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UBERON:0007195

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Name:stroma of bone marrow
Namespace:FANTOM
Definition:"The stroma of the bone marrow is all tissue not directly involved in the primary function of hematopoiesis. The yellow bone marrow belongs here, and makes the majority of the bone marrow stroma, in addition to stromal cells located in the red bone marrow. Yellow bone marrow is found in the Medullary cavity. Still, the stroma is indirectly involved in hematopoiesis, since it provides the hematopoietic microenvironment that facilitates hematopoiesis by the parenchymal cells. For instance, they generate colony stimulating factors, affecting hematopoiesis." [Wikipedia:Bone_marrow#Stroma]
Xrefs:
links:
FMA:21426
Synonyms: "bone marrow stroma" EXACT [FMA:21426]

Ontology association
Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.

link to ontology dataset
data


Parents

is_a:UBERON:0002384(connective tissue),UBERON:0004120(mesoderm-derived structure)
part_of:UBERON:0002371(bone marrow)



Children

derives from:FF:0103296 (bone marrow stromal cell line sample)

Ontology Tree: Loaded from BioPortal


FF samples
It includes FANTOM5 samples that overlay the Uberon ontology


Human (Homo sapiens)

  • 10686-109F2 (bone marrow stromal cell line:StromaNKtert)


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0007195 (stroma of bone marrow), sorted by p-values
Analyst: Hideya Kawaji

link to source dataset
human : data
mouse : data


P-valueFFCPShort description
5.42e-195FFCP PHASE2:Hg19::chr10:132684824..132684837,+#_7f4f8f938ed2a58f1051e6c27e5a9fe2p@chr10:132684824..132684837, +
5.42e-195FFCP PHASE1:Hg19::chr10:132684824..132684837,+#_7f4f8f938ed2a58f1051e6c27e5a9fe2p@chr10:132684824..132684837, +
9.37e-99FFCP PHASE2:Hg19::chr7:20784945..20784950,+#_13b0479e9912ba70d329ab2e62af57a1p@chr7:20784945..20784950, +
9.37e-99FFCP PHASE1:Hg19::chr7:20784945..20784950,+#_13b0479e9912ba70d329ab2e62af57a1p@chr7:20784945..20784950, +
2.55e-98FFCP PHASE1:Hg19::chr7:114026271..114026287,-#_68052170b935764f189515046601e04dp@chr7:114026271..114026287, -
2.55e-98FFCP PHASE2:Hg19::chr6:132527234..132527248,+#_68052170b935764f189515046601e04dp@chr6:132527234..132527248, +
2.55e-98FFCP PHASE2:Hg19::chr11:86106370..86106377,+#_68052170b935764f189515046601e04dp14@CCDC81
2.55e-98FFCP PHASE1:Hg19::chr13:93057514..93057522,-#_68052170b935764f189515046601e04dp@chr13:93057514..93057522, -
2.55e-98FFCP PHASE2:Hg19::chr4:86748774..86748823,+#_68052170b935764f189515046601e04dp33@ARHGAP24
2.55e-98FFCP PHASE2:Hg19::chr13:23479449..23479452,+#_68052170b935764f189515046601e04dp@chr13:23479449..23479452, +
2.55e-98FFCP PHASE1:Hg19::chr17:38152590..38152594,+#_68052170b935764f189515046601e04dp@chr17:38152590..38152594, +
2.55e-98FFCP PHASE1:Hg19::chr13:31611296..31611303,-#_68052170b935764f189515046601e04d-, p@chr13:31611296..31611303
2.55e-98FFCP PHASE2:Hg19::chr1:62928606..62928608,+#_68052170b935764f189515046601e04dp@chr1:62928606..62928608, +
2.55e-98FFCP PHASE2:Hg19::chr7:114026271..114026287,-#_68052170b935764f189515046601e04dp@chr7:114026271..114026287, -
2.55e-98FFCP PHASE2:Hg19::chr7:79818490..79818497,+#_68052170b935764f189515046601e04d+, p@chr7:79818490..79818497
2.55e-98FFCP PHASE1:Hg19::chr7:79818490..79818497,+#_68052170b935764f189515046601e04d+, p@chr7:79818490..79818497
2.55e-98FFCP PHASE1:Hg19::chr4:86748774..86748823,+#_68052170b935764f189515046601e04dp33@ARHGAP24
2.55e-98FFCP PHASE1:Hg19::chr8:136769096..136769108,-#_68052170b935764f189515046601e04dp@chr8:136769096..136769108, -
2.55e-98FFCP PHASE2:Hg19::chr13:93057514..93057522,-#_68052170b935764f189515046601e04dp@chr13:93057514..93057522, -
2.55e-98FFCP PHASE1:Hg19::chr6:132527234..132527248,+#_68052170b935764f189515046601e04dp@chr6:132527234..132527248, +
2.55e-98FFCP PHASE1:Hg19::chr13:23479449..23479452,+#_68052170b935764f189515046601e04dp@chr13:23479449..23479452, +
2.55e-98FFCP PHASE1:Hg19::chr16:85190888..85190894,-#_68052170b935764f189515046601e04dp@chr16:85190888..85190894, -
2.55e-98FFCP PHASE1:Hg19::chr1:233860255..233860261,+#_68052170b935764f189515046601e04dp2@BC032032
2.55e-98FFCP PHASE2:Hg19::chr13:31611296..31611303,-#_68052170b935764f189515046601e04dp@chr13:31611296..31611303, -
2.55e-98FFCP PHASE2:Hg19::chr17:38152590..38152594,+#_68052170b935764f189515046601e04dp@chr17:38152590..38152594, +
2.55e-98FFCP PHASE2:Hg19::chr12:12492047..12492055,-#_68052170b935764f189515046601e04dp19@MANSC1
2.55e-98FFCP PHASE1:Hg19::chr11:503521..503525,-#_68052170b935764f189515046601e04dp26@RNH1
2.55e-98FFCP PHASE2:Hg19::chr16:85190888..85190894,-#_68052170b935764f189515046601e04dp@chr16:85190888..85190894, -
2.55e-98FFCP PHASE2:Hg19::chr8:136769096..136769108,-#_68052170b935764f189515046601e04dp@chr8:136769096..136769108, -
2.55e-98FFCP PHASE2:Hg19::chr2:933319..933328,-#_68052170b935764f189515046601e04dp@chr2:933319..933328, -
2.55e-98FFCP PHASE1:Hg19::chr12:12492047..12492055,-#_68052170b935764f189515046601e04dp19@MANSC1
2.55e-98FFCP PHASE1:Hg19::chr15:33390492..33390496,-#_68052170b935764f189515046601e04dp@chr15:33390492..33390496, -
2.55e-98FFCP PHASE1:Hg19::chr1:62928606..62928608,+#_68052170b935764f189515046601e04dp@chr1:62928606..62928608, +
2.55e-98FFCP PHASE1:Hg19::chr2:933319..933328,-#_68052170b935764f189515046601e04dp@chr2:933319..933328, -
2.55e-98FFCP PHASE2:Hg19::chr1:233860255..233860261,+#_68052170b935764f189515046601e04dp2@BC032032
2.55e-98FFCP PHASE1:Hg19::chr11:86106370..86106377,+#_68052170b935764f189515046601e04dp14@CCDC81
2.55e-98FFCP PHASE1:Hg19::chr8:48859742..48859752,-#_68052170b935764f189515046601e04dp@chr8:48859742..48859752, -
2.55e-98FFCP PHASE2:Hg19::chr15:33390492..33390496,-#_68052170b935764f189515046601e04dp@chr15:33390492..33390496, -
2.55e-98FFCP PHASE2:Hg19::chr8:48859742..48859752,-#_68052170b935764f189515046601e04dp@chr8:48859742..48859752, -
2.55e-98FFCP PHASE2:Hg19::chr11:503521..503525,-#_68052170b935764f189515046601e04dp26@RNH1
1.23e-66FFCP PHASE2:Hg19::chr7:68782112..68782118,+#_54eae31a73f17e11c5be4595e94b2511p@chr7:68782112..68782118, +
1.23e-66FFCP PHASE1:Hg19::chr7:68782112..68782118,+#_54eae31a73f17e11c5be4595e94b2511p@chr7:68782112..68782118, +
1.23e-66FFCP PHASE2:Hg19::chr2:221311010..221311014,+#_54eae31a73f17e11c5be4595e94b2511p@chr2:221311010..221311014, +
1.23e-66FFCP PHASE1:Hg19::chr4:180555424..180555428,+#_54eae31a73f17e11c5be4595e94b2511p@chr4:180555424..180555428, +
1.23e-66FFCP PHASE1:Hg19::chr2:221311010..221311014,+#_54eae31a73f17e11c5be4595e94b2511p@chr2:221311010..221311014, +
1.23e-66FFCP PHASE2:Hg19::chr4:180555424..180555428,+#_54eae31a73f17e11c5be4595e94b2511p@chr4:180555424..180555428, +
2.39e-66FFCP PHASE2:Hg19::chr6:33145331..33145378,-#_f50a2d04a6694cef65bf1a842eb5b165p@chr6:33145331..33145378, -
2.39e-66FFCP PHASE2:Hg19::chr13:23474099..23474105,-#_f50a2d04a6694cef65bf1a842eb5b165p@chr13:23474099..23474105, -
2.39e-66FFCP PHASE2:Hg19::chr13:88463369..88463374,-#_f50a2d04a6694cef65bf1a842eb5b165p3@BC040238
2.39e-66FFCP PHASE1:Hg19::chr1:120285422..120285431,+#_f50a2d04a6694cef65bf1a842eb5b165p10@PHGDH
2.39e-66FFCP PHASE2:Hg19::chr13:45048408..45048415,-#_f50a2d04a6694cef65bf1a842eb5b165p80@TSC22D1
2.39e-66FFCP PHASE2:Hg19::chr1:120285422..120285431,+#_f50a2d04a6694cef65bf1a842eb5b165p10@PHGDH
2.39e-66FFCP PHASE1:Hg19::chr13:23474099..23474105,-#_f50a2d04a6694cef65bf1a842eb5b165p@chr13:23474099..23474105, -
2.39e-66FFCP PHASE2:Hg19::chr15:48442084..48442096,-#_f50a2d04a6694cef65bf1a842eb5b165p9@MYEF2
2.39e-66FFCP PHASE1:Hg19::chr15:48442084..48442096,-#_f50a2d04a6694cef65bf1a842eb5b165p9@MYEF2
2.39e-66FFCP PHASE1:Hg19::chr13:45048408..45048415,-#_f50a2d04a6694cef65bf1a842eb5b165p80@TSC22D1
2.39e-66FFCP PHASE1:Hg19::chr6:33145331..33145378,-#_f50a2d04a6694cef65bf1a842eb5b165p@chr6:33145331..33145378, -
2.39e-66FFCP PHASE1:Hg19::chr13:88463369..88463374,-#_f50a2d04a6694cef65bf1a842eb5b165p3@BC040238
4.66e-66FFCP PHASE1:Hg19::chr2:202562827..202562835,-#_8dba9538c7147f7980eef1ec461916eap10@MPP4
4.66e-66FFCP PHASE1:Hg19::chr12:38493362..38493371,+#_8dba9538c7147f7980eef1ec461916eap@chr12:38493362..38493371, +
4.66e-66FFCP PHASE1:Hg19::chr5:17302742..17302760,-#_8dba9538c7147f7980eef1ec461916eap@chr5:17302742..17302760, -
4.66e-66FFCP PHASE2:Hg19::chr10:85915432..85915435,-#_8dba9538c7147f7980eef1ec461916eap@chr10:85915432..85915435, -
4.66e-66FFCP PHASE2:Hg19::chr5:17302742..17302760,-#_8dba9538c7147f7980eef1ec461916eap@chr5:17302742..17302760, -
4.66e-66FFCP PHASE2:Hg19::chr1:25215144..25215151,+#_8dba9538c7147f7980eef1ec461916eap@chr1:25215144..25215151, +
4.66e-66FFCP PHASE1:Hg19::chr5:37371278..37371289,-#_8dba9538c7147f7980eef1ec461916eap9@NUP155
4.66e-66FFCP PHASE1:Hg19::chr17:46262278..46262285,-#_8dba9538c7147f7980eef1ec461916eap@chr17:46262278..46262285, -
4.66e-66FFCP PHASE1:Hg19::chr2:96943971..96943976,-#_8dba9538c7147f7980eef1ec461916eap31@SNRNP200
4.66e-66FFCP PHASE2:Hg19::chr3:156502182..156502186,+#_8dba9538c7147f7980eef1ec461916eap@chr3:156502182..156502186, +
4.66e-66FFCP PHASE2:Hg19::chr2:202562827..202562835,-#_8dba9538c7147f7980eef1ec461916eap10@MPP4
4.66e-66FFCP PHASE2:Hg19::chr7:75958094..75958103,-#_8dba9538c7147f7980eef1ec461916eap@chr7:75958094..75958103, -
4.66e-66FFCP PHASE1:Hg19::chr7:112635723..112635728,-#_8dba9538c7147f7980eef1ec461916eap4@ENST00000451962
4.66e-66FFCP PHASE1:Hg19::chr1:25215144..25215151,+#_8dba9538c7147f7980eef1ec461916eap@chr1:25215144..25215151, +
4.66e-66FFCP PHASE1:Hg19::chr11:109773840..109773869,-#_8dba9538c7147f7980eef1ec461916eap@chr11:109773840..109773869, -
4.66e-66FFCP PHASE2:Hg19::chr13:71293232..71293241,+#_8dba9538c7147f7980eef1ec461916eap@chr13:71293232..71293241, +
4.66e-66FFCP PHASE2:Hg19::chr5:37371278..37371289,-#_8dba9538c7147f7980eef1ec461916eap9@NUP155
4.66e-66FFCP PHASE1:Hg19::chr3:156502182..156502186,+#_8dba9538c7147f7980eef1ec461916eap@chr3:156502182..156502186, +
4.66e-66FFCP PHASE2:Hg19::chr12:38493362..38493371,+#_8dba9538c7147f7980eef1ec461916eap@chr12:38493362..38493371, +
4.66e-66FFCP PHASE2:Hg19::chr11:109773840..109773869,-#_8dba9538c7147f7980eef1ec461916eap@chr11:109773840..109773869, -
4.66e-66FFCP PHASE1:Hg19::chr19:21452713..21452724,-#_8dba9538c7147f7980eef1ec461916eap@chr19:21452713..21452724, -
4.66e-66FFCP PHASE2:Hg19::chr19:21452713..21452724,-#_8dba9538c7147f7980eef1ec461916eap@chr19:21452713..21452724, -
4.66e-66FFCP PHASE1:Hg19::chr7:75958094..75958103,-#_8dba9538c7147f7980eef1ec461916eap@chr7:75958094..75958103, -
4.66e-66FFCP PHASE2:Hg19::chr17:46262278..46262285,-#_8dba9538c7147f7980eef1ec461916eap@chr17:46262278..46262285, -
4.66e-66FFCP PHASE2:Hg19::chr7:112635723..112635728,-#_8dba9538c7147f7980eef1ec461916eap4@ENST00000451962
4.66e-66FFCP PHASE2:Hg19::chr4:186854595..186854606,-#_8dba9538c7147f7980eef1ec461916eap73@SORBS2
4.66e-66FFCP PHASE2:Hg19::chr2:96943971..96943976,-#_8dba9538c7147f7980eef1ec461916eap31@SNRNP200
4.66e-66FFCP PHASE1:Hg19::chr10:85915432..85915435,-#_8dba9538c7147f7980eef1ec461916eap@chr10:85915432..85915435, -
4.66e-66FFCP PHASE2:Hg19::chr1:156521881..156521893,-#_8dba9538c7147f7980eef1ec461916eap4@IQGAP3
4.66e-66FFCP PHASE1:Hg19::chr1:156521881..156521893,-#_8dba9538c7147f7980eef1ec461916eap4@IQGAP3
4.66e-66FFCP PHASE1:Hg19::chr13:71293232..71293241,+#_8dba9538c7147f7980eef1ec461916eap@chr13:71293232..71293241, +
4.66e-66FFCP PHASE1:Hg19::chr4:186854595..186854606,-#_8dba9538c7147f7980eef1ec461916eap73@SORBS2
2.42e-50FFCP PHASE2:Hg19::chr6:18153083..18153085,-#_53955b19ab12d9db2e20741251c16056p@chr6:18153083..18153085, -
2.42e-50FFCP PHASE1:Hg19::chr14:36642956..36642966,+#_53955b19ab12d9db2e20741251c16056p@chr14:36642956..36642966, +
2.42e-50FFCP PHASE1:Hg19::chr5:174252850..174252859,+#_53955b19ab12d9db2e20741251c16056p@chr5:174252850..174252859, +
2.42e-50FFCP PHASE2:Hg19::chr5:174252850..174252859,+#_53955b19ab12d9db2e20741251c16056p@chr5:174252850..174252859, +
2.42e-50FFCP PHASE2:Hg19::chr14:36642956..36642966,+#_53955b19ab12d9db2e20741251c16056p@chr14:36642956..36642966, +
2.42e-50FFCP PHASE2:Hg19::chr18:67285940..67285954,-#_53955b19ab12d9db2e20741251c16056p@chr18:67285940..67285954, -
2.42e-50FFCP PHASE2:Hg19::chr6:133319184..133319185,-#_53955b19ab12d9db2e20741251c16056p1@RPL23AP46
2.42e-50FFCP PHASE1:Hg19::chr11:117152220..117152232,+#_53955b19ab12d9db2e20741251c16056p11@RNF214
2.42e-50FFCP PHASE1:Hg19::chr18:67285940..67285954,-#_53955b19ab12d9db2e20741251c16056p@chr18:67285940..67285954, -
2.42e-50FFCP PHASE2:Hg19::chr11:117152220..117152232,+#_53955b19ab12d9db2e20741251c16056p11@RNF214