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UBERON:0007685

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Name:region of nephron tubule
Namespace:FANTOM
Xrefs:
links:
FMA:17692
Synonyms: "renal tubule region" EXACT [FMA:17692]
Comments:note - consider moving MA:0000377 renal tubule here, as it includes the various segments (proximal etc) as subclasses, not parts

Ontology association
Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.

link to ontology dataset
data

Parents

is_a:UBERON:0001231(nephron tubule),UBERON:0004810(nephron tubule epithelium)
part_of:UBERON:0001231(nephron tubule)



Children

is a:UBERON:0006853 (renal cortex tubule)

Ontology Tree: Loaded from BioPortal


FF samples
It includes FANTOM5 samples that overlay the Uberon ontology

Human (Homo sapiens)

  • 11515-119H3 (Renal Proximal Tubular Epithelial Cell, donor1)
  • 11595-120H2 (Renal Proximal Tubular Epithelial Cell, donor2)
  • 11676-122H2 (Renal Proximal Tubular Epithelial Cell, donor3)


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0007685 (region of nephron tubule), sorted by p-values
Analyst: Hideya Kawaji

link to source dataset
human : data
mouse : data

P-valueFFCPShort description
8.98e-131FFCP PHASE2:Hg19::chr5:167718782..167718785,+#_da593697acae46596f993cb1b1ea63b5p10@WWC1
8.98e-131FFCP PHASE1:Hg19::chr5:167718782..167718785,+#_da593697acae46596f993cb1b1ea63b5p10@WWC1
1.01e-74FFCP PHASE2:Hg19::chr3:149260147..149260154,-#_1cb7fc90afd84bf055260aa031abcdb0p39@WWTR1
1.01e-74FFCP PHASE1:Hg19::chr3:149260147..149260154,-#_1cb7fc90afd84bf055260aa031abcdb0p39@WWTR1
1.24e-73FFCP PHASE2:Hg19::chr17:46679250..46679298,+#_337ef0f82b375da9d3ed9d07d87b9591p1@ENST00000491264
1.24e-73FFCP PHASE1:Hg19::chr17:46679250..46679298,+#_337ef0f82b375da9d3ed9d07d87b9591p1@ENST00000491264
2.39e-66FFCP PHASE1:Hg19::chr8:6614884..6614885,+#_e2147b2db9a47f2d16fadcc02c351140p@chr8:6614884..6614885, +
2.39e-66FFCP PHASE2:Hg19::chr16:61687533..61687551,-#_e2147b2db9a47f2d16fadcc02c351140p@chr16:61687533..61687551, -
2.39e-66FFCP PHASE1:Hg19::chr16:61687533..61687551,-#_e2147b2db9a47f2d16fadcc02c351140p@chr16:61687533..61687551, -
2.39e-66FFCP PHASE2:Hg19::chr16:62055187..62055188,+#_e2147b2db9a47f2d16fadcc02c351140p@chr16:62055187..62055188, +
2.39e-66FFCP PHASE1:Hg19::chr16:62055187..62055188,+#_e2147b2db9a47f2d16fadcc02c351140p@chr16:62055187..62055188, +
2.39e-66FFCP PHASE1:Hg19::chr3:123667850..123667851,+#_e2147b2db9a47f2d16fadcc02c351140p@chr3:123667850..123667851, +
2.39e-66FFCP PHASE2:Hg19::chr3:123667850..123667851,+#_e2147b2db9a47f2d16fadcc02c351140p@chr3:123667850..123667851, +
2.39e-66FFCP PHASE2:Hg19::chr8:6614884..6614885,+#_e2147b2db9a47f2d16fadcc02c351140p@chr8:6614884..6614885, +
1.22e-59FFCP PHASE2:Hg19::chr15:66420804..66420837,-#_7b6ebff80b632aae6cd86472ae193c66p4@MEGF11
1.22e-59FFCP PHASE1:Hg19::chr15:66420804..66420837,-#_7b6ebff80b632aae6cd86472ae193c66p4@MEGF11
3.75e-53FFCP PHASE2:Hg19::chr9:114828174..114828179,+#_25134089287bbd8e8bb5f4345b61ad30p@chr9:114828174..114828179, +
3.75e-53FFCP PHASE1:Hg19::chr9:114828174..114828179,+#_25134089287bbd8e8bb5f4345b61ad30p@chr9:114828174..114828179, +
1.65e-46FFCP PHASE2:Hg19::chr7:140227349..140227360,-#_1d04b36bbcfd24f2fefcd2017fc0758bp@chr7:140227349..140227360, -
1.65e-46FFCP PHASE1:Hg19::chr7:140227349..140227360,-#_1d04b36bbcfd24f2fefcd2017fc0758bp@chr7:140227349..140227360, -
7.81e-45FFCP PHASE2:Hg19::chr6:30890373..30890381,+#_b16de202d6fe431b163c11b95aec6ac2p9@VARS2
7.81e-45FFCP PHASE1:Hg19::chr6:30890373..30890381,+#_b16de202d6fe431b163c11b95aec6ac2p9@VARS2
6.91e-39FFCP PHASE2:Hg19::chr6:30890456..30890482,+#_a1dfa34ee4d1daba3affbe252a1471f2p11@VARS2
6.91e-39FFCP PHASE1:Hg19::chr6:30890456..30890482,+#_a1dfa34ee4d1daba3affbe252a1471f2p11@VARS2
1.49e-38FFCP PHASE1:Hg19::chr11:33718564..33718585,-#_7e20b8a8be7786b1c0cadc71cd4f775dp1@ENST00000534431
1.49e-38FFCP PHASE2:Hg19::chr11:33718564..33718585,-#_7e20b8a8be7786b1c0cadc71cd4f775dp1@ENST00000534431
2.64e-38FFCP PHASE2:Hg19::chr7:53466339..53466356,-#_9ae3534218038ea4ea1060cc47cec926p@chr7:53466339..53466356, -
2.64e-38FFCP PHASE1:Hg19::chr7:53466339..53466356,-#_9ae3534218038ea4ea1060cc47cec926p@chr7:53466339..53466356, -
3.48e-38FFCP PHASE2:Hg19::chr17:18160552..18160565,-#_e27a6b2093c1e634eb5626fc11345a4fp@chr17:18160552..18160565, -
3.48e-38FFCP PHASE1:Hg19::chr17:18160552..18160565,-#_e27a6b2093c1e634eb5626fc11345a4fp@chr17:18160552..18160565, -
3.86e-38FFCP PHASE2:Hg19::chr3:190105820..190105829,+#_0223d8252d3b228fb9ab214853c74b05p3@CLDN16
3.86e-38FFCP PHASE1:Hg19::chr3:190105820..190105829,+#_0223d8252d3b228fb9ab214853c74b05p3@CLDN16
5.76e-38FFCP PHASE1:Hg19::chr1:1100457..1100470,+#_c9aeff9808be2a9e4a8ff0878017baeep@chr1:1100457..1100470, +
5.76e-38FFCP PHASE2:Hg19::chr1:1100457..1100470,+#_c9aeff9808be2a9e4a8ff0878017baeep@chr1:1100457..1100470, +
2.08e-36FFCP PHASE1:Hg19::chr9:133986782..133986794,+#_beff0280354881675ed77085c74ac4d5p4@AIF1L
2.08e-36FFCP PHASE2:Hg19::chr9:133986782..133986794,+#_beff0280354881675ed77085c74ac4d5p4@AIF1L
2.25e-35FFCP PHASE1:Hg19::chr10:102495147..102495159,+#_1969ba2794944a79334eddc075739dbfp4@PAX2
2.25e-35FFCP PHASE2:Hg19::chr10:102495147..102495159,+#_1969ba2794944a79334eddc075739dbfp4@PAX2
3.2e-35FFCP PHASE2:Hg19::chr12:6485243..6485254,-#_1c75ca9bfd46f9618b0d7912e1537b69p18@SCNN1A
3.2e-35FFCP PHASE1:Hg19::chr12:6485243..6485254,-#_1c75ca9bfd46f9618b0d7912e1537b69p18@SCNN1A
5.96e-34FFCP PHASE1:Hg19::chr6:31023284..31023287,-#_df0ef25007a958b8e5720fb5949e22b6p@chr6:31023284..31023287, -
5.96e-34FFCP PHASE2:Hg19::chr6:31023284..31023287,-#_df0ef25007a958b8e5720fb5949e22b6p@chr6:31023284..31023287, -
2.09e-33FFCP PHASE2:Hg19::chr2:113994209..113994222,-#_5ba3b8b57bbb61b5656aee827f2549abp11@PAX8
2.09e-33FFCP PHASE1:Hg19::chr2:113994209..113994222,-#_5ba3b8b57bbb61b5656aee827f2549abp11@PAX8
1.41e-32FFCP PHASE2:Hg19::chr14:57960456..57960478,-#_e14b7effdffb203b59a4450c01d7fed0p2@C14orf105
1.41e-32FFCP PHASE1:Hg19::chr14:57960456..57960478,-#_e14b7effdffb203b59a4450c01d7fed0p2@C14orf105
2.17e-32FFCP PHASE2:Hg19::chr3:190105935..190105966,+#_fcf9d49a34a1258e2264da90c98303e9p1@CLDN16
2.17e-32FFCP PHASE1:Hg19::chr3:190105935..190105966,+#_fcf9d49a34a1258e2264da90c98303e9p1@CLDN16
3.1e-30FFCP PHASE2:Hg19::chr3:112127710..112127713,-#_09a5545ab769ff874aae9a1e8c8c5b55p@chr3:112127710..112127713, -
3.1e-30FFCP PHASE1:Hg19::chr3:112127710..112127713,-#_09a5545ab769ff874aae9a1e8c8c5b55p@chr3:112127710..112127713, -
4.84e-30FFCP PHASE1:Hg19::chr20:49347516..49347535,-#_b8ab2e23910909321137980359cb67b5p@chr20:49347516..49347535, -
4.84e-30FFCP PHASE2:Hg19::chr20:49347516..49347535,-#_b8ab2e23910909321137980359cb67b5p@chr20:49347516..49347535, -
6.17e-30FFCP PHASE1:Hg19::chr6:30890348..30890372,+#_3b09bdb04d0601ac9b8b61381344644ep5@VARS2
6.17e-30FFCP PHASE2:Hg19::chr6:30890348..30890372,+#_3b09bdb04d0601ac9b8b61381344644ep5@VARS2
8.26e-30FFCP PHASE1:Hg19::chr9:133986807..133986821,+#_af0e7cd68f6bf8cc9fc79b73ecc36e99p3@AIF1L
8.26e-30FFCP PHASE2:Hg19::chr9:133986807..133986821,+#_af0e7cd68f6bf8cc9fc79b73ecc36e99p3@AIF1L
8.74e-30FFCP PHASE1:Hg19::chr3:190106002..190106011,+#_f582dd0a6f2dad25205aa319ad30a410p4@CLDN16
8.74e-30FFCP PHASE2:Hg19::chr3:190106002..190106011,+#_f582dd0a6f2dad25205aa319ad30a410p4@CLDN16
4.28e-29FFCP PHASE2:Hg19::chr7:7606139..7606151,-#_65edd6dd9ecac08b4510627b7b2eb0f2p@chr7:7606139..7606151, -
4.28e-29FFCP PHASE1:Hg19::chr7:7606139..7606151,-#_65edd6dd9ecac08b4510627b7b2eb0f2p@chr7:7606139..7606151, -
5.09e-29FFCP PHASE2:Hg19::chr6:30890599..30890626,+#_ade8ed72dd47686c5975f92738cfc447p4@VARS2
5.09e-29FFCP PHASE1:Hg19::chr6:30890599..30890626,+#_ade8ed72dd47686c5975f92738cfc447p4@VARS2
4.74e-28FFCP PHASE1:Hg19::chr11:117695245..117695263,-#_644bcd60a5c30282e4d82132f0b1969cp7@FXYD2
4.74e-28FFCP PHASE2:Hg19::chr11:117695245..117695263,-#_644bcd60a5c30282e4d82132f0b1969cp7@FXYD2
2.38e-27FFCP PHASE1:Hg19::chr11:117695233..117695244,-#_468f68db37c6960e715973aa18401162p11@FXYD2
2.38e-27FFCP PHASE2:Hg19::chr11:117695233..117695244,-#_468f68db37c6960e715973aa18401162p11@FXYD2
3.11e-27FFCP PHASE1:Hg19::chr10:91043499..91043510,+#_00a172544b1d15f1b3647bca899489e2p2@ENST00000354541
3.11e-27FFCP PHASE2:Hg19::chr10:91043499..91043510,+#_00a172544b1d15f1b3647bca899489e2p2@ENST00000354541
5.07e-27FFCP PHASE2:Hg19::chr1:17519128..17519138,+#_6b3bb02a9837de36bbd4776c35cf2714p@chr1:17519128..17519138, +
5.07e-27FFCP PHASE1:Hg19::chr1:17519128..17519138,+#_6b3bb02a9837de36bbd4776c35cf2714p@chr1:17519128..17519138, +
1.22e-26FFCP PHASE2:Hg19::chr18:77104123..77104150,+#_acc767652170d1a13cca61ed8fc3a93ap5@ATP9B
1.22e-26FFCP PHASE1:Hg19::chr18:77104123..77104150,+#_acc767652170d1a13cca61ed8fc3a93ap5@ATP9B
2.01e-25FFCP PHASE2:Hg19::chr7:98453821..98453843,-#_26957461d0f3ddaf29c6beec6f7acd0d-, p@chr7:98453821..98453843
2.01e-25FFCP PHASE1:Hg19::chr7:98453821..98453843,-#_26957461d0f3ddaf29c6beec6f7acd0dp@chr7:98453821..98453843, -
4.31e-25FFCP PHASE2:Hg19::chr9:133986740..133986750,+#_4cadfe112d34f807ab8282ddbee0c567p7@AIF1L
4.31e-25FFCP PHASE2:Hg19::chr2:167467988..167467993,-#_4cadfe112d34f807ab8282ddbee0c567p@chr2:167467988..167467993, -
4.31e-25FFCP PHASE1:Hg19::chr2:167467988..167467993,-#_4cadfe112d34f807ab8282ddbee0c567p@chr2:167467988..167467993, -
4.31e-25FFCP PHASE1:Hg19::chr9:133986740..133986750,+#_4cadfe112d34f807ab8282ddbee0c567p7@AIF1L
5.5e-25FFCP PHASE2:Hg19::chr2:189157368..189157381,-#_32f7321c24594c1ec0c7a1452b8b0490p@chr2:189157368..189157381, -
5.5e-25FFCP PHASE1:Hg19::chr2:189157368..189157381,-#_32f7321c24594c1ec0c7a1452b8b0490p@chr2:189157368..189157381, -
7.93e-25FFCP PHASE2:Hg19::chr9:119741711..119741743,-#_4f25d3ba94522c1c9881ddcf56dd292ap@chr9:119741711..119741743, -
7.93e-25FFCP PHASE1:Hg19::chr9:119741711..119741743,-#_4f25d3ba94522c1c9881ddcf56dd292ap@chr9:119741711..119741743, -
8.07e-25FFCP PHASE2:Hg19::chr19:51472081..51472088,-#_22e911b632f0da6610e128bde96b0a41p8@KLK6
8.07e-25FFCP PHASE1:Hg19::chr19:51472081..51472088,-#_22e911b632f0da6610e128bde96b0a41p8@KLK6
1.21e-24FFCP PHASE2:Hg19::chr7:27219833..27219845,-#_444fd293424a82d7c40006ff67d50761p7@HOXA10
1.21e-24FFCP PHASE1:Hg19::chr7:27219833..27219845,-#_444fd293424a82d7c40006ff67d50761p7@HOXA10
1.29e-24FFCP PHASE2:Hg19::chr20:6034241..6034256,-#_35a74ae84aafa78910913d13035f7921-, p@chr20:6034241..6034256
1.29e-24FFCP PHASE1:Hg19::chr20:6034241..6034256,-#_35a74ae84aafa78910913d13035f7921p@chr20:6034241..6034256, -
7.91e-24FFCP PHASE1:Hg19::chr11:117695415..117695426,-#_fd91614e982f6d70bd6b3eb5b918fdddp3@FXYD2
7.91e-24FFCP PHASE2:Hg19::chr11:117695415..117695426,-#_fd91614e982f6d70bd6b3eb5b918fdddp3@FXYD2
7.91e-24FFCP PHASE2:Hg19::chr21:41029235..41029269,+#_fd91614e982f6d70bd6b3eb5b918fdddp2@B3GALT5
7.91e-24FFCP PHASE1:Hg19::chr21:41029235..41029269,+#_fd91614e982f6d70bd6b3eb5b918fdddp2@B3GALT5
9.99e-24FFCP PHASE2:Hg19::chr18:3456189..3456200,+#_d29a5f9638116120f345a1aeb02ecdd8p@chr18:3456189..3456200, +
9.99e-24FFCP PHASE1:Hg19::chr10:102505954..102505973,+#_d29a5f9638116120f345a1aeb02ecdd8p3@PAX2
9.99e-24FFCP PHASE1:Hg19::chr18:3456189..3456200,+#_d29a5f9638116120f345a1aeb02ecdd8p@chr18:3456189..3456200, +
9.99e-24FFCP PHASE2:Hg19::chr10:102505954..102505973,+#_d29a5f9638116120f345a1aeb02ecdd8p3@PAX2
3.27e-23FFCP PHASE1:Hg19::chr12:6484832..6484841,+#_2595370376d24092b88d9591567d6441p@chr12:6484832..6484841, +
3.27e-23FFCP PHASE2:Hg19::chr12:6484832..6484841,+#_2595370376d24092b88d9591567d6441+, p@chr12:6484832..6484841
3.29e-23FFCP PHASE1:Hg19::chr3:43532224..43532252,-#_8992a41ce2e78594fb20308e3668dd69p@chr3:43532224..43532252, -
3.29e-23FFCP PHASE2:Hg19::chr3:43532224..43532252,-#_8992a41ce2e78594fb20308e3668dd69p@chr3:43532224..43532252, -

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