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UBERON:0006293

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Name:spleen primordium
Namespace:FANTOM
Definition:"A dense syncitial-like mesenchymal thickening in the dorsal mesogastrium." [ISBN:0123747295]
Xrefs:
links:

EHDAA2:0001904
EHDAA:3003
EMAPA:18535
EMAPA:18659

XAO:0000326
Synonyms: "left spleen primordium" NARROW [XAO:0000326]
"splenic primordium" EXACT [EHDAA2:0001904]
Comments:todo - check difference between splenic and spleen in EMAPA

Ontology association
Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.

link to ontology dataset
data


Parents

is_a:UBERON:0001048(primordium),UBERON:0003104(mesenchyme),UBERON:0004120(mesoderm-derived structure),UBERON:0005291(embryonic tissue)
develops_from:UBERON:0004872(splanchnic layer of lateral plate mesoderm)
part_of:UBERON:0005602(dorsal mesogastrium)



Children

develops from:UBERON:0002106 (spleen)

Ontology Tree: Loaded from BioPortal


FF samples
It includes FANTOM5 samples that overlay the Uberon ontology




Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0006293 (spleen primordium), sorted by p-values
Analyst: Hideya Kawaji

link to source dataset
human : data
mouse : data


P-valueFFCPShort description
8.98e-131FFCP PHASE2:Hg19::chr9:124516729..124516752,+#_0e30c25bb3d58f10fd534c9d86c10a80p@chr9:124516729..124516752, +
8.98e-131FFCP PHASE2:Hg19::chr21:28820954..28820963,-#_0e30c25bb3d58f10fd534c9d86c10a80p3@ENST00000420186, p3@uc002ymh.2
8.98e-131FFCP PHASE2:Hg19::chr11:56859584..56859589,-#_0e30c25bb3d58f10fd534c9d86c10a80p@chr11:56859584..56859589, -
8.98e-131FFCP PHASE1:Hg19::chr10:98014943..98014960,-#_0e30c25bb3d58f10fd534c9d86c10a80-, p@chr10:98014943..98014960
8.98e-131FFCP PHASE1:Hg19::chr8:22424709..22424716,-#_0e30c25bb3d58f10fd534c9d86c10a80p2@ENST00000517384
8.98e-131FFCP PHASE1:Hg19::chrX:69645652..69645664,+#_0e30c25bb3d58f10fd534c9d86c10a80p7@GDPD2
8.98e-131FFCP PHASE2:Hg19::chr1:159172187..159172197,-#_0e30c25bb3d58f10fd534c9d86c10a80p1@uc001ftm.1
8.98e-131FFCP PHASE1:Hg19::chr11:56859638..56859643,-#_0e30c25bb3d58f10fd534c9d86c10a80p@chr11:56859638..56859643, -
8.98e-131FFCP PHASE2:Hg19::chr8:22424743..22424759,-#_0e30c25bb3d58f10fd534c9d86c10a80p1@ENST00000517384
8.98e-131FFCP PHASE1:Hg19::chr6:119812455..119812476,-#_0e30c25bb3d58f10fd534c9d86c10a80p1@uc003pyn.1
8.98e-131FFCP PHASE1:Hg19::chr19:32401253..32401271,-#_0e30c25bb3d58f10fd534c9d86c10a80p@chr19:32401253..32401271, -
8.98e-131FFCP PHASE2:Hg19::chr7:22259740..22259751,-#_0e30c25bb3d58f10fd534c9d86c10a80p19@RAPGEF5
8.98e-131FFCP PHASE1:Hg19::chr11:1891326..1891337,-#_0e30c25bb3d58f10fd534c9d86c10a80p@chr11:1891326..1891337, -
8.98e-131FFCP PHASE1:Hg19::chr9:133973310..133973321,+#_0e30c25bb3d58f10fd534c9d86c10a80p18@AIF1L
8.98e-131FFCP PHASE1:Hg19::chr21:28820941..28820952,-#_0e30c25bb3d58f10fd534c9d86c10a80p2@ENST00000420186, p2@uc002ymh.2
8.98e-131FFCP PHASE1:Hg19::chr17:78171885..78171900,+#_0e30c25bb3d58f10fd534c9d86c10a80p@chr17:78171885..78171900, +
8.98e-131FFCP PHASE1:Hg19::chr1:159172187..159172197,-#_0e30c25bb3d58f10fd534c9d86c10a80p1@uc001ftm.1
8.98e-131FFCP PHASE2:Hg19::chr11:56859603..56859606,-#_0e30c25bb3d58f10fd534c9d86c10a80p@chr11:56859603..56859606, -
8.98e-131FFCP PHASE1:Hg19::chr9:79894790..79894797,+#_0e30c25bb3d58f10fd534c9d86c10a80p10@VPS13A
8.98e-131FFCP PHASE2:Hg19::chr9:79894790..79894797,+#_0e30c25bb3d58f10fd534c9d86c10a80p10@VPS13A
8.98e-131FFCP PHASE1:Hg19::chr9:127269434..127269438,-#_0e30c25bb3d58f10fd534c9d86c10a80p8@NR5A1
8.98e-131FFCP PHASE1:Hg19::chr8:22424743..22424759,-#_0e30c25bb3d58f10fd534c9d86c10a80p1@ENST00000517384
8.98e-131FFCP PHASE1:Hg19::chr11:56859693..56859701,-#_0e30c25bb3d58f10fd534c9d86c10a80p@chr11:56859693..56859701, -
8.98e-131FFCP PHASE1:Hg19::chr11:925449..925458,+#_0e30c25bb3d58f10fd534c9d86c10a80p17@AP2A2
8.98e-131FFCP PHASE2:Hg19::chr8:22436248..22436259,+#_0e30c25bb3d58f10fd534c9d86c10a80p11@PDLIM2
8.98e-131FFCP PHASE2:Hg19::chr8:47834174..47834213,+#_0e30c25bb3d58f10fd534c9d86c10a80p1@ENST00000524012
8.98e-131FFCP PHASE2:Hg19::chr21:28820892..28820899,-#_0e30c25bb3d58f10fd534c9d86c10a80p4@ENST00000420186, p4@uc002ymh.2
8.98e-131FFCP PHASE1:Hg19::chr21:28820954..28820963,-#_0e30c25bb3d58f10fd534c9d86c10a80p3@ENST00000420186, p3@uc002ymh.2
8.98e-131FFCP PHASE1:Hg19::chr9:127260615..127260651,-#_0e30c25bb3d58f10fd534c9d86c10a80p@chr9:127260615..127260651, -
8.98e-131FFCP PHASE2:Hg19::chr10:98014908..98014919,-#_0e30c25bb3d58f10fd534c9d86c10a80p@chr10:98014908..98014919, -
8.98e-131FFCP PHASE2:Hg19::chr4:76901930..76901942,+#_0e30c25bb3d58f10fd534c9d86c10a80p1@ENST00000501239
8.98e-131FFCP PHASE1:Hg19::chr11:56859584..56859589,-#_0e30c25bb3d58f10fd534c9d86c10a80p@chr11:56859584..56859589, -
8.98e-131FFCP PHASE2:Hg19::chr6:152639579..152639586,-#_0e30c25bb3d58f10fd534c9d86c10a80p60@SYNE1
8.98e-131FFCP PHASE2:Hg19::chr11:56859608..56859619,-#_0e30c25bb3d58f10fd534c9d86c10a80p@chr11:56859608..56859619, -
8.98e-131FFCP PHASE1:Hg19::chr9:124516729..124516752,+#_0e30c25bb3d58f10fd534c9d86c10a80p@chr9:124516729..124516752, +
8.98e-131FFCP PHASE2:Hg19::chr15:95561320..95561328,-#_0e30c25bb3d58f10fd534c9d86c10a80p@chr15:95561320..95561328, -
8.98e-131FFCP PHASE1:Hg19::chr9:127269462..127269484,-#_0e30c25bb3d58f10fd534c9d86c10a80p2@NR5A1
8.98e-131FFCP PHASE1:Hg19::chr8:22436248..22436259,+#_0e30c25bb3d58f10fd534c9d86c10a80p11@PDLIM2
8.98e-131FFCP PHASE2:Hg19::chr16:84218794..84218800,+#_0e30c25bb3d58f10fd534c9d86c10a80p@chr16:84218794..84218800, +
8.98e-131FFCP PHASE2:Hg19::chr9:127269434..127269438,-#_0e30c25bb3d58f10fd534c9d86c10a80p8@NR5A1
8.98e-131FFCP PHASE1:Hg19::chr15:95561320..95561328,-#_0e30c25bb3d58f10fd534c9d86c10a80p@chr15:95561320..95561328, -
8.98e-131FFCP PHASE2:Hg19::chr1:157811772..157811796,-#_0e30c25bb3d58f10fd534c9d86c10a80p7@CD5L
8.98e-131FFCP PHASE1:Hg19::chr8:47834174..47834213,+#_0e30c25bb3d58f10fd534c9d86c10a80p1@ENST00000524012
8.98e-131FFCP PHASE2:Hg19::chr21:28820911..28820933,-#_0e30c25bb3d58f10fd534c9d86c10a80p1@ENST00000420186, p1@uc002ymh.2
8.98e-131FFCP PHASE1:Hg19::chr1:28520450..28520453,-#_0e30c25bb3d58f10fd534c9d86c10a80p21@PTAFR
8.98e-131FFCP PHASE2:Hg19::chr10:98014943..98014960,-#_0e30c25bb3d58f10fd534c9d86c10a80p@chr10:98014943..98014960, -
8.98e-131FFCP PHASE2:Hg19::chr1:28520450..28520453,-#_0e30c25bb3d58f10fd534c9d86c10a80p21@PTAFR
8.98e-131FFCP PHASE2:Hg19::chr9:127260615..127260651,-#_0e30c25bb3d58f10fd534c9d86c10a80p@chr9:127260615..127260651, -
8.98e-131FFCP PHASE1:Hg19::chr11:56859603..56859606,-#_0e30c25bb3d58f10fd534c9d86c10a80p@chr11:56859603..56859606, -
8.98e-131FFCP PHASE2:Hg19::chr11:56859638..56859643,-#_0e30c25bb3d58f10fd534c9d86c10a80p@chr11:56859638..56859643, -
8.98e-131FFCP PHASE1:Hg19::chr7:22259740..22259751,-#_0e30c25bb3d58f10fd534c9d86c10a80p19@RAPGEF5
8.98e-131FFCP PHASE1:Hg19::chr14:75904485..75904519,+#_0e30c25bb3d58f10fd534c9d86c10a80p12@JDP2
8.98e-131FFCP PHASE2:Hg19::chrX:69645652..69645664,+#_0e30c25bb3d58f10fd534c9d86c10a80p7@GDPD2
8.98e-131FFCP PHASE2:Hg19::chr11:1891326..1891337,-#_0e30c25bb3d58f10fd534c9d86c10a80p@chr11:1891326..1891337, -
8.98e-131FFCP PHASE2:Hg19::chr9:127269462..127269484,-#_0e30c25bb3d58f10fd534c9d86c10a80p2@NR5A1
8.98e-131FFCP PHASE1:Hg19::chr21:28820892..28820899,-#_0e30c25bb3d58f10fd534c9d86c10a80p4@ENST00000420186, p4@uc002ymh.2
8.98e-131FFCP PHASE2:Hg19::chr11:925449..925458,+#_0e30c25bb3d58f10fd534c9d86c10a80p17@AP2A2
8.98e-131FFCP PHASE2:Hg19::chr14:75904485..75904519,+#_0e30c25bb3d58f10fd534c9d86c10a80p12@JDP2
8.98e-131FFCP PHASE1:Hg19::chr1:157811772..157811796,-#_0e30c25bb3d58f10fd534c9d86c10a80p7@CD5L
8.98e-131FFCP PHASE2:Hg19::chr21:28820941..28820952,-#_0e30c25bb3d58f10fd534c9d86c10a80p2@ENST00000420186, p2@uc002ymh.2
8.98e-131FFCP PHASE2:Hg19::chr9:133973310..133973321,+#_0e30c25bb3d58f10fd534c9d86c10a80p18@AIF1L
8.98e-131FFCP PHASE1:Hg19::chr10:98014908..98014919,-#_0e30c25bb3d58f10fd534c9d86c10a80p@chr10:98014908..98014919, -
8.98e-131FFCP PHASE1:Hg19::chr4:76901930..76901942,+#_0e30c25bb3d58f10fd534c9d86c10a80p1@ENST00000501239
8.98e-131FFCP PHASE2:Hg19::chr6:119812455..119812476,-#_0e30c25bb3d58f10fd534c9d86c10a80p1@uc003pyn.1
8.98e-131FFCP PHASE1:Hg19::chr11:56859608..56859619,-#_0e30c25bb3d58f10fd534c9d86c10a80p@chr11:56859608..56859619, -
8.98e-131FFCP PHASE2:Hg19::chr8:22424709..22424716,-#_0e30c25bb3d58f10fd534c9d86c10a80p2@ENST00000517384
8.98e-131FFCP PHASE2:Hg19::chr19:32401253..32401271,-#_0e30c25bb3d58f10fd534c9d86c10a80p@chr19:32401253..32401271, -
8.98e-131FFCP PHASE2:Hg19::chr11:56859693..56859701,-#_0e30c25bb3d58f10fd534c9d86c10a80p@chr11:56859693..56859701, -
8.98e-131FFCP PHASE2:Hg19::chr17:78171885..78171900,+#_0e30c25bb3d58f10fd534c9d86c10a80p@chr17:78171885..78171900, +
8.98e-131FFCP PHASE1:Hg19::chr6:152639579..152639586,-#_0e30c25bb3d58f10fd534c9d86c10a80p60@SYNE1
8.98e-131FFCP PHASE1:Hg19::chr9:127269488..127269495,-#_0e30c25bb3d58f10fd534c9d86c10a80p5@NR5A1
8.98e-131FFCP PHASE2:Hg19::chr9:127269488..127269495,-#_0e30c25bb3d58f10fd534c9d86c10a80p5@NR5A1
8.98e-131FFCP PHASE1:Hg19::chr16:84218794..84218800,+#_0e30c25bb3d58f10fd534c9d86c10a80p@chr16:84218794..84218800, +
8.98e-131FFCP PHASE1:Hg19::chr21:28820911..28820933,-#_0e30c25bb3d58f10fd534c9d86c10a80p1@ENST00000420186, p1@uc002ymh.2
6.24e-88FFCP PHASE1:Hg19::chr9:127267367..127267383,+#_1d76352b9050b2f1d5f80fc9d2a7334dp@chr9:127267367..127267383, +
6.24e-88FFCP PHASE2:Hg19::chr21:40459334..40459341,+#_1d76352b9050b2f1d5f80fc9d2a7334dp@chr21:40459334..40459341, +
6.24e-88FFCP PHASE2:Hg19::chr19:32401274..32401289,-#_1d76352b9050b2f1d5f80fc9d2a7334dp@chr19:32401274..32401289, -
6.24e-88FFCP PHASE1:Hg19::chr1:21011608..21011618,-#_1d76352b9050b2f1d5f80fc9d2a7334dp15@KIF17
6.24e-88FFCP PHASE2:Hg19::chr11:56859722..56859732,-#_1d76352b9050b2f1d5f80fc9d2a7334dp@chr11:56859722..56859732, -
6.24e-88FFCP PHASE2:Hg19::chr1:21011608..21011618,-#_1d76352b9050b2f1d5f80fc9d2a7334dp15@KIF17
6.24e-88FFCP PHASE1:Hg19::chr21:40459334..40459341,+#_1d76352b9050b2f1d5f80fc9d2a7334dp@chr21:40459334..40459341, +
6.24e-88FFCP PHASE2:Hg19::chr9:127267367..127267383,+#_1d76352b9050b2f1d5f80fc9d2a7334dp@chr9:127267367..127267383, +
6.24e-88FFCP PHASE1:Hg19::chr19:32401274..32401289,-#_1d76352b9050b2f1d5f80fc9d2a7334dp@chr19:32401274..32401289, -
6.24e-88FFCP PHASE1:Hg19::chr11:56859722..56859732,-#_1d76352b9050b2f1d5f80fc9d2a7334dp@chr11:56859722..56859732, -
6.24e-88FFCP PHASE1:Hg19::chr4:146461014..146461025,+#_1d76352b9050b2f1d5f80fc9d2a7334dp@chr4:146461014..146461025, +
6.24e-88FFCP PHASE2:Hg19::chr3:130267501..130267516,+#_1d76352b9050b2f1d5f80fc9d2a7334dp@chr3:130267501..130267516, +
6.24e-88FFCP PHASE2:Hg19::chr22:36718586..36718593,-#_1d76352b9050b2f1d5f80fc9d2a7334dp@chr22:36718586..36718593, -
6.24e-88FFCP PHASE2:Hg19::chr4:146461014..146461025,+#_1d76352b9050b2f1d5f80fc9d2a7334dp@chr4:146461014..146461025, +
6.24e-88FFCP PHASE1:Hg19::chr22:36718586..36718593,-#_1d76352b9050b2f1d5f80fc9d2a7334dp@chr22:36718586..36718593, -
6.24e-88FFCP PHASE1:Hg19::chr3:130267501..130267516,+#_1d76352b9050b2f1d5f80fc9d2a7334dp@chr3:130267501..130267516, +
9.74e-88FFCP PHASE1:Hg19::chr14:24168655..24168686,+#_9e0dab7a036b6ea811038be7b655f29fp@chr14:24168655..24168686, +
9.74e-88FFCP PHASE1:Hg19::chr12:72481040..72481051,+#_9e0dab7a036b6ea811038be7b655f29fp19@TRHDE
9.74e-88FFCP PHASE1:Hg19::chr16:70680361..70680370,+#_9e0dab7a036b6ea811038be7b655f29fp6@IL34
9.74e-88FFCP PHASE2:Hg19::chr14:24168655..24168686,+#_9e0dab7a036b6ea811038be7b655f29fp@chr14:24168655..24168686, +
9.74e-88FFCP PHASE1:Hg19::chr7:151070957..151070988,+#_9e0dab7a036b6ea811038be7b655f29fp@chr7:151070957..151070988, +
9.74e-88FFCP PHASE1:Hg19::chr2:128321491..128321509,+#_9e0dab7a036b6ea811038be7b655f29fp@chr2:128321491..128321509, +
9.74e-88FFCP PHASE2:Hg19::chr16:70680361..70680370,+#_9e0dab7a036b6ea811038be7b655f29fp6@IL34
9.74e-88FFCP PHASE2:Hg19::chr12:72481040..72481051,+#_9e0dab7a036b6ea811038be7b655f29fp19@TRHDE
9.74e-88FFCP PHASE2:Hg19::chr2:128321491..128321509,+#_9e0dab7a036b6ea811038be7b655f29fp@chr2:128321491..128321509, +
9.74e-88FFCP PHASE2:Hg19::chr7:151070957..151070988,+#_9e0dab7a036b6ea811038be7b655f29fp@chr7:151070957..151070988, +