -
1.16e-18FFCP PHASE2:Mm9::chr4:98216369..98216408,+#_3cd590d293544011751c7b1cb5809670p@chr4:98216369..98216408, +
1.16e-18FFCP PHASE2:Mm9::chr4:83035887..83035924,-#_3cd590d293544011751c7b1cb5809670p@chr4:83035887..83035924, -
1.16e-18FFCP PHASE1:Mm9::chr4:83035887..83035924,-#_3cd590d293544011751c7b1cb5809670p@chr4:83035887..83035924, -
1.16e-18FFCP PHASE1:Mm9::chr4:98216369..98216408,+#_3cd590d293544011751c7b1cb5809670p@chr4:98216369..98216408, +
1.74e-18FFCP PHASE1:Mm9::chr8:123151369..123151375,+#_9a994076ebe7c8a3941ab7f0a3df38b5p@chr8:123151369..123151375, +
1.74e-18FFCP PHASE2:Mm9::chr8:123151369..123151375,+#_9a994076ebe7c8a3941ab7f0a3df38b5p@chr8:123151369..123151375, +
2.59e-18FFCP PHASE1:Mm9::chr8:108091532..108091548,-#_386e7db4a73736247585c6b8373a9dfdp@chr8:108091532..108091548, -
2.59e-18FFCP PHASE2:Mm9::chr8:108091532..108091548,-#_386e7db4a73736247585c6b8373a9dfdp@chr8:108091532..108091548, -
2.59e-18FFCP PHASE2:Mm9::chr5:128949415..128949424,+#_386e7db4a73736247585c6b8373a9dfdp@chr5:128949415..128949424, +
2.59e-18FFCP PHASE2:Mm9::chr8:108734860..108734874,+#_386e7db4a73736247585c6b8373a9dfdp3@Prmt7
2.59e-18FFCP PHASE1:Mm9::chr8:108734860..108734874,+#_386e7db4a73736247585c6b8373a9dfdp3@Prmt7
2.59e-18FFCP PHASE1:Mm9::chr5:128949415..128949424,+#_386e7db4a73736247585c6b8373a9dfdp@chr5:128949415..128949424, +
6.79e-16FFCP PHASE2:Mm9::chr1:101686777..101686780,+#_2486390bc7ce34429732646f149a1846p@chr1:101686777..101686780, +
6.79e-16FFCP PHASE1:Mm9::chr1:101686777..101686780,+#_2486390bc7ce34429732646f149a1846p@chr1:101686777..101686780, +
9.51e-16FFCP PHASE2:Mm9::chr9:113701949..113701960,+#_ebd062faa79201fa15f934b1c1ababb2p9@Clasp2
9.51e-16FFCP PHASE2:Mm9::chr17:69476739..69476749,+#_ebd062faa79201fa15f934b1c1ababb2p@chr17:69476739..69476749, +
9.51e-16FFCP PHASE1:Mm9::chr6:120043366..120043377,+#_ebd062faa79201fa15f934b1c1ababb2p3@Ninj2
9.51e-16FFCP PHASE1:Mm9::chr9:113701949..113701960,+#_ebd062faa79201fa15f934b1c1ababb2p9@Clasp2
9.51e-16FFCP PHASE1:Mm9::chr17:69476739..69476749,+#_ebd062faa79201fa15f934b1c1ababb2p@chr17:69476739..69476749, +
9.51e-16FFCP PHASE2:Mm9::chr10:115580937..115580958,+#_ebd062faa79201fa15f934b1c1ababb2p6@Ptprr
9.51e-16FFCP PHASE1:Mm9::chr10:115580937..115580958,+#_ebd062faa79201fa15f934b1c1ababb2p6@Ptprr
9.51e-16FFCP PHASE2:Mm9::chr6:120043366..120043377,+#_ebd062faa79201fa15f934b1c1ababb2p3@Ninj2
1.33e-15FFCP PHASE1:Mm9::chr11:67466144..67466155,+#_9f702ba925ddde8d5bfc2e8bc8f0a417p19@Gas7
1.33e-15FFCP PHASE2:Mm9::chr11:67466144..67466155,+#_9f702ba925ddde8d5bfc2e8bc8f0a417p19@Gas7
1.86e-15FFCP PHASE1:Mm9::chr19:47099743..47099759,+#_8c1f13667bf7ba2dd05d7d5ad30157bbp@chr19:47099743..47099759, +
1.86e-15FFCP PHASE2:Mm9::chr17:8492594..8492603,-#_8c1f13667bf7ba2dd05d7d5ad30157bbp@chr17:8492594..8492603, -
1.86e-15FFCP PHASE1:Mm9::chr17:8492594..8492603,-#_8c1f13667bf7ba2dd05d7d5ad30157bbp@chr17:8492594..8492603, -
1.86e-15FFCP PHASE1:Mm9::chr14:33139881..33139891,+#_8c1f13667bf7ba2dd05d7d5ad30157bbp@chr14:33139881..33139891, +
1.86e-15FFCP PHASE2:Mm9::chr5:125342666..125342671,-#_8c1f13667bf7ba2dd05d7d5ad30157bbp15@Ccdc92
1.86e-15FFCP PHASE1:Mm9::chr10:111706834..111706844,+#_8c1f13667bf7ba2dd05d7d5ad30157bbp@chr10:111706834..111706844, +
1.86e-15FFCP PHASE2:Mm9::chr14:33139881..33139891,+#_8c1f13667bf7ba2dd05d7d5ad30157bbp@chr14:33139881..33139891, +
1.86e-15FFCP PHASE2:Mm9::chr12:104552967..104552983,-#_8c1f13667bf7ba2dd05d7d5ad30157bbp1@uc007ovb.1
1.86e-15FFCP PHASE1:Mm9::chr11:55886412..55886420,+#_8c1f13667bf7ba2dd05d7d5ad30157bb+, p@chr11:55886412..55886420
1.86e-15FFCP PHASE2:Mm9::chr10:111706834..111706844,+#_8c1f13667bf7ba2dd05d7d5ad30157bbp@chr10:111706834..111706844, +
1.86e-15FFCP PHASE1:Mm9::chr5:125342666..125342671,-#_8c1f13667bf7ba2dd05d7d5ad30157bbp15@Ccdc92
1.86e-15FFCP PHASE2:Mm9::chr11:55886412..55886420,+#_8c1f13667bf7ba2dd05d7d5ad30157bbp@chr11:55886412..55886420, +
1.86e-15FFCP PHASE1:Mm9::chr12:104552967..104552983,-#_8c1f13667bf7ba2dd05d7d5ad30157bbp1@uc007ovb.1
1.86e-15FFCP PHASE2:Mm9::chr19:47099743..47099759,+#_8c1f13667bf7ba2dd05d7d5ad30157bbp@chr19:47099743..47099759, +
3.62e-14FFCP PHASE2:Mm9::chr19:55972431..55972440,+#_23035eaa9c3de461afea0e2f80d4add5p63@Tcf7l2
3.62e-14FFCP PHASE1:Mm9::chr19:55972431..55972440,+#_23035eaa9c3de461afea0e2f80d4add5p63@Tcf7l2
3.62e-14FFCP PHASE2:Mm9::chr16:96720848..96720858,+#_23035eaa9c3de461afea0e2f80d4add5p@chr16:96720848..96720858, +
3.62e-14FFCP PHASE1:Mm9::chr16:96720848..96720858,+#_23035eaa9c3de461afea0e2f80d4add5p@chr16:96720848..96720858, +
4.85e-14FFCP PHASE2:Mm9::chr14:93478934..93478944,-#_ef50817acc3c71b02705021899993ff9p@chr14:93478934..93478944, -
4.85e-14FFCP PHASE1:Mm9::chr14:93478934..93478944,-#_ef50817acc3c71b02705021899993ff9p@chr14:93478934..93478944, -
6.5e-14FFCP PHASE2:Mm9::chr2:157163160..157163163,-#_ca3f2ed6fc3043fd75f9de2b3a37396cp2@Ghrh
6.5e-14FFCP PHASE1:Mm9::chr2:157163160..157163163,-#_ca3f2ed6fc3043fd75f9de2b3a37396cp2@Ghrh
8.69e-14FFCP PHASE2:Mm9::chr10:19891807..19891818,+#_5bb4290c95efab3d6c117825f55c9188p@chr10:19891807..19891818, +
8.69e-14FFCP PHASE2:Mm9::chr1:6477452..6477459,+#_5bb4290c95efab3d6c117825f55c9188p8@St18
8.69e-14FFCP PHASE1:Mm9::chr10:19891807..19891818,+#_5bb4290c95efab3d6c117825f55c9188p@chr10:19891807..19891818, +
8.69e-14FFCP PHASE2:Mm9::chr13:97841389..97841402,+#_5bb4290c95efab3d6c117825f55c9188p7@Fam169a
8.69e-14FFCP PHASE1:Mm9::chr1:6477452..6477459,+#_5bb4290c95efab3d6c117825f55c9188p8@St18
8.69e-14FFCP PHASE1:Mm9::chr13:97841389..97841402,+#_5bb4290c95efab3d6c117825f55c9188p7@Fam169a
8.69e-14FFCP PHASE1:Mm9::chr2:31133553..31133564,+#_5bb4290c95efab3d6c117825f55c9188+, p@chr2:31133553..31133564
8.69e-14FFCP PHASE2:Mm9::chr2:31133553..31133564,+#_5bb4290c95efab3d6c117825f55c9188p@chr2:31133553..31133564, +
1.16e-13FFCP PHASE2:Mm9::chr9:103085667..103085678,+#_24f5cde9bd4a1fd0f5285919f035a7b8p@chr9:103085667..103085678, +
1.16e-13FFCP PHASE2:Mm9::chr10:3557489..3557496,-#_24f5cde9bd4a1fd0f5285919f035a7b8p9@Oprm1
1.16e-13FFCP PHASE1:Mm9::chr9:103085667..103085678,+#_24f5cde9bd4a1fd0f5285919f035a7b8p@chr9:103085667..103085678, +
1.16e-13FFCP PHASE1:Mm9::chr10:3557489..3557496,-#_24f5cde9bd4a1fd0f5285919f035a7b8p9@Oprm1
1.16e-13FFCP PHASE1:Mm9::chr2:163149068..163149077,+#_24f5cde9bd4a1fd0f5285919f035a7b8p@chr2:163149068..163149077, +
1.16e-13FFCP PHASE2:Mm9::chr2:163149068..163149077,+#_24f5cde9bd4a1fd0f5285919f035a7b8p@chr2:163149068..163149077, +
1.55e-13FFCP PHASE2:Mm9::chr5:123300144..123300151,+#_7314dece29173a04f757c285349eaee0p5@Rnf34
1.55e-13FFCP PHASE1:Mm9::chr5:123300144..123300151,+#_7314dece29173a04f757c285349eaee0p5@Rnf34
1.55e-13FFCP PHASE1:Mm9::chr11:52045677..52045682,+#_7314dece29173a04f757c285349eaee0p6@Skp1a
1.55e-13FFCP PHASE2:Mm9::chr11:52045677..52045682,+#_7314dece29173a04f757c285349eaee0p6@Skp1a
2.06e-13FFCP PHASE1:Mm9::chr6:45010099..45010108,+#_3ae46de9568193625b971ada0cc79aa9p13@Cntnap2
2.06e-13FFCP PHASE1:Mm9::chr7:52184898..52184907,-#_3ae46de9568193625b971ada0cc79aa9p6@Ap2a1
2.06e-13FFCP PHASE2:Mm9::chr7:52184898..52184907,-#_3ae46de9568193625b971ada0cc79aa9p6@Ap2a1
2.06e-13FFCP PHASE2:Mm9::chr4:43519210..43519232,+#_3ae46de9568193625b971ada0cc79aa9p@chr4:43519210..43519232, +
2.06e-13FFCP PHASE2:Mm9::chr10:31110259..31110265,-#_3ae46de9568193625b971ada0cc79aa9p@chr10:31110259..31110265, -
2.06e-13FFCP PHASE1:Mm9::chr10:31110259..31110265,-#_3ae46de9568193625b971ada0cc79aa9p@chr10:31110259..31110265, -
2.06e-13FFCP PHASE2:Mm9::chr6:45010099..45010108,+#_3ae46de9568193625b971ada0cc79aa9p13@Cntnap2
2.06e-13FFCP PHASE1:Mm9::chr6:126588640..126588687,-#_3ae46de9568193625b971ada0cc79aa9p@chr6:126588640..126588687, -
2.06e-13FFCP PHASE1:Mm9::chr4:43519210..43519232,+#_3ae46de9568193625b971ada0cc79aa9p@chr4:43519210..43519232, +
2.06e-13FFCP PHASE2:Mm9::chr6:126588640..126588687,-#_3ae46de9568193625b971ada0cc79aa9p@chr6:126588640..126588687, -
1.2e-12FFCP PHASE2:Mm9::chr10:4424212..4424215,+#_fd6ddc727bfbc957428ee93e2d09742fp3@Rgs17
1.2e-12FFCP PHASE1:Mm9::chr10:4424212..4424215,+#_fd6ddc727bfbc957428ee93e2d09742fp3@Rgs17
2.01e-12FFCP PHASE2:Mm9::chr10:85495564..85495574,+#_29fb0a70c5268618757374530faec956p14@Fbxo7
2.01e-12FFCP PHASE1:Mm9::chr10:85495564..85495574,+#_29fb0a70c5268618757374530faec956p14@Fbxo7
2.01e-12FFCP PHASE2:Mm9::chr2:155645140..155645170,-#_29fb0a70c5268618757374530faec956p1@ENSMUST00000124586
2.01e-12FFCP PHASE1:Mm9::chr2:155645140..155645170,-#_29fb0a70c5268618757374530faec956p1@ENSMUST00000124586