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UBERON:0006562

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Name:pharynx
Namespace:FANTOM
Definition:"The pharynx is the part of the digestive system immediately posterior to the mouth[GO]." [GO:0060465]
Xrefs:
links:

AAO:0000967
FBbt:00005380
MAT:0000049
MIAA:0000049
SCTID:181211006

WBbt:0003681
Comments:Taxon notes: This is a dubious grouping class that collects structures as diverse as the chordate pharynx (which is a subclass - UBERON:0001042) and the nematode pharynx. This portion of the ontology should be revised, but this should be done in sync with GO, from which this grouping arises
Subset: grouping_class
uberon_slim

Ontology association
Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.

link to ontology dataset
data


Parents

is_a:UBERON:0004921(subdivision of digestive tract)



Children

is a:UBERON:0001042 (chordate pharynx)
derives from:FF:0100819 (pharyngeal cell line sample)

Ontology Tree: Loaded from BioPortal


FF samples
It includes FANTOM5 samples that overlay the Uberon ontology


Human (Homo sapiens)


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0006562 (pharynx), sorted by p-values
Analyst: Hideya Kawaji

link to source dataset
human : data
mouse : data


P-valueFFCPShort description
1.66e-65FFCP PHASE2:Mm9::chr6:41483113..41483131,+#_49425d71fafd36db3d6fed7f27463755p4@uc009bpa.1
1.66e-65FFCP PHASE1:Mm9::chr6:41483113..41483131,+#_49425d71fafd36db3d6fed7f27463755p4@uc009bpa.1
1.86e-64FFCP PHASE1:Mm9::chr6:41483037..41483046,+#_f39a541f5bb956467989af9577d8b75dp8@uc009bpa.1
1.86e-64FFCP PHASE2:Mm9::chr6:41483037..41483046,+#_f39a541f5bb956467989af9577d8b75dp8@uc009bpa.1
8.23e-63FFCP PHASE2:Mm9::chr6:41485075..41485096,+#_3f4b24c552d9f16ee3f1aa436251b1bbp1@ENSMUST00000103288, p1@uc009bpl.1
8.23e-63FFCP PHASE1:Mm9::chr6:41485075..41485096,+#_3f4b24c552d9f16ee3f1aa436251b1bbp1@ENSMUST00000103288, p1@uc009bpl.1
1.32e-61FFCP PHASE1:Mm9::chr6:41491752..41491776,-#_e921484b91ef74a4a952b3c1f4317d77p@chr6:41491752..41491776, -
1.32e-61FFCP PHASE2:Mm9::chr12:108361918..108361930,-#_e921484b91ef74a4a952b3c1f4317d77p@chr12:108361918..108361930, -
1.32e-61FFCP PHASE2:Mm9::chr6:41491752..41491776,-#_e921484b91ef74a4a952b3c1f4317d77p@chr6:41491752..41491776, -
1.32e-61FFCP PHASE1:Mm9::chr12:108361918..108361930,-#_e921484b91ef74a4a952b3c1f4317d77p@chr12:108361918..108361930, -
2.27e-60FFCP PHASE1:Mm9::chr6:41483173..41483188,+#_3ada883b8894c62a8bec1db9e663870dp2@ENSMUST00000103283
2.27e-60FFCP PHASE2:Mm9::chr6:41483173..41483188,+#_3ada883b8894c62a8bec1db9e663870dp2@ENSMUST00000103283
2.83e-60FFCP PHASE2:Mm9::chr6:41484803..41484826,+#_1da6a25d0e8d0fc0908fc85aa0c8e4b8p1@ENSMUST00000103287, p1@uc009bpi.1, p1@uc009bpj.1
2.83e-60FFCP PHASE1:Mm9::chr6:41484803..41484826,+#_1da6a25d0e8d0fc0908fc85aa0c8e4b8p1@ENSMUST00000103287, p1@uc009bpi.1, p1@uc009bpj.1
3.96e-59FFCP PHASE1:Mm9::chr9:44807434..44807445,-#_54754195d70620c76669b632c1d6e6b7p@chr9:44807434..44807445, -
3.96e-59FFCP PHASE2:Mm9::chr9:44807434..44807445,-#_54754195d70620c76669b632c1d6e6b7p@chr9:44807434..44807445, -
4.91e-59FFCP PHASE1:Mm9::chr6:41494001..41494028,+#_a5b6c9c5f2dd97b6eed788f277cd4497p@chr6:41494001..41494028, +
4.91e-59FFCP PHASE2:Mm9::chr6:41494001..41494028,+#_a5b6c9c5f2dd97b6eed788f277cd4497p@chr6:41494001..41494028, +
1.18e-58FFCP PHASE2:Mm9::chr9:44809185..44809215,-#_6e4360c4d784533963e7e5e7025e59f4p@chr9:44809185..44809215, -
1.18e-58FFCP PHASE1:Mm9::chr9:44809185..44809215,-#_6e4360c4d784533963e7e5e7025e59f4p@chr9:44809185..44809215, -
1.22e-58FFCP PHASE2:Mm9::chr2:11093788..11093799,+#_f4ebcda05f98d20221250dd5147dcb88p11@Prkcq
1.22e-58FFCP PHASE1:Mm9::chr2:11093788..11093799,+#_f4ebcda05f98d20221250dd5147dcb88p11@Prkcq
3.55e-58FFCP PHASE1:Mm9::chr14:54791784..54791787,+#_10f96d56ad4afa00bbd163097f8ace02p@chr14:54791784..54791787, +
3.55e-58FFCP PHASE2:Mm9::chr14:54791784..54791787,+#_10f96d56ad4afa00bbd163097f8ace02p@chr14:54791784..54791787, +
6.17e-58FFCP PHASE2:Mm9::chr6:40997465..40997489,+#_3d72901305244bb38c15911d44ce2560p1@ENSMUST00000103263
6.17e-58FFCP PHASE1:Mm9::chr6:40997465..40997489,+#_3d72901305244bb38c15911d44ce2560p1@ENSMUST00000103263
1.17e-57FFCP PHASE1:Mm9::chr10:28388454..28388458,+#_88cc903171308355e7c6c76e62d8c62ep5@Themis
1.17e-57FFCP PHASE2:Mm9::chr10:28388454..28388458,+#_88cc903171308355e7c6c76e62d8c62ep5@Themis
1.36e-57FFCP PHASE1:Mm9::chr6:41482920..41482933,+#_83bd00efb33fb970e35573dfa7f101b2p5@uc009bpa.1
1.36e-57FFCP PHASE2:Mm9::chr6:41482920..41482933,+#_83bd00efb33fb970e35573dfa7f101b2p5@uc009bpa.1
1.46e-57FFCP PHASE2:Mm9::chr9:44793518..44793537,+#_f66bffe4adccfa20b27dc34a407d4645p@chr9:44793518..44793537, +
1.46e-57FFCP PHASE1:Mm9::chr9:44793518..44793537,+#_f66bffe4adccfa20b27dc34a407d4645p@chr9:44793518..44793537, +
1.87e-57FFCP PHASE2:Mm9::chr6:41071548..41071565,+#_e7cd7f8eac81819493cd007585399d9bp@chr6:41071548..41071565, +
1.87e-57FFCP PHASE1:Mm9::chr6:41071548..41071565,+#_e7cd7f8eac81819493cd007585399d9b+, p@chr6:41071548..41071565
3.74e-57FFCP PHASE2:Mm9::chr6:40997323..40997349,+#_e7189c9c6ab3ac2c6608c650744a6c58p2@uc009bnp.1, p2@uc012eki.1
3.74e-57FFCP PHASE1:Mm9::chr6:40997323..40997349,+#_e7189c9c6ab3ac2c6608c650744a6c58p2@uc009bnp.1, p2@uc012eki.1
2.11e-56FFCP PHASE2:Mm9::chr11:52095797..52095809,-#_a2e1560e323b9e285b04258308fb0915p5@Tcf7
2.11e-56FFCP PHASE1:Mm9::chr11:52095797..52095809,-#_a2e1560e323b9e285b04258308fb0915p5@Tcf7
7.76e-56FFCP PHASE1:Mm9::chr14:61328148..61328173,+#_ae72c97c310d2af44131d5f3158e6a8bp@chr14:61328148..61328173, +
7.76e-56FFCP PHASE2:Mm9::chr14:61328148..61328173,+#_ae72c97c310d2af44131d5f3158e6a8bp@chr14:61328148..61328173, +
1.22e-55FFCP PHASE1:Mm9::chr6:41483016..41483036,+#_778f341df1da8a9cb7777667e466d9e1p2@uc009bpa.1
1.22e-55FFCP PHASE2:Mm9::chr6:41483016..41483036,+#_778f341df1da8a9cb7777667e466d9e1p2@uc009bpa.1
1.4e-55FFCP PHASE2:Mm9::chrX:39855684..39855699,+#_1c1eb623433fe781d0c17256e3889eacp2@Sh2d1a
1.4e-55FFCP PHASE1:Mm9::chrX:39855684..39855699,+#_1c1eb623433fe781d0c17256e3889eacp2@Sh2d1a
2.37e-55FFCP PHASE2:Mm9::chr6:41128981..41128995,+#_4839a7fa18371fbac588307e67ab956dp1@uc012ekr.1
2.37e-55FFCP PHASE1:Mm9::chr6:41128981..41128995,+#_4839a7fa18371fbac588307e67ab956dp1@uc012ekr.1
2.97e-55FFCP PHASE2:Mm9::chr6:40841675..40841691,+#_a7779aa3d215f00c7e121f18bd6c9ccdp2@1810009J06Rik
2.97e-55FFCP PHASE1:Mm9::chr6:40841675..40841691,+#_a7779aa3d215f00c7e121f18bd6c9ccdp2@1810009J06Rik
4.31e-55FFCP PHASE2:Mm9::chr6:41066036..41066054,+#_ecdbe70ce79a4f17490ce1900a150cdep1@uc012ekk.1
4.31e-55FFCP PHASE1:Mm9::chr6:41066036..41066054,+#_ecdbe70ce79a4f17490ce1900a150cdep1@uc012ekk.1
5.01e-55FFCP PHASE1:Mm9::chr6:41009432..41009454,+#_3494bdc10dbefe970bbec5a46bd664d2p1@ENSMUST00000103265
5.01e-55FFCP PHASE1:Mm9::chr6:41491943..41491953,+#_3494bdc10dbefe970bbec5a46bd664d2p3@uc009bpo.1, p3@uc009bpp.1
5.01e-55FFCP PHASE2:Mm9::chr6:41009432..41009454,+#_3494bdc10dbefe970bbec5a46bd664d2p1@ENSMUST00000103265
5.01e-55FFCP PHASE2:Mm9::chr6:41491943..41491953,+#_3494bdc10dbefe970bbec5a46bd664d2p3@uc009bpo.1, p3@uc009bpp.1
1.07e-54FFCP PHASE1:Mm9::chr7:133512043..133512060,-#_c93c77dd6b35f9b5cf3949c5033d4e30p@chr7:133512043..133512060, -
1.07e-54FFCP PHASE2:Mm9::chr7:133512043..133512060,-#_c93c77dd6b35f9b5cf3949c5033d4e30p@chr7:133512043..133512060, -
1.32e-54FFCP PHASE1:Mm9::chr6:41128837..41128859,+#_05a5bee7b845e18e60768be8e86c6502p2@Gm5409
1.32e-54FFCP PHASE2:Mm9::chr6:41128837..41128859,+#_05a5bee7b845e18e60768be8e86c6502p2@Gm5409
2.0e-54FFCP PHASE2:Mm9::chr16:48772258..48772270,-#_8317f74d1fe3bf202e496c3dfa817353p5@Trat1
2.0e-54FFCP PHASE1:Mm9::chr16:48772258..48772270,-#_8317f74d1fe3bf202e496c3dfa817353p5@Trat1
2.16e-54FFCP PHASE1:Hg19::chr11:94587086..94587097,+#_d7179257716c96c15b0f5c5a355faa25p19@AMOTL1
2.16e-54FFCP PHASE1:Hg19::chr14:22928012..22928031,+#_d7179257716c96c15b0f5c5a355faa25p3@uc001wea.3, p3@uc010ajt.2, p3@uc010aju.1
2.16e-54FFCP PHASE1:Hg19::chr21:42749543..42749555,+#_d7179257716c96c15b0f5c5a355faa25p@chr21:42749543..42749555, +
2.16e-54FFCP PHASE2:Hg19::chr21:42749543..42749555,+#_d7179257716c96c15b0f5c5a355faa25+, p@chr21:42749543..42749555
2.16e-54FFCP PHASE2:Hg19::chr11:94587086..94587097,+#_d7179257716c96c15b0f5c5a355faa25p19@AMOTL1
2.16e-54FFCP PHASE2:Hg19::chr14:22928012..22928031,+#_d7179257716c96c15b0f5c5a355faa25p3@uc001wea.3, p3@uc010ajt.2, p3@uc010aju.1
2.2e-54FFCP PHASE1:Mm9::chr16:48772215..48772256,-#_4de3a11bbde59c85a415b3ea37c652aep4@Trat1
2.2e-54FFCP PHASE2:Mm9::chr16:48772215..48772256,-#_4de3a11bbde59c85a415b3ea37c652aep4@Trat1
2.23e-54FFCP PHASE2:Mm9::chr6:41489240..41489252,+#_5964c7f32024816a9427526fbe412497p@chr6:41489240..41489252, +
2.23e-54FFCP PHASE1:Mm9::chr6:41489240..41489252,+#_5964c7f32024816a9427526fbe412497p@chr6:41489240..41489252, +
4.16e-54FFCP PHASE1:Mm9::chr6:41484314..41484337,+#_2b5100fd979d95bfe016c1f24e78c6c2p1@ENSMUST00000103286, p1@uc009bpg.1, p1@uc009bph.1
4.16e-54FFCP PHASE2:Mm9::chr6:41484314..41484337,+#_2b5100fd979d95bfe016c1f24e78c6c2p1@ENSMUST00000103286, p1@uc009bpg.1, p1@uc009bph.1
4.37e-54FFCP PHASE2:Mm9::chr6:41231266..41231303,+#_d5440fc9bf2872a6ead69664fe4802c1p1@ENSMUST00000103282
4.37e-54FFCP PHASE2:Mm9::chr6:41494376..41494389,-#_d5440fc9bf2872a6ead69664fe4802c1p@chr6:41494376..41494389, -
4.37e-54FFCP PHASE1:Mm9::chr6:41231266..41231303,+#_d5440fc9bf2872a6ead69664fe4802c1p1@ENSMUST00000103282
4.37e-54FFCP PHASE1:Mm9::chr6:41494376..41494389,-#_d5440fc9bf2872a6ead69664fe4802c1p@chr6:41494376..41494389, -
5.42e-54FFCP PHASE1:Mm9::chr6:41493801..41493826,+#_09e23114ba1902bd1a346573b65a0302p1@ENSMUST00000103298, p1@uc009bpy.1
5.42e-54FFCP PHASE2:Mm9::chr6:41493801..41493826,+#_09e23114ba1902bd1a346573b65a0302p1@ENSMUST00000103298, p1@uc009bpy.1
5.43e-54FFCP PHASE2:Mm9::chr14:54794540..54794554,+#_b7e58aadeb503493f9dc97569ea47bcfp@chr14:54794540..54794554, +
5.43e-54FFCP PHASE1:Mm9::chr14:54794540..54794554,+#_b7e58aadeb503493f9dc97569ea47bcfp@chr14:54794540..54794554, +
5.9e-54FFCP PHASE1:Mm9::chr14:54496363..54496388,+#_f589cb55d8dffce7cbb8f60d840818c4p@chr14:54496363..54496388, +
5.9e-54FFCP PHASE2:Mm9::chr14:54496363..54496388,+#_f589cb55d8dffce7cbb8f60d840818c4p@chr14:54496363..54496388, +
5.9e-54FFCP PHASE2:Mm9::chr6:41491801..41491815,-#_f589cb55d8dffce7cbb8f60d840818c4p@chr6:41491801..41491815, -
5.9e-54FFCP PHASE1:Mm9::chr6:41491801..41491815,-#_f589cb55d8dffce7cbb8f60d840818c4p@chr6:41491801..41491815, -
6.18e-54FFCP PHASE1:Mm9::chr6:41492643..41492662,+#_d4631a5c2bc91fb24c9d4b83d84953adp@chr6:41492643..41492662, +
6.18e-54FFCP PHASE2:Mm9::chr6:41492643..41492662,+#_d4631a5c2bc91fb24c9d4b83d84953adp@chr6:41492643..41492662, +
6.96e-54FFCP PHASE2:Mm9::chr11:53448200..53448205,-#_50ecfdf11c5f60a15d0d8bc8698e3eb7p1@Il13
6.96e-54FFCP PHASE1:Mm9::chr11:53448200..53448205,-#_50ecfdf11c5f60a15d0d8bc8698e3eb7p1@Il13
7.53e-54FFCP PHASE2:Mm9::chr6:41492605..41492621,+#_82f4f67521de0a79a19be71767ba5024p@chr6:41492605..41492621, +
7.53e-54FFCP PHASE1:Mm9::chr6:41492605..41492621,+#_82f4f67521de0a79a19be71767ba5024p@chr6:41492605..41492621, +
7.54e-54FFCP PHASE1:Mm9::chr7:133512914..133512925,-#_b71b4593a721009088df22331daa3140p7@Lat
7.54e-54FFCP PHASE2:Mm9::chr7:133512914..133512925,-#_b71b4593a721009088df22331daa3140p7@Lat
8.18e-54FFCP PHASE1:Mm9::chr6:41138311..41138333,+#_af305a5bee2e856ca71757be72c7e88ep@chr6:41138311..41138333, +
8.18e-54FFCP PHASE2:Mm9::chr6:41138311..41138333,+#_af305a5bee2e856ca71757be72c7e88ep@chr6:41138311..41138333, +
1.05e-53FFCP PHASE2:Mm9::chr6:40996879..40996890,+#_26e7a7851c8ae3d0e03b1779c67e11a4p5@uc009bnp.1, p5@uc012eki.1
1.05e-53FFCP PHASE1:Mm9::chr6:40996879..40996890,+#_26e7a7851c8ae3d0e03b1779c67e11a4p5@uc009bnp.1, p5@uc012eki.1
1.16e-53FFCP PHASE2:Mm9::chr6:41483146..41483158,+#_21aa7c8a8c0930465245bd5a1d382439p6@uc009bpa.1
1.16e-53FFCP PHASE2:Mm9::chr7:133512935..133512936,-#_21aa7c8a8c0930465245bd5a1d382439p8@Lat
1.16e-53FFCP PHASE1:Mm9::chr4:125978325..125978339,-#_21aa7c8a8c0930465245bd5a1d382439p@chr4:125978325..125978339, -
1.16e-53FFCP PHASE2:Mm9::chr4:125978325..125978339,-#_21aa7c8a8c0930465245bd5a1d382439p@chr4:125978325..125978339, -










Property "Property value" (as page type) with input value "UBPROP:0000001 "Anatomical cavity bounded by the derivatives of the branchial arches.[AAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.