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UBERON:0006238

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Name:future brain
Namespace:FANTOM
Xrefs:
links:

EFO:0003431
EHDAA:300
EHDAA:830
EMAPA:16089
EMAPA:16471
RETIRED_EHDAA2:0000591
TAO:0000146

ZFA:0000146
Synonyms: "presumptive brain" EXACT [ZFA:0000146]
Comments:Usage notes: this covers a variety of structures across Metazoa
Subset: emapa_ehdaa2
vertebrate_core

Ontology association
Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.

link to ontology dataset
data


Parents

is_a:UBERON:0005423(developing anatomical structure)
part_of:UBERON:0002346(neurectoderm)



Children

develops from:UBERON:0000955 (brain)
part of:UBERON:0006240 (future forebrain),UBERON:0007277 (presumptive hindbrain),UBERON:0009616 (presumptive midbrain)

Ontology Tree: Loaded from BioPortal


FF samples
It includes FANTOM5 samples that overlay the Uberon ontology




Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0006238 (future brain), sorted by p-values
Analyst: Hideya Kawaji

link to source dataset
human : data
mouse : data


P-valueFFCPShort description
1.26e-114FFCP PHASE1:Hg19::chr12:106976678..106976708,+#_ef1d82cfa5d40e9452e29057ee1b397fp2@RFX4
1.26e-114FFCP PHASE2:Hg19::chr12:106976678..106976708,+#_ef1d82cfa5d40e9452e29057ee1b397fp2@RFX4
2.46e-114FFCP PHASE1:Hg19::chr4:46126063..46126087,-#_16ef0fe9d823c21e100d20ffd9dde368p2@GABRG1
2.46e-114FFCP PHASE2:Hg19::chr4:46126063..46126087,-#_16ef0fe9d823c21e100d20ffd9dde368p2@GABRG1
2.74e-114FFCP PHASE2:Hg19::chr5:11588907..11588967,-#_8668576a8e4444c05d40b8c162907bdep3@CTNND2
2.74e-114FFCP PHASE1:Hg19::chr5:11588907..11588967,-#_8668576a8e4444c05d40b8c162907bdep3@CTNND2
5.46e-112FFCP PHASE2:Hg19::chr17:68101117..68101162,+#_a5cb86fb28a48678808093f73b8d68d8p2@KCNJ16
5.46e-112FFCP PHASE1:Hg19::chr17:68101117..68101162,+#_a5cb86fb28a48678808093f73b8d68d8p2@KCNJ16
2.24e-111FFCP PHASE1:Hg19::chr1:110082487..110082535,+#_83e565f66b837b23d0b42c63b9b8092cp1@GPR61
2.24e-111FFCP PHASE2:Hg19::chr1:110082487..110082535,+#_83e565f66b837b23d0b42c63b9b8092cp1@GPR61
2.54e-111FFCP PHASE1:Hg19::chr18:55019840..55019850,+#_5971f0368608f49d376d596a3b128af8p5@ST8SIA3
2.54e-111FFCP PHASE2:Hg19::chr18:55019840..55019850,+#_5971f0368608f49d376d596a3b128af8p5@ST8SIA3
1.06e-110FFCP PHASE1:Hg19::chr2:74612644..74612670,+#_f60598065d357ffeb697e840ba402938p1@ENST00000412957
1.06e-110FFCP PHASE2:Hg19::chr2:74612644..74612670,+#_f60598065d357ffeb697e840ba402938p1@ENST00000412957
1.37e-110FFCP PHASE2:Hg19::chr12:106976774..106976788,+#_cc44fd119b321448b9ee0d5183878176p1@RFX4
1.37e-110FFCP PHASE1:Hg19::chr12:106976774..106976788,+#_cc44fd119b321448b9ee0d5183878176p1@RFX4
2.94e-110FFCP PHASE1:Hg19::chr9:87283501..87283520,+#_5caa2125c172a0e7d91f2cc3bf527682p17@NTRK2
2.94e-110FFCP PHASE2:Hg19::chr9:87283501..87283520,+#_5caa2125c172a0e7d91f2cc3bf527682p17@NTRK2
7.73e-110FFCP PHASE2:Hg19::chr12:106976656..106976672,+#_795768af4e2e96cafff151b06a2969b0p4@RFX4
7.73e-110FFCP PHASE1:Hg19::chr12:106976656..106976672,+#_795768af4e2e96cafff151b06a2969b0p4@RFX4
1.08e-109FFCP PHASE1:Hg19::chr14:24047772..24047790,-#_0419f5941f9bd7375ea8fe55f67d579bp6@JPH4
1.08e-109FFCP PHASE2:Hg19::chr14:24047772..24047790,-#_0419f5941f9bd7375ea8fe55f67d579bp6@JPH4
1.56e-109FFCP PHASE2:Hg19::chr2:50201220..50201261,-#_53d7c3da37094f8cfaad56660e349eafp3@NRXN1
1.56e-109FFCP PHASE1:Hg19::chr2:50201220..50201261,-#_53d7c3da37094f8cfaad56660e349eafp3@NRXN1
3.69e-109FFCP PHASE2:Hg19::chr8:145560111..145560165,-#_7b91442865a3c13ba1a4879c8fe66db3p2@SCRT1
3.69e-109FFCP PHASE1:Hg19::chr8:145560111..145560165,-#_7b91442865a3c13ba1a4879c8fe66db3p2@SCRT1
7.38e-109FFCP PHASE2:Hg19::chr2:74612614..74612643,+#_82c261dff1a0bead0588b9a4ce919943p1@ENST00000418990, p1@ENST00000426715, p1@ENST00000427343
7.38e-109FFCP PHASE1:Hg19::chr2:74612614..74612643,+#_82c261dff1a0bead0588b9a4ce919943p1@ENST00000418990, p1@ENST00000426715, p1@ENST00000427343
9.84e-109FFCP PHASE1:Hg19::chr5:161275118..161275138,+#_23127e57781be9d8905700d14665cc24p3@GABRA1
9.84e-109FFCP PHASE2:Hg19::chr5:161275118..161275138,+#_23127e57781be9d8905700d14665cc24p3@GABRA1
1.63e-108FFCP PHASE1:Hg19::chr2:73286253..73286279,-#_3cb6d8631d9e886a2028b76b9b9afd98p3@SFXN5
1.63e-108FFCP PHASE2:Hg19::chr2:73286253..73286279,-#_3cb6d8631d9e886a2028b76b9b9afd98p3@SFXN5
2.13e-108FFCP PHASE1:Hg19::chr11:83984302..83984330,-#_63b1573da99eff4240eef556155b7274p2@DLG2
2.13e-108FFCP PHASE2:Hg19::chr11:83984302..83984330,-#_63b1573da99eff4240eef556155b7274p2@DLG2
4.2e-108FFCP PHASE1:Hg19::chr4:46126093..46126106,-#_3c5388a593d39fe1aa193dbf91527977p3@GABRG1
4.2e-108FFCP PHASE2:Hg19::chr4:46126093..46126106,-#_3c5388a593d39fe1aa193dbf91527977p3@GABRG1
4.37e-108FFCP PHASE2:Hg19::chr7:47420733..47420758,-#_74646ebd81ab06bbaab857e8dd5ed846-, p@chr7:47420733..47420758
4.37e-108FFCP PHASE1:Hg19::chr7:47420733..47420758,-#_74646ebd81ab06bbaab857e8dd5ed846-, p@chr7:47420733..47420758
5.22e-108FFCP PHASE2:Hg19::chr3:167452969..167453019,+#_81771dd554f87178e7d44aab37a50747p2@SERPINI1
5.22e-108FFCP PHASE1:Hg19::chr3:167452969..167453019,+#_81771dd554f87178e7d44aab37a50747p2@SERPINI1
5.23e-108FFCP PHASE1:Hg19::chr5:112074041..112074101,+#_628515d2d8141558a9d64d86c5ab74a1p4@APC
5.23e-108FFCP PHASE2:Hg19::chr5:112074041..112074101,+#_628515d2d8141558a9d64d86c5ab74a1p4@APC
5.65e-108FFCP PHASE2:Hg19::chr5:11384884..11384916,-#_eb2d0ee6fc84cf1e6b4636984e710db5p8@CTNND2
5.65e-108FFCP PHASE1:Hg19::chr5:11384884..11384916,-#_eb2d0ee6fc84cf1e6b4636984e710db5p8@CTNND2
1.1e-107FFCP PHASE1:Hg19::chr4:46126009..46126045,-#_42d7a300fcee3e9bc804ccfc99012352p1@GABRG1
1.1e-107FFCP PHASE2:Hg19::chr4:46126009..46126045,-#_42d7a300fcee3e9bc804ccfc99012352p1@GABRG1
1.41e-107FFCP PHASE1:Hg19::chrX:13835398..13835429,-#_aa9dde86e2b10601730d6553f1915d5fp6@GPM6B
1.41e-107FFCP PHASE2:Hg19::chrX:13835398..13835429,-#_aa9dde86e2b10601730d6553f1915d5fp6@GPM6B
1.62e-107FFCP PHASE2:Hg19::chr6:56716896..56716928,-#_5f1fb2c0b48960e56a33fccb757c85efp8@DST
1.62e-107FFCP PHASE1:Hg19::chr6:56716896..56716928,-#_5f1fb2c0b48960e56a33fccb757c85efp8@DST
2.6e-107FFCP PHASE2:Hg19::chr18:32398296..32398318,+#_2e6e4c2bac51ecd53ab45f0586ca2976p7@DTNA
2.6e-107FFCP PHASE1:Hg19::chr18:32398296..32398318,+#_2e6e4c2bac51ecd53ab45f0586ca2976p7@DTNA
4.0e-107FFCP PHASE2:Hg19::chr7:98467524..98467537,-#_79361f6c4e9365c186c49f53e8b96777p3@TMEM130
4.0e-107FFCP PHASE1:Hg19::chr7:98467524..98467537,-#_79361f6c4e9365c186c49f53e8b96777p3@TMEM130
5.57e-107FFCP PHASE1:Hg19::chr17:36760961..36760976,-#_20a9ff88e6a2ac81575b7f5b66ebf466p2@SRCIN1
5.57e-107FFCP PHASE2:Hg19::chr17:36760961..36760976,-#_20a9ff88e6a2ac81575b7f5b66ebf466p2@SRCIN1
5.63e-107FFCP PHASE2:Hg19::chr15:79576178..79576222,-#_07ff712303d6e15c141243d0b7654b02p1@ENST00000559225, p1@ENST00000559979, p1@ENST00000560533
5.63e-107FFCP PHASE1:Hg19::chr15:79576178..79576222,-#_07ff712303d6e15c141243d0b7654b02p1@ENST00000559225, p1@ENST00000559979, p1@ENST00000560533
5.94e-107FFCP PHASE1:Hg19::chr7:14943271..14943288,-#_a7b3e95a7460e5ebe45394f83f4c85f0p3@DGKB
5.94e-107FFCP PHASE2:Hg19::chr7:14943271..14943288,-#_a7b3e95a7460e5ebe45394f83f4c85f0p3@DGKB
7.46e-107FFCP PHASE1:Hg19::chr17:54230819..54230848,+#_a09297a5f0f7646a3905c11be2ebed61p1@ANKFN1
7.46e-107FFCP PHASE2:Hg19::chr17:54230819..54230848,+#_a09297a5f0f7646a3905c11be2ebed61p1@ANKFN1
1.58e-106FFCP PHASE2:Hg19::chr1:156217805..156217817,-#_a2a73c62d4e02a25ba473196223a2278p2@PAQR6
1.58e-106FFCP PHASE1:Hg19::chr1:156217805..156217817,-#_a2a73c62d4e02a25ba473196223a2278p2@PAQR6
1.61e-106FFCP PHASE1:Hg19::chr2:210636266..210636306,+#_47f503f20d9af154d0dccb74b69cd362p4@UNC80
1.61e-106FFCP PHASE2:Hg19::chr2:210636266..210636306,+#_47f503f20d9af154d0dccb74b69cd362p4@UNC80
2.35e-106FFCP PHASE2:Hg19::chr12:99548496..99548518,-#_6431c40efae781d3d51b51e0b0603007p3@ANKS1B
2.35e-106FFCP PHASE1:Hg19::chr12:99548496..99548518,-#_6431c40efae781d3d51b51e0b0603007p3@ANKS1B
3.68e-106FFCP PHASE1:Hg19::chr1:84630574..84630602,+#_d7fabfc1b25e6d3b9603707b35994333p9@PRKACB
3.68e-106FFCP PHASE2:Hg19::chr1:84630574..84630602,+#_d7fabfc1b25e6d3b9603707b35994333p9@PRKACB
4.29e-106FFCP PHASE2:Hg19::chr8:9763167..9763180,-#_7fb5068702aed65862a0f4f4644d7c39p6@ENST00000521242
4.29e-106FFCP PHASE1:Hg19::chr8:9763167..9763180,-#_7fb5068702aed65862a0f4f4644d7c39p6@ENST00000521242
4.66e-106FFCP PHASE1:Hg19::chr5:87437100..87437115,-#_96664d8b46151ec9645c0749096cfc8ep1@LOC100289347
4.66e-106FFCP PHASE2:Hg19::chr5:87437100..87437115,-#_96664d8b46151ec9645c0749096cfc8ep1@LOC100289347
4.78e-106FFCP PHASE2:Hg19::chr12:22562202..22562222,+#_64e21c773ad3fc6b8b3d847ef70adda6p@chr12:22562202..22562222, +
4.78e-106FFCP PHASE1:Hg19::chr12:22562202..22562222,+#_64e21c773ad3fc6b8b3d847ef70adda6p@chr12:22562202..22562222, +
2.35e-105FFCP PHASE1:Hg19::chr17:7560542..7560578,+#_f98e8a8572a767c54b5cf2383a5b26fbp4@ATP1B2
2.35e-105FFCP PHASE2:Hg19::chr17:7560542..7560578,+#_f98e8a8572a767c54b5cf2383a5b26fbp4@ATP1B2
2.56e-105FFCP PHASE1:Hg19::chr7:4998802..4998861,-#_0bfa8746695fcc471f0851c6106ff680p1@MMD2
2.56e-105FFCP PHASE2:Hg19::chr7:4998802..4998861,-#_0bfa8746695fcc471f0851c6106ff680p1@MMD2
4.86e-105FFCP PHASE2:Hg19::chr5:11386115..11386130,-#_af6d399e5609f7278431c43423354ba8p2@CTNND2
4.86e-105FFCP PHASE1:Hg19::chr5:11386115..11386130,-#_af6d399e5609f7278431c43423354ba8p2@CTNND2
4.99e-105FFCP PHASE2:Hg19::chr11:35441048..35441059,-#_643b309d4e493d696d2d13fc46e089cfp4@SLC1A2
4.99e-105FFCP PHASE1:Hg19::chr11:35441048..35441059,-#_643b309d4e493d696d2d13fc46e089cfp4@SLC1A2
5.65e-105FFCP PHASE1:Hg19::chr17:11973062..11973087,+#_c2077352bb01756b3157d61cc15e512dp4@MAP2K4
5.65e-105FFCP PHASE2:Hg19::chr2:131721216..131721304,+#_c2077352bb01756b3157d61cc15e512d+, p@chr2:131721216..131721304
5.65e-105FFCP PHASE1:Hg19::chr2:131721216..131721304,+#_c2077352bb01756b3157d61cc15e512dp@chr2:131721216..131721304, +
5.65e-105FFCP PHASE2:Hg19::chr17:11973062..11973087,+#_c2077352bb01756b3157d61cc15e512dp4@MAP2K4
6.52e-105FFCP PHASE1:Hg19::chr2:210526233..210526258,+#_04e2adda546af1b1c81a22ef91d341fdp9@MAP2
6.52e-105FFCP PHASE2:Hg19::chr2:210526233..210526258,+#_04e2adda546af1b1c81a22ef91d341fdp9@MAP2
6.71e-105FFCP PHASE1:Hg19::chr7:154002286..154002307,+#_7f4d33c65d25938452b8028365709828p3@DPP6
6.71e-105FFCP PHASE2:Hg19::chr7:154002286..154002307,+#_7f4d33c65d25938452b8028365709828p3@DPP6
7.56e-105FFCP PHASE2:Hg19::chr1:84630610..84630621,+#_f3ca26b69a80922a5586f945359dba47p17@PRKACB
7.56e-105FFCP PHASE1:Hg19::chr1:84630610..84630621,+#_f3ca26b69a80922a5586f945359dba47p17@PRKACB
1.28e-104FFCP PHASE2:Hg19::chr7:36446001..36446028,+#_4770c73f0c6347b533be04914a145553p4@ANLN
1.28e-104FFCP PHASE1:Hg19::chr7:36446001..36446028,+#_4770c73f0c6347b533be04914a145553p4@ANLN
1.32e-104FFCP PHASE2:Hg19::chr12:102060419..102060444,+#_6300f919fe6ae5bd4ad3e73b2f1c29f5p2@MYBPC1
1.32e-104FFCP PHASE1:Hg19::chr12:102060419..102060444,+#_6300f919fe6ae5bd4ad3e73b2f1c29f5p2@MYBPC1
1.56e-104FFCP PHASE1:Hg19::chr1:2005182..2005194,+#_07f13404a3bd59c9e80ec7f5e87e7e46p8@PRKCZ
1.56e-104FFCP PHASE2:Hg19::chr1:2005182..2005194,+#_07f13404a3bd59c9e80ec7f5e87e7e46p8@PRKCZ